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Index: trunk/autom4te.cache/requests
===================================================================
--- trunk/autom4te.cache/requests (revision 735)
+++ trunk/autom4te.cache/requests (revision 736)
@@ -1,739 +1,739 @@
# This file was generated by Autom4te Sun Aug 20 23:09:08 UTC 2017.
# It contains the lists of macros which have been traced.
# It can be safely removed.
@request = (
bless( [
'0',
1,
[
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],
[
'/usr/share/autoconf/autoconf/autoconf.m4f',
'-',
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'/usr/share/aclocal/pkg.m4',
'/usr/share/aclocal-1.15/amversion.m4',
'/usr/share/aclocal-1.15/auxdir.m4',
'/usr/share/aclocal-1.15/cond.m4',
'/usr/share/aclocal-1.15/depend.m4',
'/usr/share/aclocal-1.15/depout.m4',
'/usr/share/aclocal-1.15/init.m4',
'/usr/share/aclocal-1.15/install-sh.m4',
'/usr/share/aclocal-1.15/lead-dot.m4',
'/usr/share/aclocal-1.15/make.m4',
'/usr/share/aclocal-1.15/missing.m4',
'/usr/share/aclocal-1.15/options.m4',
'/usr/share/aclocal-1.15/prog-cc-c-o.m4',
'/usr/share/aclocal-1.15/runlog.m4',
'/usr/share/aclocal-1.15/sanity.m4',
'/usr/share/aclocal-1.15/silent.m4',
'/usr/share/aclocal-1.15/strip.m4',
'/usr/share/aclocal-1.15/substnot.m4',
'/usr/share/aclocal-1.15/tar.m4',
'm4/libtool.m4',
'm4/ltoptions.m4',
'm4/ltsugar.m4',
'm4/ltversion.m4',
'm4/lt~obsolete.m4',
'configure.ac'
],
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Index: trunk/npstat/nm/sumOfSquares.hh
===================================================================
--- trunk/npstat/nm/sumOfSquares.hh (revision 735)
+++ trunk/npstat/nm/sumOfSquares.hh (revision 736)
@@ -1,39 +1,39 @@
#ifndef NPSTAT_SUMOFSQUARES_HH_
#define NPSTAT_SUMOFSQUARES_HH_
/*!
// \file sumOfSquares.hh
//
// \brief A simple code to calculate the sum of squares of elements
// inside a contiguous buffer
//
// Author: I. Volobouev
//
// November 2020
*/
#include <cassert>
#include "npstat/nm/PreciseType.hh"
namespace npstat {
template<typename Numeric>
typename PreciseType<Numeric>::type sumOfSquares(
const Numeric* data, const unsigned long len)
{
typedef typename PreciseType<Numeric>::type Precise;
Precise sum = Precise();
if (len)
{
assert(data);
for (unsigned long i=0; i<len; ++i)
{
const Precise v = static_cast<Precise>(data[i]);
sum += v*v;
}
}
return sum;
}
}
-#endif NPSTAT_SUMOFSQUARES_HH_
+#endif // NPSTAT_SUMOFSQUARES_HH_
Index: trunk/npstat/stat/OrthoPolyGOFTest.icc
===================================================================
--- trunk/npstat/stat/OrthoPolyGOFTest.icc (revision 735)
+++ trunk/npstat/stat/OrthoPolyGOFTest.icc (revision 736)
@@ -1,118 +0,0 @@
-#include <cassert>
-#include <algorithm>
-#include <stdexcept>
-#include <cmath>
-
-#include "npstat/nm/truncatedInverseSqrt.hh"
-#include "npstat/nm/sumOfSquares.hh"
-
-namespace npstat {
- template <class Quadrature>
- OrthoPolyGOFTest::OrthoPolyGOFTest(
- const Quadrature& q,
- const AbsClassicalOrthoPoly1D& poly,
- const unsigned i_maxdeg)
- : poly_(poly.clone()),
- buf_((i_maxdeg+1U)*(i_maxdeg+2U)/2U - 1U),
- statBuf_(2U*i_maxdeg),
- maxdeg_(i_maxdeg)
- {
- calculateNormalizingMatrix(q, &invsqr_);
- }
-
- template <class Quadrature>
- void OrthoPolyGOFTest::calculateNormalizingMatrix(
- const Quadrature& q, Matrix<lapack_double>* result) const
- {
- assert(result);
-
- const unsigned maxdegP1 = maxdeg_ + 1U;
- const unsigned nRows = maxdegP1*(maxdegP1+1U)/2U - 1U;
- Matrix<lapack_double> covmat(nRows, nRows);
-
- unsigned iRow = 0;
- for (unsigned i=0; i<=maxdeg_; ++i)
- {
- for (unsigned k=i ? i : 1U; k<=maxdeg_; ++k, ++iRow)
- {
- assert(iRow < nRows);
- const double k_del_ik = k == i ? 1.0 : 0.0;
- unsigned iCol = 0;
- for (unsigned j=0; j<=maxdeg_; ++j)
- {
- for (unsigned m=j ? j : 1U; m<=maxdeg_; ++m, ++iCol)
- {
- if (iCol >= iRow)
- {
- assert(iCol < nRows);
- const double k_del_jm = j == m ? 1.0 : 0.0;
- double cov = poly_->jointAverage(q, i, k, j, m) -
- k_del_ik*k_del_jm;
- if (i == j && k == m && cov < 0.0)
- cov = 0.0;
- covmat[iRow][iCol] = cov;
- }
- }
- }
- assert(iCol == nRows);
- }
- }
- assert(iRow == nRows);
-
- iRow = 0;
- for (unsigned i=0; i<=maxdeg_; ++i)
- {
- for (unsigned k=i ? i : 1U; k<=maxdeg_; ++k, ++iRow)
- {
- unsigned iCol = 0;
- for (unsigned j=0; j<=maxdeg_; ++j)
- {
- for (unsigned m=j ? j : 1U; m<=maxdeg_; ++m, ++iCol)
- if (iCol < iRow)
- covmat[iRow][iCol] = covmat[iCol][iRow];
- }
- }
- }
-
- truncatedInverseSqrt(covmat, 2U*maxdeg_, 0.0, result);
- assert(result->nRows() == 2U*maxdeg_);
- }
-
- template<typename Numeric>
- void OrthoPolyGOFTest::normalizedDeviations(
- const Numeric* data, const unsigned long lenData,
- double* deviations, const unsigned lenDeviations) const
- {
- const unsigned twomaxdeg = 2U*maxdeg_;
-
- assert(lenData);
- assert(data);
- assert(lenDeviations >= twomaxdeg);
- assert(deviations);
-
- const Matrix<double>& unnorm = poly_-> sampleProductAverages(
- data, lenData, maxdeg_);
- double* buf = const_cast<double*>(&buf_[0]);
-
- unsigned iRow = 0;
- for (unsigned i=0; i<=maxdeg_; ++i)
- for (unsigned k=i ? i : 1U; k<=maxdeg_; ++k, ++iRow)
- buf[iRow] = unnorm[i][k] - (i == k ? 1.0 : 0.0);
-
- assert(iRow == buf_.size());
- invsqr_.timesVector(buf, iRow, deviations, twomaxdeg);
-
- const double sqrlen = std::sqrt(static_cast<double>(lenData));
- for (unsigned i=0; i<twomaxdeg; ++i)
- deviations[i] *= sqrlen;
- }
-
- template<typename Numeric>
- double OrthoPolyGOFTest::testStatistic(
- const Numeric* data, const unsigned long lenData) const
- {
- double* statbuf = const_cast<double*>(&statBuf_[0]);
- normalizedDeviations(data, lenData, statbuf, statBuf_.size());
- return sumOfSquares(statbuf, statBuf_.size());
- }
-}
Index: trunk/npstat/stat/OrthoPolyGOFTest.hh
===================================================================
--- trunk/npstat/stat/OrthoPolyGOFTest.hh (revision 735)
+++ trunk/npstat/stat/OrthoPolyGOFTest.hh (revision 736)
@@ -1,63 +0,0 @@
-#ifndef NPSTAT_ORTHOPOLYGOFTEST_HH_
-#define NPSTAT_ORTHOPOLYGOFTEST_HH_
-
-/*!
-// \file OrthoPolyGOFTest.hh
-//
-// \brief Orthogonal polynomial goodness-of-fit test
-//
-// Author: I. Volobouev
-//
-// November 2020
-*/
-
-#include <vector>
-#include <memory>
-
-#include "npstat/nm/Matrix.hh"
-#include "npstat/nm/AbsClassicalOrthoPoly1D.hh"
-
-namespace npstat {
- class OrthoPolyGOFTest
- {
- public:
- template <class Quadrature>
- OrthoPolyGOFTest(const Quadrature& q,
- const AbsClassicalOrthoPoly1D& poly,
- unsigned maxdeg);
-
- inline unsigned maxDegree() const {return maxdeg_;}
- inline unsigned numDeviations() const {return 2U*maxdeg_;}
-
- /**
- // Get the value of the test statistic with all
- // terms weighted equally
- */
- template<typename Numeric>
- double testStatistic(const Numeric* data, unsigned long lenData) const;
-
- /**
- // Get individual normalized deviations from which
- // the test statistic is constructed
- */
- template<typename Numeric>
- void normalizedDeviations(
- const Numeric* data, unsigned long lenData,
- double* deviations, unsigned lenDeviations) const;
-
- private:
- template <class Quadrature>
- void calculateNormalizingMatrix(const Quadrature& q,
- Matrix<lapack_double>* m) const;
-
- std::shared_ptr<const AbsClassicalOrthoPoly1D> poly_;
- Matrix<lapack_double> invsqr_;
- std::vector<double> buf_;
- std::vector<double> statBuf_;
- unsigned maxdeg_;
- };
-}
-
-#include "npstat/stat/OrthoPolyGOFTest.icc"
-
-#endif // NPSTAT_ORTHOPOLYGOFTEST_HH_
Index: trunk/npstat/stat/AbsUnbinnedGOFTest1D.hh
===================================================================
--- trunk/npstat/stat/AbsUnbinnedGOFTest1D.hh (revision 0)
+++ trunk/npstat/stat/AbsUnbinnedGOFTest1D.hh (revision 736)
@@ -0,0 +1,54 @@
+#ifndef NPSTAT_ABSUNBINNEDGOFTEST1D_HH_
+#define NPSTAT_ABSUNBINNEDGOFTEST1D_HH_
+
+#include <vector>
+#include <stdexcept>
+
+#include "npstat/rng/AbsRandomGenerator.hh"
+#include "npstat/stat/AbsDistribution1D.hh"
+
+namespace npstat {
+ class AbsUnbinnedGOFTest1D
+ {
+ public:
+ inline explicit AbsUnbinnedGOFTest1D(const AbsDistribution1D& d)
+ : distro_(d.clone()) {}
+
+ inline AbsUnbinnedGOFTest1D(const AbsUnbinnedGOFTest1D& r)
+ : distro_(r.distro_->clone()) {}
+
+ inline AbsUnbinnedGOFTest1D& operator=(const AbsUnbinnedGOFTest1D& r)
+ {
+ if (this != &r)
+ {
+ delete distro_;
+ distro_ = 0;
+ distro_ = r.distro_->clone();
+ }
+ return *this;
+ }
+
+ inline virtual ~AbsUnbinnedGOFTest1D() {delete distro_;}
+
+ virtual double testStatistic(const double* data, unsigned long sz) const=0;
+ virtual double testStatistic(const float* data, unsigned long sz) const=0;
+
+ inline virtual double analyticPValue(
+ double /* stat */, unsigned long /* sz */) const
+ {
+ throw std::runtime_error(
+ "In npstat::AbsUnbinnedGOFTest1D::analyticPValue: "
+ "this function is not implemented by the derived class");
+ }
+ inline virtual bool hasAnalyticPValue() const {return false;}
+
+ virtual void simulateStatistic(
+ AbsRandomGenerator& g, unsigned long sz,
+ unsigned nPseudo, std::vector<double>* stats) const;
+
+ protected:
+ AbsDistribution1D* distro_;
+ };
+}
+
+#endif // NPSTAT_ABSUNBINNEDGOFTEST1D_HH_
Index: trunk/npstat/stat/Makefile
===================================================================
--- trunk/npstat/stat/Makefile (revision 735)
+++ trunk/npstat/stat/Makefile (revision 736)
@@ -1,1246 +1,1250 @@
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# with or without modifications, as long as this notice is preserved.
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BoundaryHandling.lo SmoothedEMUnfold1D.lo Copulas.lo \
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SequentialGroupedCopulaSmoother.lo \
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volumeDensityFromBinnedRadial.lo statUncertainties.lo \
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correctDensityEstimateGHU.lo ComparisonDistribution1D.lo \
DistributionMixND.lo DiscreteGauss1DBuilder.lo \
DensityOrthoPoly1D.lo scanMultivariateDensityAsWeight.lo \
scanSymmetricDensityAsWeight.lo DiscreteGaussCopulaSmoother.lo \
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- MatrixFilter1DBuilder.lo PolynomialDistro1D.lo
+ MatrixFilter1DBuilder.lo PolynomialDistro1D.lo \
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libstat_la_SOURCES = AbsDistribution1D.cc AbsUnfoldND.cc AbsKDE1DKernel.cc \
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RightCensoredDistribution.cc AbsDiscreteDistribution1D.cc convertAxis.cc \
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DensityScan1D.cc BoundaryHandling.cc SmoothedEMUnfold1D.cc Copulas.cc \
PearsonsChiSquared.cc BinnedKSTest1D.cc MultiscaleEMUnfold1D.cc \
AbsBinnedComparison1D.cc BinnedADTest1D.cc LocalPolyFilter1DReader.cc \
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statUncertainties.cc LocationScaleFamily1D.cc SinhAsinhTransform1D.cc \
KDE1DHOSymbetaKernel.cc EdgeworthSeriesMethod.cc scannedKSDistance.cc \
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correctDensityEstimateGHU.cc ComparisonDistribution1D.cc \
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scanMultivariateDensityAsWeight.cc scanSymmetricDensityAsWeight.cc \
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saddlepointDistribution1D.cc MatrixFilter1DBuilder.cc \
- PolynomialDistro1D.cc
+ PolynomialDistro1D.cc AbsUnbinnedGOFTest1D.cc OrthoPolyGOFTest1D.cc
include_HEADERS = AbsBandwidthCV.hh \
AbsBandwidthGCV.hh \
AbsBinnedComparison1D.hh \
AbsBinnedComparison1D.icc \
AbsCGF1D.hh \
AbsCompositeDistroBuilder.hh \
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AbsCopulaSmootherBase.hh \
AbsCopulaSmootherBase.icc \
AbsCVCopulaSmoother.hh \
AbsDiscreteDistribution1D.hh \
AbsDistribution1D.hh \
AbsDistribution1D.icc \
AbsDistributionND.hh \
AbsDistributionND.icc \
AbsDistributionTransform1D.hh \
AbsDistro1DBuilder.hh \
AbsDistro1DBuilder.icc \
AbsFilter1DBuilder.hh \
AbsInterpolatedDistribution1D.hh \
AbsInterpolationAlgoND.hh \
AbsKDE1DKernel.hh \
AbsKDE1DKernel.icc \
AbsLossCalculator.hh \
AbsMarginalSmootherBase.hh \
AbsMarginalSmootherBase.icc \
AbsNtuple.hh \
AbsNtuple.icc \
AbsPolyFilter1D.hh \
AbsPolyFilterND.hh \
AbsResponseBoxBuilder.hh \
AbsResponseIntervalBuilder.hh \
AbsSymbetaFilterProvider.hh \
+ AbsUnbinnedGOFTest1D.hh \
AbsUnfold1D.hh \
AbsUnfoldingFilterND.hh \
AbsUnfoldND.hh \
AllSymbetaParams1D.hh \
amiseOptimalBandwidth.hh \
amiseOptimalBandwidth.icc \
ArchivedNtuple.hh \
ArchivedNtuple.icc \
ArrayProjectors.hh \
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arrayStats.hh \
arrayStats.icc \
AsinhTransform1D.hh \
BandwidthCVLeastSquares1D.hh \
BandwidthCVLeastSquares1D.icc \
BandwidthCVLeastSquaresND.hh \
BandwidthCVLeastSquaresND.icc \
BandwidthCVPseudoLogli1D.hh \
BandwidthCVPseudoLogli1D.icc \
BandwidthCVPseudoLogliND.hh \
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BandwidthGCVLeastSquares1D.hh \
BandwidthGCVLeastSquares1D.icc \
BandwidthGCVLeastSquaresND.hh \
BandwidthGCVLeastSquaresND.icc \
BandwidthGCVPseudoLogli1D.hh \
BandwidthGCVPseudoLogli1D.icc \
BandwidthGCVPseudoLogliND.hh \
BandwidthGCVPseudoLogliND.icc \
BernsteinCopulaSmoother.hh \
BernsteinFilter1DBuilder.hh \
betaKernelsBandwidth.hh \
betaKernelsBandwidth.icc \
BetaFilter1DBuilder.hh \
BinnedADTest1D.hh \
BinnedKSTest1D.hh \
BinSummary.hh \
BinSummary.icc \
BoundaryHandling.hh \
BoundaryMethod.hh \
buildInterpolatedCompositeDistroND.hh \
buildInterpolatedCompositeDistroND.icc \
buildInterpolatedDistro1DNP.hh \
buildInterpolatedDistro1DNP.icc \
buildInterpolatedHelpers.hh \
CensoredQuantileRegression.hh \
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CircularBuffer.hh \
CircularBuffer.icc \
Column.hh \
Column.icc \
ComparisonDistribution1D.hh \
CompositeDistribution1D.hh \
CompositeDistributionND.hh \
CompositeDistributionND.icc \
CompositeDistros1D.hh \
ConstantBandwidthSmoother1D.hh \
ConstantBandwidthSmootherND.hh \
ConstantBandwidthSmootherND.icc \
continuousDegreeTaper.hh \
convertAxis.hh \
CopulaInterpolationND.hh \
Copulas.hh \
correctDensityEstimateGHU.hh \
CrossCovarianceAccumulator.hh \
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cumulantConversion.hh \
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cumulantUncertainties.hh \
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CVCopulaSmoother.hh \
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DeltaMixture1D.hh \
DeltaMixture1D.icc \
DensityAveScanND.hh \
DensityOrthoPoly1D.hh \
DensityScan1D.hh \
DensityScanND.hh \
DiscreteDistribution1DReader.hh \
DiscreteDistributions1D.hh \
DiscreteGauss1DBuilder.hh \
DiscreteGaussCopulaSmoother.hh \
discretizationErrorND.hh \
Distribution1DFactory.hh \
Distribution1DReader.hh \
DistributionTransform1DReader.hh \
DistributionMix1D.hh \
DistributionMixND.hh \
DistributionNDReader.hh \
Distributions1D.hh \
Distributions1D.icc \
DistributionsND.hh \
DistributionsND.icc \
distributionReadError.hh \
distro1DStats.hh \
DualHistoAxis.hh \
DummyCompositeDistroBuilder.hh \
DummyDistro1DBuilder.hh \
DummyResponseBoxBuilder.hh \
DummyResponseIntervalBuilder.hh \
EdgeworthSeries1D.hh \
EdgeworthSeriesMethod.hh \
empiricalCopula.hh \
empiricalCopulaHisto.hh \
empiricalCopulaHisto.icc \
empiricalCopula.icc \
ExpTiltedDistribution1D.hh \
fillHistoFromText.hh \
fillHistoFromText.icc \
Filter1DBuilders.hh \
FitUtils.hh \
FitUtils.icc \
GaussianMixtureEntry.hh \
GaussianMixture1D.hh \
gaussianResponseMatrix.hh \
GCVCopulaSmoother.hh \
GCVCopulaSmoother.icc \
griddedRobustRegression.hh \
griddedRobustRegression.icc \
GriddedRobustRegressionStop.hh \
GridInterpolatedDistribution.hh \
GridRandomizer.hh \
HistoAxis.hh \
HistoND.hh \
HistoND.icc \
HistoNDCdf.hh \
HistoNDFunctorInstances.hh \
histoStats.hh \
histoStats.icc \
histoUtils.hh \
histoUtils.icc \
IdentityTransform1D.hh \
InMemoryNtuple.hh \
InMemoryNtuple.icc \
InterpolatedDistribution1D.hh \
InterpolatedDistro1D1P.hh \
InterpolatedDistro1DNP.hh \
interpolateHistoND.hh \
interpolateHistoND.icc \
InterpolationFunctorInstances.hh \
JohnsonCurves.hh \
JohnsonKDESmoother.hh \
KDE1D.hh \
KDE1DCV.hh \
KDE1DHOSymbetaKernel.hh \
KDECopulaSmoother.hh \
KDECopulaSmoother.icc \
KDEGroupedCopulaSmoother.hh \
KDEGroupedCopulaSmoother.icc \
KDEFilterND.hh \
KDEFilterND.icc \
kendallsTau.hh \
kendallsTau.icc \
kernelSensitivityMatrix.hh \
kernelSensitivityMatrix.icc \
LeftCensoredDistribution.hh \
likelihoodStatisticCumulants.hh \
LikelihoodStatisticType.hh \
LocalLogisticRegression.hh \
LocalLogisticRegression.icc \
LocalMultiFilter1D.hh \
LocalMultiFilter1D.icc \
LocalPolyFilter1D.hh \
LocalPolyFilter1D.icc \
LocalPolyFilter1DReader.hh \
LocalPolyFilterND.hh \
LocalPolyFilterND.icc \
LocalQuadraticLeastSquaresND.hh \
LocalQuadraticLeastSquaresND.icc \
LocalQuantileRegression.hh \
LocalQuantileRegression.icc \
LocationScaleFamily1D.hh \
LocationScaleTransform1.hh \
LocationScaleTransform1.icc \
logLikelihoodPeak.hh \
LogRatioTransform1D.hh \
LogTransform1D.hh \
LOrPECopulaSmoother.hh \
LOrPECopulaSmoother.icc \
LOrPEGroupedCopulaSmoother.hh \
LOrPEGroupedCopulaSmoother.icc \
LOrPEMarginalSmoother.hh \
lorpeBackgroundCVDensity1D.hh \
lorpeBackgroundCVDensity1D.icc \
lorpeBackground1D.hh \
lorpeBackground1D.icc \
lorpeMise1D.hh \
lorpeSmooth1D.hh \
lorpeSmooth1D.icc \
MatrixFilter1DBuilder.hh \
MemoizingSymbetaFilterProvider.hh \
mergeTwoHistos.hh \
mergeTwoHistos.icc \
mirrorWeight.hh \
MultiscaleEMUnfold1D.hh \
multinomialCovariance1D.hh \
MultivariateSumAccumulator.hh \
MultivariateSumsqAccumulator.hh \
MultivariateSumsqAccumulator.icc \
MultivariateWeightedSumAccumulator.hh \
MultivariateWeightedSumsqAccumulator.hh \
MultivariateWeightedSumsqAccumulator.icc \
neymanPearsonWindow1D.hh \
NMCombinationSequencer.hh \
NonparametricCompositeBuilder.hh \
NonparametricCompositeBuilder.icc \
NonparametricDistro1DBuilder.hh \
NonparametricDistro1DBuilder.icc \
NtHistoFill.hh \
NtNtupleFill.hh \
NtRectangularCut.hh \
NtRectangularCut.icc \
NtupleBuffer.hh \
NtupleBuffer.icc \
NtupleRecordTypes.hh \
NtupleRecordTypesFwd.hh \
NtupleReference.hh \
NUHistoAxis.hh \
OrderedPointND.hh \
OrderedPointND.icc \
orthoPoly1DVProducts.hh \
orthoPoly1DVProducts.icc \
- OrthoPolyGOFTest.hh \
- OrthoPolyGOFTest.icc \
+ OrthoPolyGOFTest1D.hh \
+ OrthoPolyGOFTest1D.icc \
OSDE1D.hh \
OSDE1D.icc \
PearsonsChiSquared.hh \
PolyFilterCollection1D.hh \
PolynomialDistro1D.hh \
productResponseMatrix.hh \
productResponseMatrix.icc \
ProductSymmetricBetaNDCdf.hh \
QuadraticOrthoPolyND.hh \
QuadraticOrthoPolyND.icc \
QuantileRegression1D.hh \
QuantileRegression1D.icc \
QuantileTable1D.hh \
randomHistoFill1D.hh \
randomHistoFill1D.icc \
randomHistoFillND.hh \
randomHistoFillND.icc \
RatioOfNormals.hh \
RatioResponseBoxBuilder.hh \
RatioResponseBoxBuilder.icc \
RatioResponseIntervalBuilder.hh \
RatioResponseIntervalBuilder.icc \
ResponseMatrix.hh \
RightCensoredDistribution.hh \
saddlepointDistribution1D.hh \
SampleAccumulator.hh \
SampleAccumulator.icc \
SbMomentsCalculator.hh \
ScalableGaussND.hh \
scannedKSDistance.hh \
scanMultivariateDensityAsWeight.hh \
scanSymmetricDensityAsWeight.hh \
SequentialCopulaSmoother.hh \
SequentialCopulaSmoother.icc \
SequentialGroupedCopulaSmoother.hh \
SequentialGroupedCopulaSmoother.icc \
SequentialPolyFilterND.hh \
SequentialPolyFilterND.icc \
SeriesCGF1D.hh \
SinhAsinhTransform1D.hh \
SmoothedEMUnfold1D.hh \
SmoothedEMUnfoldND.hh \
spearmansRho.hh \
spearmansRho.icc \
StatAccumulator.hh \
StatAccumulatorArr.hh \
StatAccumulatorPair.hh \
statUncertainties.hh \
StatUtils.hh \
StatUtils.icc \
StorableHistoNDFunctor.hh \
StorableHistoNDFunctor.icc \
StorableInterpolationFunctor.hh \
StorableInterpolationFunctor.icc \
StorableMultivariateFunctor.hh \
StorableMultivariateFunctorReader.hh \
SymbetaParams1D.hh \
TransformedDistribution1D.hh \
TruncatedDistribution1D.hh \
TwoPointsLTSLoss.hh \
TwoPointsLTSLoss.icc \
UGaussConvolution1D.hh \
UnfoldingBandwidthScanner1D.hh \
UnfoldingBandwidthScannerND.hh \
UnfoldingFilterNDReader.hh \
UnitMapInterpolationND.hh \
variableBandwidthSmooth1D.hh \
variableBandwidthSmooth1D.icc \
VariableBandwidthSmoother1D.hh \
VerticallyInterpolatedDistribution1D.hh \
volumeDensityFromBinnedRadial.hh \
weightedCopulaHisto.hh \
weightedCopulaHisto.icc \
WeightedDistro1DPtr.hh \
WeightedLTSLoss.hh \
WeightedLTSLoss.icc \
WeightedSampleAccumulator.hh \
WeightedSampleAccumulator.icc \
WeightedStatAccumulator.hh \
WeightedStatAccumulatorPair.hh \
WeightTableFilter1DBuilder.hh
EXTRA_DIST = 00README.txt npstat_doxy.hh
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continuousDegreeTaper.hh \
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correctDensityEstimateGHU.hh \
CrossCovarianceAccumulator.hh \
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cumulantConversion.hh \
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cumulantUncertainties.hh \
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DeltaMixture1D.hh \
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DensityOrthoPoly1D.hh \
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Distributions1D.hh \
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distributionReadError.hh \
distro1DStats.hh \
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EdgeworthSeries1D.hh \
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Filter1DBuilders.hh \
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GaussianMixtureEntry.hh \
GaussianMixture1D.hh \
gaussianResponseMatrix.hh \
GCVCopulaSmoother.hh \
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griddedRobustRegression.hh \
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HistoAxis.hh \
HistoND.hh \
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KDE1D.hh \
KDE1DCV.hh \
KDE1DHOSymbetaKernel.hh \
KDECopulaSmoother.hh \
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KDEFilterND.hh \
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LocalMultiFilter1D.hh \
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LocalPolyFilter1D.hh \
LocalPolyFilter1D.icc \
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LocalPolyFilterND.hh \
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neymanPearsonWindow1D.hh \
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NonparametricCompositeBuilder.hh \
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OSDE1D.icc \
PearsonsChiSquared.hh \
PolyFilterCollection1D.hh \
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productResponseMatrix.hh \
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QuadraticOrthoPolyND.hh \
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QuantileRegression1D.hh \
QuantileRegression1D.icc \
QuantileTable1D.hh \
randomHistoFill1D.hh \
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SequentialCopulaSmoother.hh \
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spearmansRho.hh \
spearmansRho.icc \
StatAccumulator.hh \
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StatAccumulatorPair.hh \
statUncertainties.hh \
StatUtils.hh \
StatUtils.icc \
StorableHistoNDFunctor.hh \
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TwoPointsLTSLoss.hh \
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.PRECIOUS: Makefile
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
Index: trunk/npstat/stat/OrthoPolyGOFTest1D.hh
===================================================================
--- trunk/npstat/stat/OrthoPolyGOFTest1D.hh (revision 0)
+++ trunk/npstat/stat/OrthoPolyGOFTest1D.hh (revision 736)
@@ -0,0 +1,78 @@
+#ifndef NPSTAT_ORTHOPOLYGOFTEST1D_HH_
+#define NPSTAT_ORTHOPOLYGOFTEST1D_HH_
+
+/*!
+// \file OrthoPolyGOFTest1D.hh
+//
+// \brief Orthogonal polynomial goodness-of-fit test
+//
+// Author: I. Volobouev
+//
+// November 2020
+*/
+
+#include <memory>
+
+#include "npstat/nm/Matrix.hh"
+#include "npstat/nm/AbsClassicalOrthoPoly1D.hh"
+
+#include "npstat/stat/AbsUnbinnedGOFTest1D.hh"
+
+namespace npstat {
+ class OrthoPolyGOFTest1D : public AbsUnbinnedGOFTest1D
+ {
+ public:
+ template <class Quadrature>
+ OrthoPolyGOFTest1D(const AbsDistribution1D& distro,
+ const Quadrature& q,
+ const AbsClassicalOrthoPoly1D& poly,
+ unsigned maxdeg);
+
+ inline virtual ~OrthoPolyGOFTest1D() {}
+
+ inline unsigned maxDegree() const {return maxdeg_;}
+ inline unsigned numDeviations() const {return 2U*maxdeg_;}
+
+ /**
+ // Get the value of the test statistic with all
+ // terms weighted equally
+ */
+ inline virtual double testStatistic(
+ const double* data, const unsigned long sz) const
+ {return testStat(data, sz);}
+
+ inline virtual double testStatistic(
+ const float* data, const unsigned long sz) const
+ {return testStat(data, sz);}
+
+ inline virtual bool hasAnalyticPValue() const {return true;}
+
+ virtual double analyticPValue(double stat, unsigned long sz) const;
+
+ /**
+ // Get individual normalized deviations from which
+ // the test statistic is constructed
+ */
+ template<typename Numeric>
+ void normalizedDeviations(
+ const Numeric* data, unsigned long lenData,
+ double* deviations, unsigned lenDeviations) const;
+
+ private:
+ template <class Quadrature>
+ void calculateNormalizingMatrix(const Quadrature& q,
+ Matrix<lapack_double>* m) const;
+ template<typename Numeric>
+ double testStat(const Numeric* data, unsigned long lenData) const;
+
+ std::shared_ptr<const AbsClassicalOrthoPoly1D> poly_;
+ Matrix<lapack_double> invsqr_;
+ std::vector<double> buf_;
+ std::vector<double> statBuf_;
+ unsigned maxdeg_;
+ };
+}
+
+#include "npstat/stat/OrthoPolyGOFTest1D.icc"
+
+#endif // NPSTAT_ORTHOPOLYGOFTEST1D_HH_
Index: trunk/npstat/stat/OrthoPolyGOFTest1D.icc
===================================================================
--- trunk/npstat/stat/OrthoPolyGOFTest1D.icc (revision 0)
+++ trunk/npstat/stat/OrthoPolyGOFTest1D.icc (revision 736)
@@ -0,0 +1,120 @@
+#include <cassert>
+#include <algorithm>
+#include <stdexcept>
+#include <cmath>
+
+#include "npstat/nm/truncatedInverseSqrt.hh"
+#include "npstat/nm/sumOfSquares.hh"
+
+namespace npstat {
+ template <class Quadrature>
+ OrthoPolyGOFTest1D::OrthoPolyGOFTest1D(
+ const AbsDistribution1D& distro,
+ const Quadrature& q,
+ const AbsClassicalOrthoPoly1D& poly,
+ const unsigned i_maxdeg)
+ : AbsUnbinnedGOFTest1D(distro),
+ poly_(poly.clone()),
+ buf_((i_maxdeg+1U)*(i_maxdeg+2U)/2U - 1U),
+ statBuf_(2U*i_maxdeg),
+ maxdeg_(i_maxdeg)
+ {
+ calculateNormalizingMatrix(q, &invsqr_);
+ }
+
+ template <class Quadrature>
+ void OrthoPolyGOFTest1D::calculateNormalizingMatrix(
+ const Quadrature& q, Matrix<lapack_double>* result) const
+ {
+ assert(result);
+
+ const unsigned maxdegP1 = maxdeg_ + 1U;
+ const unsigned nRows = maxdegP1*(maxdegP1+1U)/2U - 1U;
+ Matrix<lapack_double> covmat(nRows, nRows);
+
+ unsigned iRow = 0;
+ for (unsigned i=0; i<=maxdeg_; ++i)
+ {
+ for (unsigned k=i ? i : 1U; k<=maxdeg_; ++k, ++iRow)
+ {
+ assert(iRow < nRows);
+ const double k_del_ik = k == i ? 1.0 : 0.0;
+ unsigned iCol = 0;
+ for (unsigned j=0; j<=maxdeg_; ++j)
+ {
+ for (unsigned m=j ? j : 1U; m<=maxdeg_; ++m, ++iCol)
+ {
+ if (iCol >= iRow)
+ {
+ assert(iCol < nRows);
+ const double k_del_jm = j == m ? 1.0 : 0.0;
+ double cov = poly_->jointAverage(q, i, k, j, m) -
+ k_del_ik*k_del_jm;
+ if (i == j && k == m && cov < 0.0)
+ cov = 0.0;
+ covmat[iRow][iCol] = cov;
+ }
+ }
+ }
+ assert(iCol == nRows);
+ }
+ }
+ assert(iRow == nRows);
+
+ iRow = 0;
+ for (unsigned i=0; i<=maxdeg_; ++i)
+ {
+ for (unsigned k=i ? i : 1U; k<=maxdeg_; ++k, ++iRow)
+ {
+ unsigned iCol = 0;
+ for (unsigned j=0; j<=maxdeg_; ++j)
+ {
+ for (unsigned m=j ? j : 1U; m<=maxdeg_; ++m, ++iCol)
+ if (iCol < iRow)
+ covmat[iRow][iCol] = covmat[iCol][iRow];
+ }
+ }
+ }
+
+ truncatedInverseSqrt(covmat, 2U*maxdeg_, 0.0, result);
+ assert(result->nRows() == 2U*maxdeg_);
+ }
+
+ template<typename Numeric>
+ void OrthoPolyGOFTest1D::normalizedDeviations(
+ const Numeric* data, const unsigned long lenData,
+ double* deviations, const unsigned lenDeviations) const
+ {
+ const unsigned twomaxdeg = 2U*maxdeg_;
+
+ assert(lenData);
+ assert(data);
+ assert(lenDeviations >= twomaxdeg);
+ assert(deviations);
+
+ const Matrix<double>& unnorm = poly_-> sampleProductAverages(
+ data, lenData, maxdeg_);
+ double* buf = const_cast<double*>(&buf_[0]);
+
+ unsigned iRow = 0;
+ for (unsigned i=0; i<=maxdeg_; ++i)
+ for (unsigned k=i ? i : 1U; k<=maxdeg_; ++k, ++iRow)
+ buf[iRow] = unnorm[i][k] - (i == k ? 1.0 : 0.0);
+
+ assert(iRow == buf_.size());
+ invsqr_.timesVector(buf, iRow, deviations, twomaxdeg);
+
+ const double sqrlen = std::sqrt(static_cast<double>(lenData));
+ for (unsigned i=0; i<twomaxdeg; ++i)
+ deviations[i] *= sqrlen;
+ }
+
+ template<typename Numeric>
+ double OrthoPolyGOFTest1D::testStat(
+ const Numeric* data, const unsigned long lenData) const
+ {
+ double* statbuf = const_cast<double*>(&statBuf_[0]);
+ normalizedDeviations(data, lenData, statbuf, statBuf_.size());
+ return sumOfSquares(statbuf, statBuf_.size());
+ }
+}
Index: trunk/npstat/stat/Makefile.am
===================================================================
--- trunk/npstat/stat/Makefile.am (revision 735)
+++ trunk/npstat/stat/Makefile.am (revision 736)
@@ -1,395 +1,396 @@
AM_CPPFLAGS = -I@top_srcdir@/ $(DEPS_CFLAGS)
noinst_LTLIBRARIES = libstat.la
libstat_la_SOURCES = AbsDistribution1D.cc AbsUnfoldND.cc AbsKDE1DKernel.cc \
AbsDistributionND.cc amiseOptimalBandwidth.cc CompositeDistribution1D.cc \
CompositeDistributionND.cc CopulaInterpolationND.cc SymbetaParams1D.cc \
Distribution1DFactory.cc Distribution1DReader.cc DistributionNDReader.cc \
Distributions1D.cc DistributionsND.cc CrossCovarianceAccumulator.cc \
fitSbParameters.cc StatAccumulatorArr.cc HistoAxis.cc ResponseMatrix.cc \
InterpolatedDistribution1D.cc JohnsonCurves.cc JohnsonKDESmoother.cc \
LocalPolyFilter1D.cc logLikelihoodPeak.cc PolyFilterCollection1D.cc \
SbMomentsBigGamma.cc SbMomentsCalculator.cc gaussianResponseMatrix.cc \
SequentialCopulaSmoother.cc SequentialPolyFilterND.cc StatAccumulator.cc \
UnitMapInterpolationND.cc WeightedStatAccumulator.cc AbsNtuple.cc \
QuadraticOrthoPolyND.cc NMCombinationSequencer.cc Filter1DBuilders.cc \
StatAccumulatorPair.cc GridRandomizer.cc ConstantBandwidthSmoother1D.cc \
GaussianMixture1D.cc HistoNDCdf.cc NUHistoAxis.cc AllSymbetaParams1D.cc \
distributionReadError.cc WeightedStatAccumulatorPair.cc AbsUnfold1D.cc \
ProductSymmetricBetaNDCdf.cc DualHistoAxis.cc multinomialCovariance1D.cc \
StorableMultivariateFunctor.cc StorableMultivariateFunctorReader.cc \
TruncatedDistribution1D.cc neymanPearsonWindow1D.cc AsinhTransform1D.cc \
LOrPEMarginalSmoother.cc LeftCensoredDistribution.cc QuantileTable1D.cc \
RightCensoredDistribution.cc AbsDiscreteDistribution1D.cc convertAxis.cc \
DiscreteDistribution1DReader.cc DiscreteDistributions1D.cc lorpeMise1D.cc \
BernsteinFilter1DBuilder.cc BetaFilter1DBuilder.cc AbsFilter1DBuilder.cc \
continuousDegreeTaper.cc RatioOfNormals.cc AbsCVCopulaSmoother.cc \
DensityScan1D.cc BoundaryHandling.cc SmoothedEMUnfold1D.cc Copulas.cc \
PearsonsChiSquared.cc BinnedKSTest1D.cc MultiscaleEMUnfold1D.cc \
AbsBinnedComparison1D.cc BinnedADTest1D.cc LocalPolyFilter1DReader.cc \
MemoizingSymbetaFilterProvider.cc UGaussConvolution1D.cc BinSummary.cc \
SmoothedEMUnfoldND.cc UnfoldingFilterNDReader.cc AbsUnfoldingFilterND.cc \
UnfoldingBandwidthScannerND.cc DistributionMix1D.cc ScalableGaussND.cc \
InterpolatedDistro1D1P.cc AbsDistributionTransform1D.cc LogTransform1D.cc \
DistributionTransform1DReader.cc TransformedDistribution1D.cc AbsCGF1D.cc \
WeightTableFilter1DBuilder.cc VerticallyInterpolatedDistribution1D.cc \
LocalMultiFilter1D.cc LogRatioTransform1D.cc IdentityTransform1D.cc \
VariableBandwidthSmoother1D.cc AbsMarginalSmootherBase.cc OSDE1D.cc \
buildInterpolatedHelpers.cc GridInterpolatedDistribution.cc \
AbsCopulaSmootherBase.cc BernsteinCopulaSmoother.cc distro1DStats.cc \
SequentialGroupedCopulaSmoother.cc UnfoldingBandwidthScanner1D.cc \
InterpolatedDistro1DNP.cc volumeDensityFromBinnedRadial.cc \
statUncertainties.cc LocationScaleFamily1D.cc SinhAsinhTransform1D.cc \
KDE1DHOSymbetaKernel.cc EdgeworthSeriesMethod.cc scannedKSDistance.cc \
EdgeworthSeries1D.cc DeltaMixture1D.cc LikelihoodStatisticType.cc \
likelihoodStatisticCumulants.cc GaussianMixtureEntry.cc SeriesCGF1D.cc \
correctDensityEstimateGHU.cc ComparisonDistribution1D.cc \
DistributionMixND.cc DiscreteGauss1DBuilder.cc DensityOrthoPoly1D.cc \
scanMultivariateDensityAsWeight.cc scanSymmetricDensityAsWeight.cc \
DiscreteGaussCopulaSmoother.cc ExpTiltedDistribution1D.cc \
saddlepointDistribution1D.cc MatrixFilter1DBuilder.cc \
- PolynomialDistro1D.cc
+ PolynomialDistro1D.cc AbsUnbinnedGOFTest1D.cc OrthoPolyGOFTest1D.cc
includedir = ${prefix}/include/npstat/stat
include_HEADERS = AbsBandwidthCV.hh \
AbsBandwidthGCV.hh \
AbsBinnedComparison1D.hh \
AbsBinnedComparison1D.icc \
AbsCGF1D.hh \
AbsCompositeDistroBuilder.hh \
AbsCompositeDistroBuilder.icc \
AbsCopulaSmootherBase.hh \
AbsCopulaSmootherBase.icc \
AbsCVCopulaSmoother.hh \
AbsDiscreteDistribution1D.hh \
AbsDistribution1D.hh \
AbsDistribution1D.icc \
AbsDistributionND.hh \
AbsDistributionND.icc \
AbsDistributionTransform1D.hh \
AbsDistro1DBuilder.hh \
AbsDistro1DBuilder.icc \
AbsFilter1DBuilder.hh \
AbsInterpolatedDistribution1D.hh \
AbsInterpolationAlgoND.hh \
AbsKDE1DKernel.hh \
AbsKDE1DKernel.icc \
AbsLossCalculator.hh \
AbsMarginalSmootherBase.hh \
AbsMarginalSmootherBase.icc \
AbsNtuple.hh \
AbsNtuple.icc \
AbsPolyFilter1D.hh \
AbsPolyFilterND.hh \
AbsResponseBoxBuilder.hh \
AbsResponseIntervalBuilder.hh \
AbsSymbetaFilterProvider.hh \
+ AbsUnbinnedGOFTest1D.hh \
AbsUnfold1D.hh \
AbsUnfoldingFilterND.hh \
AbsUnfoldND.hh \
AllSymbetaParams1D.hh \
amiseOptimalBandwidth.hh \
amiseOptimalBandwidth.icc \
ArchivedNtuple.hh \
ArchivedNtuple.icc \
ArrayProjectors.hh \
ArrayProjectors.icc \
arrayStats.hh \
arrayStats.icc \
AsinhTransform1D.hh \
BandwidthCVLeastSquares1D.hh \
BandwidthCVLeastSquares1D.icc \
BandwidthCVLeastSquaresND.hh \
BandwidthCVLeastSquaresND.icc \
BandwidthCVPseudoLogli1D.hh \
BandwidthCVPseudoLogli1D.icc \
BandwidthCVPseudoLogliND.hh \
BandwidthCVPseudoLogliND.icc \
BandwidthGCVLeastSquares1D.hh \
BandwidthGCVLeastSquares1D.icc \
BandwidthGCVLeastSquaresND.hh \
BandwidthGCVLeastSquaresND.icc \
BandwidthGCVPseudoLogli1D.hh \
BandwidthGCVPseudoLogli1D.icc \
BandwidthGCVPseudoLogliND.hh \
BandwidthGCVPseudoLogliND.icc \
BernsteinCopulaSmoother.hh \
BernsteinFilter1DBuilder.hh \
betaKernelsBandwidth.hh \
betaKernelsBandwidth.icc \
BetaFilter1DBuilder.hh \
BinnedADTest1D.hh \
BinnedKSTest1D.hh \
BinSummary.hh \
BinSummary.icc \
BoundaryHandling.hh \
BoundaryMethod.hh \
buildInterpolatedCompositeDistroND.hh \
buildInterpolatedCompositeDistroND.icc \
buildInterpolatedDistro1DNP.hh \
buildInterpolatedDistro1DNP.icc \
buildInterpolatedHelpers.hh \
CensoredQuantileRegression.hh \
CensoredQuantileRegression.icc \
CircularBuffer.hh \
CircularBuffer.icc \
Column.hh \
Column.icc \
ComparisonDistribution1D.hh \
CompositeDistribution1D.hh \
CompositeDistributionND.hh \
CompositeDistributionND.icc \
CompositeDistros1D.hh \
ConstantBandwidthSmoother1D.hh \
ConstantBandwidthSmootherND.hh \
ConstantBandwidthSmootherND.icc \
continuousDegreeTaper.hh \
convertAxis.hh \
CopulaInterpolationND.hh \
Copulas.hh \
correctDensityEstimateGHU.hh \
CrossCovarianceAccumulator.hh \
CrossCovarianceAccumulator.icc \
cumulantConversion.hh \
cumulantConversion.icc \
cumulantUncertainties.hh \
cumulantUncertainties.icc \
CVCopulaSmoother.hh \
CVCopulaSmoother.icc \
DeltaMixture1D.hh \
DeltaMixture1D.icc \
DensityAveScanND.hh \
DensityOrthoPoly1D.hh \
DensityScan1D.hh \
DensityScanND.hh \
DiscreteDistribution1DReader.hh \
DiscreteDistributions1D.hh \
DiscreteGauss1DBuilder.hh \
DiscreteGaussCopulaSmoother.hh \
discretizationErrorND.hh \
Distribution1DFactory.hh \
Distribution1DReader.hh \
DistributionTransform1DReader.hh \
DistributionMix1D.hh \
DistributionMixND.hh \
DistributionNDReader.hh \
Distributions1D.hh \
Distributions1D.icc \
DistributionsND.hh \
DistributionsND.icc \
distributionReadError.hh \
distro1DStats.hh \
DualHistoAxis.hh \
DummyCompositeDistroBuilder.hh \
DummyDistro1DBuilder.hh \
DummyResponseBoxBuilder.hh \
DummyResponseIntervalBuilder.hh \
EdgeworthSeries1D.hh \
EdgeworthSeriesMethod.hh \
empiricalCopula.hh \
empiricalCopulaHisto.hh \
empiricalCopulaHisto.icc \
empiricalCopula.icc \
ExpTiltedDistribution1D.hh \
fillHistoFromText.hh \
fillHistoFromText.icc \
Filter1DBuilders.hh \
FitUtils.hh \
FitUtils.icc \
GaussianMixtureEntry.hh \
GaussianMixture1D.hh \
gaussianResponseMatrix.hh \
GCVCopulaSmoother.hh \
GCVCopulaSmoother.icc \
griddedRobustRegression.hh \
griddedRobustRegression.icc \
GriddedRobustRegressionStop.hh \
GridInterpolatedDistribution.hh \
GridRandomizer.hh \
HistoAxis.hh \
HistoND.hh \
HistoND.icc \
HistoNDCdf.hh \
HistoNDFunctorInstances.hh \
histoStats.hh \
histoStats.icc \
histoUtils.hh \
histoUtils.icc \
IdentityTransform1D.hh \
InMemoryNtuple.hh \
InMemoryNtuple.icc \
InterpolatedDistribution1D.hh \
InterpolatedDistro1D1P.hh \
InterpolatedDistro1DNP.hh \
interpolateHistoND.hh \
interpolateHistoND.icc \
InterpolationFunctorInstances.hh \
JohnsonCurves.hh \
JohnsonKDESmoother.hh \
KDE1D.hh \
KDE1DCV.hh \
KDE1DHOSymbetaKernel.hh \
KDECopulaSmoother.hh \
KDECopulaSmoother.icc \
KDEGroupedCopulaSmoother.hh \
KDEGroupedCopulaSmoother.icc \
KDEFilterND.hh \
KDEFilterND.icc \
kendallsTau.hh \
kendallsTau.icc \
kernelSensitivityMatrix.hh \
kernelSensitivityMatrix.icc \
LeftCensoredDistribution.hh \
likelihoodStatisticCumulants.hh \
LikelihoodStatisticType.hh \
LocalLogisticRegression.hh \
LocalLogisticRegression.icc \
LocalMultiFilter1D.hh \
LocalMultiFilter1D.icc \
LocalPolyFilter1D.hh \
LocalPolyFilter1D.icc \
LocalPolyFilter1DReader.hh \
LocalPolyFilterND.hh \
LocalPolyFilterND.icc \
LocalQuadraticLeastSquaresND.hh \
LocalQuadraticLeastSquaresND.icc \
LocalQuantileRegression.hh \
LocalQuantileRegression.icc \
LocationScaleFamily1D.hh \
LocationScaleTransform1.hh \
LocationScaleTransform1.icc \
logLikelihoodPeak.hh \
LogRatioTransform1D.hh \
LogTransform1D.hh \
LOrPECopulaSmoother.hh \
LOrPECopulaSmoother.icc \
LOrPEGroupedCopulaSmoother.hh \
LOrPEGroupedCopulaSmoother.icc \
LOrPEMarginalSmoother.hh \
lorpeBackgroundCVDensity1D.hh \
lorpeBackgroundCVDensity1D.icc \
lorpeBackground1D.hh \
lorpeBackground1D.icc \
lorpeMise1D.hh \
lorpeSmooth1D.hh \
lorpeSmooth1D.icc \
MatrixFilter1DBuilder.hh \
MemoizingSymbetaFilterProvider.hh \
mergeTwoHistos.hh \
mergeTwoHistos.icc \
mirrorWeight.hh \
MultiscaleEMUnfold1D.hh \
multinomialCovariance1D.hh \
MultivariateSumAccumulator.hh \
MultivariateSumsqAccumulator.hh \
MultivariateSumsqAccumulator.icc \
MultivariateWeightedSumAccumulator.hh \
MultivariateWeightedSumsqAccumulator.hh \
MultivariateWeightedSumsqAccumulator.icc \
neymanPearsonWindow1D.hh \
NMCombinationSequencer.hh \
NonparametricCompositeBuilder.hh \
NonparametricCompositeBuilder.icc \
NonparametricDistro1DBuilder.hh \
NonparametricDistro1DBuilder.icc \
NtHistoFill.hh \
NtNtupleFill.hh \
NtRectangularCut.hh \
NtRectangularCut.icc \
NtupleBuffer.hh \
NtupleBuffer.icc \
NtupleRecordTypes.hh \
NtupleRecordTypesFwd.hh \
NtupleReference.hh \
NUHistoAxis.hh \
OrderedPointND.hh \
OrderedPointND.icc \
orthoPoly1DVProducts.hh \
orthoPoly1DVProducts.icc \
- OrthoPolyGOFTest.hh \
- OrthoPolyGOFTest.icc \
+ OrthoPolyGOFTest1D.hh \
+ OrthoPolyGOFTest1D.icc \
OSDE1D.hh \
OSDE1D.icc \
PearsonsChiSquared.hh \
PolyFilterCollection1D.hh \
PolynomialDistro1D.hh \
productResponseMatrix.hh \
productResponseMatrix.icc \
ProductSymmetricBetaNDCdf.hh \
QuadraticOrthoPolyND.hh \
QuadraticOrthoPolyND.icc \
QuantileRegression1D.hh \
QuantileRegression1D.icc \
QuantileTable1D.hh \
randomHistoFill1D.hh \
randomHistoFill1D.icc \
randomHistoFillND.hh \
randomHistoFillND.icc \
RatioOfNormals.hh \
RatioResponseBoxBuilder.hh \
RatioResponseBoxBuilder.icc \
RatioResponseIntervalBuilder.hh \
RatioResponseIntervalBuilder.icc \
ResponseMatrix.hh \
RightCensoredDistribution.hh \
saddlepointDistribution1D.hh \
SampleAccumulator.hh \
SampleAccumulator.icc \
SbMomentsCalculator.hh \
ScalableGaussND.hh \
scannedKSDistance.hh \
scanMultivariateDensityAsWeight.hh \
scanSymmetricDensityAsWeight.hh \
SequentialCopulaSmoother.hh \
SequentialCopulaSmoother.icc \
SequentialGroupedCopulaSmoother.hh \
SequentialGroupedCopulaSmoother.icc \
SequentialPolyFilterND.hh \
SequentialPolyFilterND.icc \
SeriesCGF1D.hh \
SinhAsinhTransform1D.hh \
SmoothedEMUnfold1D.hh \
SmoothedEMUnfoldND.hh \
spearmansRho.hh \
spearmansRho.icc \
StatAccumulator.hh \
StatAccumulatorArr.hh \
StatAccumulatorPair.hh \
statUncertainties.hh \
StatUtils.hh \
StatUtils.icc \
StorableHistoNDFunctor.hh \
StorableHistoNDFunctor.icc \
StorableInterpolationFunctor.hh \
StorableInterpolationFunctor.icc \
StorableMultivariateFunctor.hh \
StorableMultivariateFunctorReader.hh \
SymbetaParams1D.hh \
TransformedDistribution1D.hh \
TruncatedDistribution1D.hh \
TwoPointsLTSLoss.hh \
TwoPointsLTSLoss.icc \
UGaussConvolution1D.hh \
UnfoldingBandwidthScanner1D.hh \
UnfoldingBandwidthScannerND.hh \
UnfoldingFilterNDReader.hh \
UnitMapInterpolationND.hh \
variableBandwidthSmooth1D.hh \
variableBandwidthSmooth1D.icc \
VariableBandwidthSmoother1D.hh \
VerticallyInterpolatedDistribution1D.hh \
volumeDensityFromBinnedRadial.hh \
weightedCopulaHisto.hh \
weightedCopulaHisto.icc \
WeightedDistro1DPtr.hh \
WeightedLTSLoss.hh \
WeightedLTSLoss.icc \
WeightedSampleAccumulator.hh \
WeightedSampleAccumulator.icc \
WeightedStatAccumulator.hh \
WeightedStatAccumulatorPair.hh \
WeightTableFilter1DBuilder.hh
EXTRA_DIST = 00README.txt npstat_doxy.hh
Index: trunk/npstat/stat/AbsUnbinnedGOFTest1D.cc
===================================================================
--- trunk/npstat/stat/AbsUnbinnedGOFTest1D.cc (revision 0)
+++ trunk/npstat/stat/AbsUnbinnedGOFTest1D.cc (revision 736)
@@ -0,0 +1,30 @@
+#include <algorithm>
+
+#include "npstat/stat/AbsUnbinnedGOFTest1D.hh"
+
+namespace npstat {
+ void AbsUnbinnedGOFTest1D::simulateStatistic(
+ AbsRandomGenerator& g, const unsigned long sz,
+ const unsigned nPseudo, std::vector<double>* stats) const
+ {
+ if (!sz) throw std::invalid_argument(
+ "In npstat::AbsUnbinnedGOFTest1D::simulateStatistic: "
+ "sample size must be positive");
+ if (nPseudo < 2U) std::invalid_argument(
+ "In npstat::AbsUnbinnedGOFTest1D::simulateStatistic: "
+ "insufficient number od pseudo experiments");
+ assert(stats);
+ stats->clear();
+ stats->reserve(nPseudo);
+
+ std::vector<double> sampleVec(sz);
+ double* sample = &sampleVec[0];
+ for (unsigned ips=0; ips<nPseudo; ++ips)
+ {
+ for (unsigned long i=0; i<sz; ++i)
+ distro_->random(g, sample+i);
+ stats->push_back(this->testStatistic(sample, sz));
+ }
+ std::sort(stats->begin(), stats->end());
+ }
+}
Index: trunk/npstat/stat/OrthoPolyGOFTest1D.cc
===================================================================
--- trunk/npstat/stat/OrthoPolyGOFTest1D.cc (revision 0)
+++ trunk/npstat/stat/OrthoPolyGOFTest1D.cc (revision 736)
@@ -0,0 +1,12 @@
+#include "npstat/stat/OrthoPolyGOFTest1D.hh"
+#include "npstat/stat/Distributions1D.hh"
+
+namespace npstat {
+ double OrthoPolyGOFTest1D::analyticPValue(
+ const double stat, unsigned long /* sz */) const
+ {
+ // ndof = 2*maxdeg_
+ Gamma1D chisq(0.0, 2.0, maxdeg_);
+ return chisq.exceedance(stat);
+ }
+}
Index: trunk/NEWS
===================================================================
--- trunk/NEWS (revision 735)
+++ trunk/NEWS (revision 736)
@@ -1,823 +1,823 @@
Version 5.3.0 - development
* Added some facilities for quadruple precision calculations. They
mostly rely on the __float128 type (gcc extension, libquadmath) and
on compiling the LAPACK/BLAS libraries with the "-freal-8-real-16"
switch.
* Added the "GaussLegendreQuadratureQ" class capable of performing
Gauss-Legendre quadratures in quadruple precision.
* Added the "GaussLegendreQuadrature2D" class capable of performing
tensor-product Gauss-Legendre quadratures in two dimensions.
* Added OrthoPoly1DDeg functor.
* Added class ScalableClassicalOrthoPoly1D.
* Added class ClassicalOrthoPoly1DFromWeight. This also necessitated
refactoring of the class DensityOrthoPoly1D.
* Added classes AbsIntervalQuadrature1D and RectangleQuadrature1D.
* Added function "kernelSensitivityMatrix".
* Added function "sumOfSquares".
* Added a number of .i files.
-* Added class OrthoPolyGOFTest.
+* Added classes AbsUnbinnedGOFTest1D and OrthoPolyGOFTest1D.
* Added class PolynomialDistro1D.
Version 5.2.0 - July 20 2020, by I. Volobouev
* Added a number of .i files.
* Added classes "DiscreteGauss1DBuilder" and "DiscreteGaussCopulaSmoother".
* Added class "MatrixFilter1DBuilder".
* Added facilities for saddlepoint approximations: classes AbsCGF1D and
SeriesCGF1D, function saddlepointDistribution1D, as well as class
ExpTiltedDistribution1D which can be useful in saddlepoint approximation
precision studies.
* Added class "DensityOrthoPoly1D" for building orthonormal polynomial
systems using (almost) arbitrary 1-d densities as weights.
* Added "empiricalMoment" method to the AbsDistribution1D class.
* Added class "HeatEq1DNeumannBoundary".
* Added methods "sampleAverages" and "sampleProductAverages" to the
ContOrthoPoly1D class.
* Added method "expectation" to the AbsDistribution1D class.
Version 5.1.0 - Nov 17 2019, by I. Volobouev
* Started using python-specific features (pythonprepend, etc) in the
SWIG .i files.
* Added function "scannedKSDistance".
* Added Python API for persistence of several classes.
Version 5.0.0 - Oct 17 2019, by I. Volobouev
* C++11 support is now mandatory.
* Added more classes and functions to Python API. Overhauled some of
the existing interfaces. Updated everything to python3.
* Increased the maximum order of "classical" Edgeworth expansions to 14.
* Increased the maximum order of conversions between 1-d central moments
and cumulants to 20.
* Added "histoQuantiles" function.
* Added "correctDensityEstimateGHU" function.
* Added "randomHistoFill1D" utility function.
* Added ComparisonDistribution1D class.
* Added classes GaussND, LinTransformedDistroND, and DistributionMixND.
* Added a lot of SWIG .i files
Version 4.11.0 - July 22 2019, by I. Volobouev
* Added support for cumulant calculations for various Wald statistics
in the Poisson process model.
* Added functions convertCumulantsToCentralMoments and
convertCentralMomentsToCumulants (header file cumulantConversion.hh).
* Added function "cumulantUncertainties".
Version 4.10.0 - July 11 2019, by I. Volobouev
* Added SemiInfGaussianQuadrature class.
* Added functions arrayMoment, arrayMoments, and arrayCentralMoments.
* Added enum EdgeworthSeriesMethod and class EdgeworthSeries1D.
* Added DeltaMixture1D class.
* Added enum LikelihoodStatisticType.
* Added functions "mixtureModelCumulants" and "poissonProcessCumulants"
in the header likelihoodStatisticCumulants.hh.
Version 4.9.0 - Dec 18 2018, by I. Volobouev
* Added "integratePoly" and "jointIntegral" methods to the
AbsClassicalOrthoPoly1D class.
* Added utility functions "truncatedInverseSqrt" and "matrixIndexPairs".
* Added a number of functions to "orthoPoly1DVProducts.hh".
* Added classes ChebyshevOrthoPoly1st and ChebyshevOrthoPoly2nd inheriting
from AbsClassicalOrthoPoly1D.
* Added class HermiteProbOrthoPoly1D.
* Added FejerQuadrature class.
* Added classe IsoscelesTriangle1D and Logistic1D.
* Added classes AbsKDE1DKernel and KDE1DHOSymbetaKernel.
* Added static function "optimalDegreeHart" to OSDE1D class.
Version 4.8.0 - Jul 9 2018, by I. Volobouev
* Added ShiftedLegendreOrthoPoly1D class.
* Added Lanczos method to generate recurrence coefficients for the
ContOrthoPoly1D class.
* Added npstat/stat/orthoPoly1DVProducts.hh file with various utilities
for statistical analyis of chaos polynomials.
Version 4.7.0 - Jan 13 2018, by I. Volobouev
* Added "UniPareto1D" distribution (uniform with Pareto tail to the right).
* More coordinate/weight cases for the GaussLegendreQuadrature class.
* Added ContOrthoPoly1D class -- continuous orthogonal polynomials with
discrete measure.
* Added functions "linearLeastSquares" and "tdSymEigen" to the Matrix class.
* Added OSDE1D class.
* Added classes LocationScaleFamily1D and SinhAsinhTransform1D.
* Added new functors (CdfFunctor1D, etc) as AbsDistribution1D helpers.
* Small fix in StatAccumulatorArr.cc.
Version 4.6.0 - Jan 23 2017, by I. Volobouev
* Updated 1-d LOrPE cross validation code (classes AbsBandwidthCV,
BandwidthCVLeastSquares1D, BandwidthCVPseudoLogli1D) for use with
weighted samples in the case the sample itself is available at the
point cross validation is run.
Version 4.5.0 - Aug 01 2016, by I. Volobouev
* A small fix in OrthoPolyND.icc (switched from cycling over unsigned to
unsigned long in the scalar product function).
* Implemented Gauss-Hermite quadrature with Gaussian density weight.
* Changed the meaning of Quadratic1D and LogQuadratic1D parameters to be
consistent with Legendre polynomial coefficients on [-1, 1] (new
parameters are 1/2 of old).
* Added class MinuitUnbinnedFitFcn1D (to interfaces).
* Added function "findRootNewtonRaphson".
* Added "statUncertainties" header with various functions.
Version 4.4.0 - May 9 2016, by I. Volobouev
* Added "timestamp" function.
* Improved implementation of BinnedDensity1D::unscaledQuantile function.
Certain problems caused by round-off errors are now fixed.
* Added the capability to use the single closest parameter cells (thus
disabling actual interpolation between parameter values, for speed)
to "GridInterpolatedDistribution".
Version 4.3.0 - March 19 2016, by I. Volobouev
* Put additional assert statements inside OrthoPolyND.icc to prevent
phony "array subscript is above array bounds" messages in g++ 4.9.2.
* Improved CmdLine.hh.
* Additional methods in CopulaInterpolationND and GridInterpolatedDistribution.
* Added function "volumeDensityFromBinnedRadial".
* Added convenience method "globalFilter" to the OrthoPoly1D class.
* Initiated the transition of the Python API from Python 2 to Python 3.
Version 4.2.0 - October 29 2015, by I. Volobouev
* Added interpolation methods for the marginals to classes
"CopulaInterpolationND" and "GridInterpolatedDistribution".
* Removed assert on underflow in the "igamc" function. Now
in such cases this function simply returns 0.0.
Version 4.1.0 - July 27 2015, by I. Volobouev
* Made a few additional methods virtual in AbsNtuple.
* Declared methods "columnIndices" of AbsNtuple const (as they should be).
* Added function "weightedCopulaHisto" to build copulas for samples of
weighted points.
* Added function "weightedVariableBandwidthSmooth1D" to use variable
bandwidth smoothing with weighted histograms.
* Added "AbsWeightedMarginalSmoother" interface class for smoothing samples
of weighted points. Modified classes ConstantBandwidthSmoother1D,
JohnsonKDESmoother, and LOrPEMarginalSmoother to support this interface.
* Added class "VariableBandwidthSmoother1D" which implements both
AbsMarginalSmoother and AbsWeightedMarginalSmoother interfaces.
* Implemented cross-validation for weighted samples.
* Implemented "buildInterpolatedCompositeDistroND" for generic construction
of multivariate transfer functions.
* Implemented "buildInterpolatedDistro1DNP" for generic construction
of univariate transfer functions.
Version 4.0.1 - June 17 2015, by I. Volobouev
* Added "dump_qmc" example executable.
Version 4.0.0 - June 10 2015, by I. Volobouev
* Complete overhaul of 1-d filter-building code. Addition of new boundary
methods is a lot easier now. The user API for choosing a LOrPE boundary
method is encapsulated in the new "BoundaryHandling" class.
* Implemented a number of new filter builders with different boundary
treatments.
* Updated the "LocalPolyFilter1D" class so that it holds the local
bandwidth factors derived by the filter builders.
Version 3.8.0 - June 1 2015, by I. Volobouev
* Implemented class ConstSqFilter1DBuilder (declared in the header file
npstat/stat/Filter1DBuilders.hh). The "BoundaryMethod" enum has been
extended accordingly. Other files using this enum have been updated.
* Implemented class FoldingSqFilter1DBuilder. Similar to ConstSqFilter1DBuilder
but it also folds the kernel in addition to stretching it.
* Added virtual destructors to a number of classes.
* Added "externalMemArrayND" with various signatures to allow the use of
ArrayND with memory not managed by ArrayND.
* Added move constructors and move assignment operators to ArrayND and
Matrix classes.
Version 3.7.0 - May 10 2015, by I. Volobouev
* Better numerical derivative calculation in InterpolatedDistribution1D.cc.
* Added class "LocalMultiFilter1D" for fast generation of filters which
correspond to each orthogonal polynomial separately.
* Added a function calculating the area of n-dimensional sphere.
* Added I/O capabilities to the RadialProfileND class.
* Added class "LogRatioTransform1D".
* Added utility function "multiFill1DHistoWithCDFWeights" (header file
histoUtils.hh).
* Avoiding underflow of the incomplete gamma in "convertToSphericalRandom".
Version 3.6.0 - April 6 2015, by I. Volobouev
* Fixed Marsaglia's code calculating the Anderson-Darling statistics
(it was breaking down for large values of z).
* Added high-level driver function "simpleVariableBandwidthSmooth1D" to
automatically build the pilot estimate for "variableBandwidthSmooth1D".
* Swithched to log of sigma as Minuit parameter in "minuitFitJohnsonCurves"
instead of sigma (linear sigma would sometimes break the fit when Minuit
would come up with 0 or negative trial value for it).
* Extended "MinuitDensityFitFcn1D" class so that it could be used to fit
non-uniformly binned histograms.
* Adapted "minuitFitJohnsonCurves" function so that it could be used with
histograms templated upon DualHistoAxis.
* Added functions "fillArrayCentersPreservingAreas" and
"canFillArrayCentersPreservingAreas".
* Implemented an interface to monotonous coordinate transformations with
the intent of using them in constructing densities. Implemented a number
of transforms.
* Implemented class "TransformedDistribution1D".
* Added class "VerticallyInterpolatedDistro1D1P".
* Added utility function "fill1DHistoWithCDFWeights".
Version 3.5.0 - February 21 2015, by I. Volobouev
* Added "symPDEigenInv" method to the Matrix class.
* Added "variableCount" method to unfolding bandwidth scanner classes.
* Increased the tolerance parameters in JohnsonSu::initialize and in
JohnsonFit constructor.
* Bug fix in function "fillHistoFromText".
Version 3.4.4 - January 13 2015, by I. Volobouev
* Corrected handling of some "assert" statements so that the code compiles
correctly with the -DNDEBUG option.
Version 3.4.3 - January 5 2015, by I. Volobouev
* Implemented class MirroredGauss1D.
* Added method "getOracleData" to class UnfoldingBandwidthScanner1D.
* Bug fix in FoldingFilter1DBuilder::makeOrthoPoly.
Version 3.4.2 - December 15 2014, by I. Volobouev
* Implemented InterpolatedDistro1D1P class.
Version 3.4.1 - November 07 2014, by I. Volobouev
* Implemented "divideTransforms" function for deconvolutions.
* Implemented the Moyal distribution.
* Added "fillHistoFromText" utility function.
* Added "apply_lorpe_1d" example.
Version 3.4.0 - October 01 2014, by I. Volobouev
* Implemented Hadamard product and Hadamard ratio for matrices.
* Bug fix in the "solve_linear_system" lapack interface function.
Version 3.3.1 - August 08 2014, by I. Volobouev
* Terminate iterative refinement of the unfolding error propagation
matrix early in case the solution does not seem to improve.
Version 3.3.0 - August 05 2014, by I. Volobouev
* Added correction factors to the determination of the number of fitted
parameters in various unfolding procedures.
Version 3.2.0 - July 25 2014, by I. Volobouev
* Added "gaussianResponseMatrix" function for non-uniform binning.
* Added Pareto distribution.
* Implemented EMS unfolding with sparse matrices.
* Added methods "getObservedShape" and "getUnfoldedShape" to the AbsUnfoldND
class.
* Bug fix in the assignment operator of ProductDistributionND class. Made
class ProductDistributionND persistent.
* Bug fix in the error propagation for unfolding, in the code which takes
into account the extra normalization constant.
* Added "productResponseMatrix" function to assist in making sparse response
matrices.
* Bug fix in the factory constructor of the Cauchy1D class.
* Completed implementation of the "RatioOfNormals" class.
Version 3.1.0 - June 29 2014, by I. Volobouev
* Improved (again) random number generator for the 1-d Gaussian distribution.
Something about expectation values of normalized Hermite polynomials over
random numbers made by this generator is still not fully understood. The
standard deviation of these expectations decreases with the polynomial
order (while it should stay constant). It is possible that the numbers
of points used are simply insufficient to sample the tails correctly.
* Implemented smoothed expectation-maximization (a.k.a. D'Agostini) unfolding
for 1-d distributions in classes SmoothedEMUnfold1D and MultiscaleEMUnfold1D.
In certain usage scenarios, MultiscaleEMUnfold1D can be more efficient than
SmoothedEMUnfold1D.
* Implemented smoothed expectation-maximization unfolding for multivariate
distributions in a class SmoothedEMUnfoldND.
* Added class "UnfoldingBandwidthScanner1D" to study 1-d unfolding behavior
as a function of filter bandwidth.
* Added class "UnfoldingBandwidthScannerND" to study multivariate unfolding
behavior as a function of provided bandwidth values.
* Added DummyLocalPolyFilter1D class useful when a filter is needed which
does not smooth anything.
* Added function "poissonLogLikelihood" (header file npstat/stat/arrayStats.hh).
* Added function "pooledDiscreteTabulated1D" (header file
npstat/stat/DiscreteDistributions1D.hh).
* Implemented class UGaussConvolution1D (convolution of uniform distribution
with a Gaussian).
* Implemented gamma distribution (class Gamma1D).
* Defined interface for comparing binned distributions, AbsBinnedComparison1D.
* Implemented several comparison classes for comparing binned distributions:
PearsonsChiSquared, BinnedKSTest1D, BinnedADTest1D. Class BinnedKSTest1D
pulled in dependence on the "kstest" package.
* Made classes LocalPolyFilter1D, LocalPolyFilterND, and SequentialPolyFilterND
persistent.
* Added code generating dense filter matrices to LocalPolyFilterND and
SequentialPolyFilterND (as needed for unfolding).
* Made class MemoizingSymbetaFilterProvider persistent.
* Implemented function goldenSectionSearchOnAGrid (header file
npstat/nm/goldenSectionSearch.hh).
* Implemented function parabolicExtremum (header npstat/nm/MathUtils.hh).
* Added class DistributionMix1D (header npstat/stat/DistributionMix1D.hh).
* Added interface to solving A*X = B, with matrices X and B, to the Matrix
class (method "solveLinearSystems").
* Added "reshape" methods to the ArrayND class.
* Added "gaussianResponseMatrix" function.
* Added a section on unfolding to the documentation.
* Added "ems_unfold_1d" example program.
Version 3.0.0 - March 14 2014, by I. Volobouev
* Added interface to the LAPACK SVD routines.
* Added function "lorpeMise1D" to calculate MISE for arbitrary distributions.
* Added FoldingFilter1DBuilder class.
* Changed interfaces for several high-level functions to use
FoldingFilter1DBuilder. The major version number got bumped up.
* Split DensityScan1D.hh away from AbsDistribution1D.hh.
Version 2.7.0 - March 10 2014, by I. Volobouev
* Added code to optimize operations with diagonal matrices.
* Added discretizedDistance.hh file for simple L1 and L2 distance calculations
with numeric arrays.
* Added base class for future unfolding code.
* The "reset" method of the Matrix class was renamed into "uninitialize"
in order to be consistent with ArrayND.
* Added function "multinomialCovariance1D".
* Added "polyTimesWeight" method to the OrthoPoly1D class.
* Added methods "TtimesThis" and "timesT" to the Matrix class. These
methods are more efficient than transpose followed by multiplication.
Version 2.6.0 - January 30 2014, by I. Volobouev
* Added function "lorpeBackgroundCVDensity1D" which linearizes calculation
of the cross validation likelihood in semiparametric fits. Argument
"linearizeCrossValidation" was added to MinuitSemiparametricFitFcn1D
constructor, "lorpeBackground1D" function, etc.
* Added the ability to build filters with center point removed to classes
WeightTableFilter1DBuilder and StretchingFilter1DBuilder. The function
"symbetaLOrPEFilter1D" now has an appropriate switch.
* Added "removeRowAndColumn" method to the Matrix class.
* Added CircularBuffer class.
* Added various plugin bandwidth functions which work with non-integer
polynomial degrees.
* Switched to the Legendre polynomial basis for calculating all 1-d
orthogonal polynomials (instead of monomial basis).
* Added MemoizingSymbetaFilterProvider class.
* Added "operator+=" method to the MultivariateSumAccumulator class.
* Simplified implementation of the PolyFilterCollection1D class.
File PolyFilterCollection1D.icc is removed.
* Added "RatioOfNormals" 1-d distribution function. Only the density is
currently implemented but not the CDF.
* Added ExpMapper1d class.
Version 2.5.0 - October 15 2013, by I. Volobouev
* Added "getFilterMatrix" method to the LocalPolyFilter1D class.
* Added "genEigen" method to the Matrix class (for determination of
eigenvalues and eigenvectors of general real matrices).
* Refactored the LAPACK interface so that interface functions to floats
are automatically generated from interface functions to doubles. See
the comment at the end of the "lapack_interface.icc" file for the shell
commands to do this.
Version 2.4.0 - October 6 2013, by I. Volobouev
* Added functions "lorpeBackground1D", "lorpeBgCVPseudoLogli1D", and
"lorpeBgLogli1D".
* Added minuit interface classes "MinuitLOrPEBgCVFcn1D" and
"MinuitSemiparametricFitFcn1D".
* Added "ScalableDensityConstructor1D" class for use with Minuit interface
functions.
* Added classes AbsSymbetaFilterProvider and SymbetaPolyCollection1D.
Version 2.3.0 - October 1 2013, by I. Volobouev
* Allowed point dimensionality to be larger than the histogram dimensionality
in the "empiricalCopulaHisto" function.
* Added "keepAllFilters" method to AbsFilter1DBuilder and all derived classes.
* Implemented exclusion regions for WeightTableFilter1DBuilder and
StretchingFilter1DBuilder.
* "symbetaLOrPEFilter1D" function (in the header LocalPolyFilter1D.hh)
is updated to take the exclusion mask argument.
* Added "continuousDegreeTaper" function which can do something meaningful
with the continuous LOrPE degree parameter.
Version 2.2.0 - June 30 2013, by I. Volobouev
* Added classes DiscreteBernsteinPoly1D and BernsteinFilter1DBuilder.
* Added classes DiscreteBeta1D and BetaFilter1DBuilder.
* Added BifurcatedGauss1D class to model Gaussian-like distributions with
different sigmas on the left and right sides.
* Added virtual destructors to the classes declared in the Filter1DBuilders.hh
header.
* Added a method to the Matrix template to calculate Frobenius norm.
* Added methods to the Matrix template to calculate row and column sums.
* Added "directSum" method to the Matrix template.
* Added constructor from a subrange of another matrix to the Matrix template.
* Added code to the LocalPolyFilter1D class that generates a doubly
stochastic filter out of an arbitrary filter.
* Added "npstat/nm/definiteIntegrals.hh" header and corresponding .cc file
for various infrequently used integrals.
* Added "betaKernelsBandwidth" function.
Version 2.1.0 - June 20 2013, by I. Volobouev
* Fixed couple problems which showed up in the robust regression code
due to compiler update.
* Fixed CensoredQuantileRegressionOnKDTree::process method (needed this->
dereference for some member).
Version 2.0.0 - June 15 2013, by I. Volobouev
* Updated to use "Geners" version 1.3.0. A few interfaces were changed
(API for the string archives was removed because Geners own string archive
facilities are now adequate) so the major version number was bumped up.
Version 1.6.0 - June 12 2013, by I. Volobouev
* Updated some documentation.
* Updated fitCompositeJohnson.icc to use simplified histogram constructors.
* Bug fix in the "minuitLocalQuantileRegression1D" function.
* Changed the "quantileBinFromCdf" function to use unsigned long type for
array indices.
* Added "weightedLocalQuantileRegression1D" function (namespace npsi) for
local regression with single predictor on weighted points.
Version 1.5.0 - May 23 2013, by I. Volobouev
* Added interfaces to LAPACK routines DSYEVD, DSYEVR, and corresponding
single precision versions.
* Added the "symPSDefEffectiveRank" method to the Matrix class for
calculating effective ranks of symmetric positive semidefinite matrices.
* Added converting constructor and assignment operator to the Matrix class.
* Run the Gram-Schmidt procedure twice when orthogonal polynomials are
derived in order to improve orthogonality.
Version 1.4.0 - May 20 2013, by I. Volobouev
* Added the "append" method to the AbsNtuple class.
Version 1.3.0 - May 10 2013, by I. Volobouev
* Added the code for Hermite polynomial series.
* Improved random number generator for the 1-d Gaussian distribution.
* Added a framework for discrete 1-d distributions as well as two
concrete distribution classes (Poisson1D, DiscreteTabulated1D).
* Added functions "readCompressedStringArchiveExt" and
"writeCompressedStringArchiveExt" which can read/write either compressed
or uncompressed string archives, distinguished by file extension.
Version 1.2.1 - March 22 2013, by I. Volobouev
* Improved CmdLine.hh in the "examples/C++" directory.
* Added class QuantileTable1D.
* Added classes LeftCensoredDistribution and RightCensoredDistribution.
Version 1.2.0 - March 13 2013, by I. Volobouev
* Added convenience "fill" methods to work with the ntuples which have
small number of columns (up to 10).
* Fixed a bug in AbsRandomGenerator for univariate generators making
multivariate points.
* Added LOrPEMarginalSmoother class.
Version 1.1.1 - March 11 2013, by I. Volobouev
* Added utility function "symbetaLOrPEFilter1D" which creates 1-d LOrPE
filters using kernels from the symmetric beta family (and the Gaussian).
* Added high level driver function "lorpeSmooth1D".
* Allowed variables with zero variances for calculation of correlation
coefficients in "MultivariateSumsqAccumulator". Such variables will
have zero correlation coefficients with all other variables.
* Added rebinning constructor to the HistoND class.
Version 1.1.0 - March 8 2013, by I. Volobouev
* Changed NUHistoAxis::fltBinNumber method to produce correct results
with interpolation degree 0. It is not yet obvious which method would
work best for higher interpolation degrees.
* Added functions for converting between StringArchive and python bytearray.
They have been placed in a new header: wrap/stringArchiveToBinary.hh.
* Added methods "exportMemSlice" and "importMemSlice" to ArrayND. These
methods allow for filling array slices from unstructured memory buffers
and for exporting array slices to such memory buffers.
* Added "simpleColumnNames" function (header file AbsNtuple.hh) to generate
trivial column names when ntuple column names are not important.
* Added functions "neymanPearsonWindow1D" and "signalToBgMaximum1D".
They are declared in a new header npstat/neymanPearsonWindow1D.hh.
Version 1.0.5 - December 17 2012, by I. Volobouev
* Flush string archives before writing them out in stringArchiveIO.cc.
* Added class TruncatedDistribution1D.
Version 1.0.4 - November 14 2012, by I. Volobouev
* Added utilities for reading/writing Geners string archives to files.
* Added BinSummary class.
* Doxygen documentation improved. Every header file in stat, nm, rng,
and interfaces now has a brief description.
Version 1.0.3 - September 27 2012, by I. Volobouev
* Fixed some bugs related to moving StorableMultivariateFunctor code
from "nm" to "stat".
Version 1.0.2 - August 6 2012, by I. Volobouev
* Added converting copy constructor to the "LinInterpolatedTableND" class.
* Added StorableMultivariateFunctor class (together with the corresponding
reader class).
* Added StorableInterpolationFunctor class which inherits from the above
and can be used with interpolation tables.
* Added StorableHistoNDFunctor class which inherits from
StorableMultivariateFunctor and can be used to interpolate histogram bins.
* Added "transpose" method to HistoND class.
* Created DualAxis class.
* Created DualHistoAxis class.
* Added conversion functions between histogram and grid axes.
* Added "mergeTwoHistos" function for smooth merging of two histograms.
* Added "ProductSymmetricBetaNDCdf" functor to be used as weight in
merging histograms.
* Added CoordinateSelector class.
Version 1.0.1 - June 29 2012, by I. Volobouev
* Implemented class LinInterpolatedTableND with related supporting code.
Index: trunk/config.log
===================================================================
--- trunk/config.log (revision 735)
+++ trunk/config.log (revision 736)
@@ -1,943 +1,943 @@
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by npstat configure 5.3.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --disable-static --with-pic
## --------- ##
## Platform. ##
## --------- ##
hostname = dawn
uname -m = x86_64
uname -r = 4.15.0-122-generic
uname -s = Linux
uname -v = #124-Ubuntu SMP Thu Oct 15 13:03:05 UTC 2020
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /home/igv/bin
PATH: /home/igv/local/bin
PATH: /usr/local/anaconda3/bin
PATH: /usr/local/bin
PATH: /usr/local/root/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /sbin
PATH: /usr/sbin
PATH: .
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2421: checking for a BSD-compatible install
configure:2489: result: /usr/bin/install -c
configure:2500: checking whether build environment is sane
configure:2555: result: yes
configure:2706: checking for a thread-safe mkdir -p
configure:2745: result: /bin/mkdir -p
configure:2752: checking for gawk
configure:2768: found /usr/bin/gawk
configure:2779: result: gawk
configure:2790: checking whether make sets $(MAKE)
configure:2812: result: yes
configure:2841: checking whether make supports nested variables
configure:2858: result: yes
configure:3042: checking for pkg-config
configure:3060: found /usr/bin/pkg-config
configure:3072: result: /usr/bin/pkg-config
configure:3097: checking pkg-config is at least version 0.9.0
configure:3100: result: yes
configure:3110: checking for DEPS
configure:3117: $PKG_CONFIG --exists --print-errors "fftw3 >= 3.1.2 geners >= 1.3.0 kstest >= 2.0.0"
configure:3120: $? = 0
configure:3134: $PKG_CONFIG --exists --print-errors "fftw3 >= 3.1.2 geners >= 1.3.0 kstest >= 2.0.0"
configure:3137: $? = 0
configure:3195: result: yes
configure:3258: checking for g++
configure:3274: found /usr/bin/g++
configure:3285: result: g++
configure:3312: checking for C++ compiler version
configure:3321: g++ --version >&5
g++ (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3332: $? = 0
configure:3321: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
configure:3332: $? = 0
configure:3321: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:3332: $? = 1
configure:3321: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:3332: $? = 1
configure:3352: checking whether the C++ compiler works
configure:3374: g++ -std=c++11 -O3 -Wall -W -Werror conftest.cpp >&5
configure:3378: $? = 0
configure:3426: result: yes
configure:3429: checking for C++ compiler default output file name
configure:3431: result: a.out
configure:3437: checking for suffix of executables
configure:3444: g++ -o conftest -std=c++11 -O3 -Wall -W -Werror conftest.cpp >&5
configure:3448: $? = 0
configure:3470: result:
configure:3492: checking whether we are cross compiling
configure:3500: g++ -o conftest -std=c++11 -O3 -Wall -W -Werror conftest.cpp >&5
configure:3504: $? = 0
configure:3511: ./conftest
configure:3515: $? = 0
configure:3530: result: no
configure:3535: checking for suffix of object files
configure:3557: g++ -c -std=c++11 -O3 -Wall -W -Werror conftest.cpp >&5
configure:3561: $? = 0
configure:3582: result: o
configure:3586: checking whether we are using the GNU C++ compiler
configure:3605: g++ -c -std=c++11 -O3 -Wall -W -Werror conftest.cpp >&5
configure:3605: $? = 0
configure:3614: result: yes
configure:3623: checking whether g++ accepts -g
configure:3643: g++ -c -g conftest.cpp >&5
configure:3643: $? = 0
configure:3684: result: yes
configure:3718: checking for style of include used by make
configure:3746: result: GNU
configure:3772: checking dependency style of g++
configure:3883: result: gcc3
configure:3952: checking for g77
configure:3968: found /home/igv/bin/g77
configure:3979: result: g77
configure:4005: checking for Fortran 77 compiler version
configure:4014: g77 --version >&5
GNU Fortran (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:4025: $? = 0
configure:4014: g77 -v >&5
Using built-in specs.
COLLECT_GCC=g77
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
configure:4025: $? = 0
configure:4014: g77 -V >&5
g77: error: unrecognized command line option '-V'
g77: fatal error: no input files
compilation terminated.
configure:4025: $? = 1
configure:4014: g77 -qversion >&5
g77: error: unrecognized command line option '-qversion'; did you mean '--version'?
g77: fatal error: no input files
compilation terminated.
configure:4025: $? = 1
configure:4034: checking whether we are using the GNU Fortran 77 compiler
configure:4047: g77 -c conftest.F >&5
configure:4047: $? = 0
configure:4056: result: yes
configure:4062: checking whether g77 accepts -g
configure:4073: g77 -c -g conftest.f >&5
configure:4073: $? = 0
configure:4081: result: yes
configure:4114: checking build system type
configure:4128: result: x86_64-pc-linux-gnu
configure:4148: checking host system type
configure:4161: result: x86_64-pc-linux-gnu
configure:4186: checking how to get verbose linking output from g77
configure:4196: g77 -c -g -O2 conftest.f >&5
configure:4196: $? = 0
configure:4214: g77 -o conftest -g -O2 -v conftest.f
Using built-in specs.
Target: x86_64-linux-gnu
Thread model: posix
gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
- /usr/lib/gcc/x86_64-linux-gnu/7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/7/finclude -o /tmp/cc0zluAb.s
+ /usr/lib/gcc/x86_64-linux-gnu/7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/7/finclude -o /tmp/cc2cniMf.s
GNU Fortran (Ubuntu 7.5.0-3ubuntu1~18.04) version 7.5.0 (x86_64-linux-gnu)
compiled by GNU C version 7.5.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.19-GMP
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (Ubuntu 7.5.0-3ubuntu1~18.04) version 7.5.0 (x86_64-linux-gnu)
compiled by GNU C version 7.5.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.19-GMP
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
- as -v --64 -o /tmp/cch5QJKW.o /tmp/cc0zluAb.s
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GNU assembler version 2.30 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.30
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/7/libgfortran.spec
rename spec lib to liborig
- /usr/lib/gcc/x86_64-linux-gnu/7/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/7/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper -plugin-opt=-fresolution=/tmp/ccci6OVH.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. /tmp/cch5QJKW.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o
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configure:4297: result: -v
configure:4299: checking for Fortran 77 libraries of g77
configure:4322: g77 -o conftest -g -O2 -v conftest.f
Using built-in specs.
Target: x86_64-linux-gnu
Thread model: posix
gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
- /usr/lib/gcc/x86_64-linux-gnu/7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/7/finclude -o /tmp/ccm03O9b.s
+ /usr/lib/gcc/x86_64-linux-gnu/7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/7/finclude -o /tmp/cc4lqRPi.s
GNU Fortran (Ubuntu 7.5.0-3ubuntu1~18.04) version 7.5.0 (x86_64-linux-gnu)
compiled by GNU C version 7.5.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.19-GMP
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (Ubuntu 7.5.0-3ubuntu1~18.04) version 7.5.0 (x86_64-linux-gnu)
compiled by GNU C version 7.5.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.19-GMP
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
- as -v --64 -o /tmp/ccQ6aOsX.o /tmp/ccm03O9b.s
+ as -v --64 -o /tmp/cct7BU1O.o /tmp/cc4lqRPi.s
GNU assembler version 2.30 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.30
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/7/libgfortran.spec
rename spec lib to liborig
- /usr/lib/gcc/x86_64-linux-gnu/7/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/7/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper -plugin-opt=-fresolution=/tmp/cchqRzMI.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. /tmp/ccQ6aOsX.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o
+ /usr/lib/gcc/x86_64-linux-gnu/7/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/7/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper -plugin-opt=-fresolution=/tmp/ccZV0Iel.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. /tmp/cct7BU1O.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o
configure:4518: result: -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath
configure:4580: checking how to print strings
configure:4607: result: printf
configure:4676: checking for gcc
configure:4692: found /usr/bin/gcc
configure:4703: result: gcc
configure:4932: checking for C compiler version
configure:4941: gcc --version >&5
gcc (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:4952: $? = 0
configure:4941: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
configure:4952: $? = 0
configure:4941: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4952: $? = 1
configure:4941: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:4952: $? = 1
configure:4956: checking whether we are using the GNU C compiler
configure:4975: gcc -c conftest.c >&5
configure:4975: $? = 0
configure:4984: result: yes
configure:4993: checking whether gcc accepts -g
configure:5013: gcc -c -g conftest.c >&5
configure:5013: $? = 0
configure:5054: result: yes
configure:5071: checking for gcc option to accept ISO C89
configure:5134: gcc -c -g -O2 conftest.c >&5
configure:5134: $? = 0
configure:5147: result: none needed
configure:5172: checking whether gcc understands -c and -o together
configure:5194: gcc -c conftest.c -o conftest2.o
configure:5197: $? = 0
configure:5194: gcc -c conftest.c -o conftest2.o
configure:5197: $? = 0
configure:5209: result: yes
configure:5228: checking dependency style of gcc
configure:5339: result: gcc3
configure:5354: checking for a sed that does not truncate output
configure:5418: result: /bin/sed
configure:5436: checking for grep that handles long lines and -e
configure:5494: result: /bin/grep
configure:5499: checking for egrep
configure:5561: result: /bin/grep -E
configure:5566: checking for fgrep
configure:5628: result: /bin/grep -F
configure:5663: checking for ld used by gcc
configure:5730: result: /usr/bin/ld
configure:5737: checking if the linker (/usr/bin/ld) is GNU ld
configure:5752: result: yes
configure:5764: checking for BSD- or MS-compatible name lister (nm)
configure:5818: result: /usr/bin/nm -B
configure:5948: checking the name lister (/usr/bin/nm -B) interface
configure:5955: gcc -c -g -O2 conftest.c >&5
configure:5958: /usr/bin/nm -B "conftest.o"
configure:5961: output
0000000000000000 B some_variable
configure:5968: result: BSD nm
configure:5971: checking whether ln -s works
configure:5975: result: yes
configure:5983: checking the maximum length of command line arguments
configure:6114: result: 1572864
configure:6162: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:6202: result: func_convert_file_noop
configure:6209: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:6229: result: func_convert_file_noop
configure:6236: checking for /usr/bin/ld option to reload object files
configure:6243: result: -r
configure:6317: checking for objdump
configure:6333: found /usr/bin/objdump
configure:6344: result: objdump
configure:6376: checking how to recognize dependent libraries
configure:6576: result: pass_all
configure:6661: checking for dlltool
configure:6691: result: no
configure:6721: checking how to associate runtime and link libraries
configure:6748: result: printf %s\n
configure:6809: checking for ar
configure:6825: found /usr/bin/ar
configure:6836: result: ar
configure:6873: checking for archiver @FILE support
configure:6890: gcc -c -g -O2 conftest.c >&5
configure:6890: $? = 0
configure:6893: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:6896: $? = 0
configure:6901: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
ar: conftest.o: No such file or directory
configure:6904: $? = 1
configure:6916: result: @
configure:6974: checking for strip
configure:6990: found /usr/bin/strip
configure:7001: result: strip
configure:7073: checking for ranlib
configure:7089: found /usr/bin/ranlib
configure:7100: result: ranlib
configure:7202: checking command to parse /usr/bin/nm -B output from gcc object
configure:7355: gcc -c -g -O2 conftest.c >&5
configure:7358: $? = 0
configure:7362: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:7365: $? = 0
configure:7431: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:7434: $? = 0
configure:7472: result: ok
configure:7519: checking for sysroot
configure:7549: result: no
configure:7556: checking for a working dd
configure:7594: result: /bin/dd
configure:7598: checking how to truncate binary pipes
configure:7613: result: /bin/dd bs=4096 count=1
configure:7749: gcc -c -g -O2 conftest.c >&5
configure:7752: $? = 0
configure:7942: checking for mt
configure:7958: found /bin/mt
configure:7969: result: mt
configure:7992: checking if mt is a manifest tool
configure:7998: mt '-?'
configure:8006: result: no
configure:8683: checking how to run the C preprocessor
configure:8714: gcc -E conftest.c
configure:8714: $? = 0
configure:8728: gcc -E conftest.c
conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:8728: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "npstat"
| #define PACKAGE_TARNAME "npstat"
| #define PACKAGE_VERSION "5.3.0"
| #define PACKAGE_STRING "npstat 5.3.0"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define PACKAGE "npstat"
| #define VERSION "5.3.0"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8753: result: gcc -E
configure:8773: gcc -E conftest.c
configure:8773: $? = 0
configure:8787: gcc -E conftest.c
conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:8787: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "npstat"
| #define PACKAGE_TARNAME "npstat"
| #define PACKAGE_VERSION "5.3.0"
| #define PACKAGE_STRING "npstat 5.3.0"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define PACKAGE "npstat"
| #define VERSION "5.3.0"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8816: checking for ANSI C header files
configure:8836: gcc -c -g -O2 conftest.c >&5
configure:8836: $? = 0
configure:8909: gcc -o conftest -g -O2 conftest.c >&5
configure:8909: $? = 0
configure:8909: ./conftest
configure:8909: $? = 0
configure:8920: result: yes
configure:8933: checking for sys/types.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for sys/stat.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for stdlib.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for string.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for memory.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for strings.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for inttypes.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for stdint.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8933: checking for unistd.h
configure:8933: gcc -c -g -O2 conftest.c >&5
configure:8933: $? = 0
configure:8933: result: yes
configure:8947: checking for dlfcn.h
configure:8947: gcc -c -g -O2 conftest.c >&5
configure:8947: $? = 0
configure:8947: result: yes
configure:9214: checking for objdir
configure:9229: result: .libs
configure:9493: checking if gcc supports -fno-rtti -fno-exceptions
configure:9511: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:9515: $? = 0
configure:9528: result: no
configure:9886: checking for gcc option to produce PIC
configure:9893: result: -fPIC -DPIC
configure:9901: checking if gcc PIC flag -fPIC -DPIC works
configure:9919: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:9923: $? = 0
configure:9936: result: yes
configure:9965: checking if gcc static flag -static works
configure:9993: result: yes
configure:10008: checking if gcc supports -c -o file.o
configure:10029: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:10033: $? = 0
configure:10055: result: yes
configure:10063: checking if gcc supports -c -o file.o
configure:10110: result: yes
configure:10143: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:11402: result: yes
configure:11439: checking whether -lc should be explicitly linked in
configure:11447: gcc -c -g -O2 conftest.c >&5
configure:11450: $? = 0
configure:11465: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:11468: $? = 0
configure:11482: result: no
configure:11642: checking dynamic linker characteristics
configure:12223: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:12223: $? = 0
configure:12460: result: GNU/Linux ld.so
configure:12582: checking how to hardcode library paths into programs
configure:12607: result: immediate
configure:13155: checking whether stripping libraries is possible
configure:13160: result: yes
configure:13195: checking if libtool supports shared libraries
configure:13197: result: yes
configure:13200: checking whether to build shared libraries
configure:13225: result: yes
configure:13228: checking whether to build static libraries
configure:13232: result: no
configure:13255: checking how to run the C++ preprocessor
configure:13282: g++ -E conftest.cpp
configure:13282: $? = 0
configure:13296: g++ -E conftest.cpp
conftest.cpp:23:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:13296: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "npstat"
| #define PACKAGE_TARNAME "npstat"
| #define PACKAGE_VERSION "5.3.0"
| #define PACKAGE_STRING "npstat 5.3.0"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define PACKAGE "npstat"
| #define VERSION "5.3.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13321: result: g++ -E
configure:13341: g++ -E conftest.cpp
configure:13341: $? = 0
configure:13355: g++ -E conftest.cpp
conftest.cpp:23:10: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
compilation terminated.
configure:13355: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "npstat"
| #define PACKAGE_TARNAME "npstat"
| #define PACKAGE_VERSION "5.3.0"
| #define PACKAGE_STRING "npstat 5.3.0"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define PACKAGE "npstat"
| #define VERSION "5.3.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13517: checking for ld used by g++
configure:13584: result: /usr/bin/ld -m elf_x86_64
configure:13591: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:13606: result: yes
configure:13661: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14734: result: yes
configure:14770: g++ -c -std=c++11 -O3 -Wall -W -Werror conftest.cpp >&5
configure:14773: $? = 0
configure:15254: checking for g++ option to produce PIC
configure:15261: result: -fPIC -DPIC
configure:15269: checking if g++ PIC flag -fPIC -DPIC works
configure:15287: g++ -c -std=c++11 -O3 -Wall -W -Werror -fPIC -DPIC -DPIC conftest.cpp >&5
configure:15291: $? = 0
configure:15304: result: yes
configure:15327: checking if g++ static flag -static works
configure:15355: result: yes
configure:15367: checking if g++ supports -c -o file.o
configure:15388: g++ -c -std=c++11 -O3 -Wall -W -Werror -o out/conftest2.o conftest.cpp >&5
configure:15392: $? = 0
configure:15414: result: yes
configure:15419: checking if g++ supports -c -o file.o
configure:15466: result: yes
configure:15496: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15536: result: yes
configure:15677: checking dynamic linker characteristics
configure:16422: result: GNU/Linux ld.so
configure:16487: checking how to hardcode library paths into programs
configure:16512: result: immediate
configure:16653: checking if libtool supports shared libraries
configure:16655: result: yes
configure:16658: checking whether to build shared libraries
configure:16682: result: yes
configure:16685: checking whether to build static libraries
configure:16689: result: no
configure:17041: checking for g77 option to produce PIC
configure:17048: result: -fPIC
configure:17056: checking if g77 PIC flag -fPIC works
configure:17074: g77 -c -g -O2 -fPIC conftest.f >&5
configure:17078: $? = 0
configure:17091: result: yes
configure:17114: checking if g77 static flag -static works
configure:17142: result: yes
configure:17154: checking if g77 supports -c -o file.o
configure:17175: g77 -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:17179: $? = 0
configure:17201: result: yes
configure:17206: checking if g77 supports -c -o file.o
configure:17253: result: yes
configure:17283: checking whether the g77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:18492: result: yes
configure:18633: checking dynamic linker characteristics
configure:19372: result: GNU/Linux ld.so
configure:19437: checking how to hardcode library paths into programs
configure:19462: result: immediate
configure:19662: checking that generated files are newer than configure
configure:19668: result: done
configure:19695: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by npstat config.status 5.3.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on dawn
config.status:1143: creating Makefile
config.status:1143: creating npstat/nm/Makefile
config.status:1143: creating npstat/rng/Makefile
config.status:1143: creating npstat/stat/Makefile
config.status:1143: creating npstat/wrap/Makefile
config.status:1143: creating npstat/interfaces/Makefile
config.status:1143: creating npstat/emsunfold/Makefile
config.status:1143: creating npstat/Makefile
config.status:1143: creating examples/C++/Makefile
config.status:1143: creating npstat/swig/Makefile
config.status:1143: creating npstat.pc
config.status:1315: executing depfiles commands
config.status:1315: executing libtool commands
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value='-std=c++11 -O3 -Wall -W -Werror'
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_DEPS_CFLAGS_set=
ac_cv_env_DEPS_CFLAGS_value=
ac_cv_env_DEPS_LIBS_set=
ac_cv_env_DEPS_LIBS_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_PKG_CONFIG_LIBDIR_set=
ac_cv_env_PKG_CONFIG_LIBDIR_value=
ac_cv_env_PKG_CONFIG_PATH_set=set
ac_cv_env_PKG_CONFIG_PATH_value=/usr/local/lib/pkgconfig
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_f77_libs=' -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath'
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_ac_pt_PKG_CONFIG=/usr/bin/pkg-config
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_F77=g77
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f77_v=-v
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_F77=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_pic_works_F77=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_compiler_static_works_F77=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'
pkg_cv_DEPS_CFLAGS=-I/usr/local/include
pkg_cv_DEPS_LIBS='-L/usr/local/lib -lfftw3 -lgeners -lkstest'
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/igv/Hepforge/npstat/trunk/missing aclocal-1.15'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /home/igv/Hepforge/npstat/trunk/missing autoconf'
AUTOHEADER='${SHELL} /home/igv/Hepforge/npstat/trunk/missing autoheader'
AUTOMAKE='${SHELL} /home/igv/Hepforge/npstat/trunk/missing automake-1.15'
AWK='gawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPP='gcc -E'
CPPFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-std=c++11 -O3 -Wall -W -Werror'
CYGPATH_W='echo'
DEFS='-DPACKAGE_NAME=\"npstat\" -DPACKAGE_TARNAME=\"npstat\" -DPACKAGE_VERSION=\"5.3.0\" -DPACKAGE_STRING=\"npstat\ 5.3.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"npstat\" -DVERSION=\"5.3.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\"'
DEPDIR='.deps'
DEPS_CFLAGS='-I/usr/local/include'
DEPS_LIBS='-L/usr/local/lib -lfftw3 -lgeners -lkstest'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F77='g77'
FFLAGS='-g -O2'
FGREP='/bin/grep -F'
FLIBS=' -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAKEINFO='${SHELL} /home/igv/Hepforge/npstat/trunk/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='npstat'
PACKAGE_BUGREPORT=''
PACKAGE_NAME='npstat'
PACKAGE_STRING='npstat 5.3.0'
PACKAGE_TARNAME='npstat'
PACKAGE_URL=''
PACKAGE_VERSION='5.3.0'
PATH_SEPARATOR=':'
PKG_CONFIG='/usr/bin/pkg-config'
PKG_CONFIG_LIBDIR=''
PKG_CONFIG_PATH='/usr/local/lib/pkgconfig'
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
VERSION='5.3.0'
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_F77='g77'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/igv/Hepforge/npstat/trunk/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "npstat"
#define PACKAGE_TARNAME "npstat"
#define PACKAGE_VERSION "5.3.0"
#define PACKAGE_STRING "npstat 5.3.0"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
#define PACKAGE "npstat"
#define VERSION "5.3.0"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
configure: exit 0

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