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diff --git a/bin/rivet-mkhtml b/bin/rivet-mkhtml
--- a/bin/rivet-mkhtml
+++ b/bin/rivet-mkhtml
@@ -1,314 +1,314 @@
#! /usr/bin/env python
"""\
%prog [options] <yodafile1> [<yodafile2> <yodafile3>...]
Make web pages from histogram files written out by Rivet. You can specify
multiple Monte Carlo YODA files to be compared in the same syntax as for
rivet-cmphistos, i.e. including plotting options.
Reference data, analysis metadata, and plot style information should be found
automatically (if not, set the RIVET_ANALYSIS_PATH or similar variables
appropriately).
You can overwrite an existing output directory.
"""
import rivet, sys, os
rivet.util.check_python_version()
rivet.util.set_process_name(os.path.basename(__file__))
import glob, shutil
from subprocess import Popen, PIPE
from optparse import OptionParser
parser = OptionParser(usage=__doc__)
parser.add_option("-o", "--outputdir", dest="OUTPUTDIR",
default="./plots", help="directory for webpage output")
parser.add_option("-t", "--title", dest="TITLE",
default="Plots from Rivet analyses", help="title to be displayed on the main web page")
parser.add_option("-c", "--config", dest="CONFIGFILES", action="append", default=["~/.make-plots"],
help="plot config file(s) to be used with rivet-cmphistos.")
parser.add_option("-s", "--single", dest="SINGLE", action="store_true",
default=False, help="display plots on single webpage.")
parser.add_option("--no-ratio", dest="SHOW_RATIO", action="store_false",
default=True, help="don't draw a ratio plot under each main plot.")
parser.add_option("--mc-errs", dest="MC_ERRS", action="store_true",
default=False, help="plot error bars.")
parser.add_option("--refid", dest="REF_ID",
default=None, help="ID of reference data set (file path for non-REF data)")
parser.add_option("-n", "--num-threads", metavar="NUMTHREADS", dest="NUMTHREADS", type=int,
default=None, help="request make-plots to use a specific number of threads.")
parser.add_option("--pdf", dest="VECTORFORMAT", action="store_const", const="PDF",
default="PDF", help="use PDF as the vector plot format.")
parser.add_option("--ps", dest="VECTORFORMAT", action="store_const", const="PS",
default="PDF", help="use PostScript as the vector plot format.")
parser.add_option("--booklet", dest="BOOKLET", action="store_true",
default=False, help="create booklet (currently only available for PDF with pdftk).")
parser.add_option("-i", "--ignore-unvalidated", dest="IGNORE_UNVALIDATED", action="store_true",
default=False, help="ignore unvalidated analyses.")
parser.add_option("--ignore-missing", dest="IGNORE_MISSING", action="store_true",
default=False, help="ignore missing YODA files.")
parser.add_option("-m", "--match", action="append", dest="PATHPATTERNS",
help="only write out histograms from analyses whose name matches any of these regexes")
parser.add_option("-M", "--unmatch", action="append", dest="PATHUNPATTERNS",
help="Exclude histograms whose $path/$name string matches these regexes")
parser.add_option("--palatino", dest="OUTPUT_FONT", action="store_const", const="PALATINO", default="PALATINO",
help="Use Palatino as font (default).")
parser.add_option("--cm", dest="OUTPUT_FONT", action="store_const", const="CM", default="PALATINO",
help="Use Computer Modern as font.")
parser.add_option("--times", dest="OUTPUT_FONT", action="store_const", const="TIMES", default="PALATINO",
help="Use Times as font.")
parser.add_option("--minion", dest="OUTPUT_FONT", action="store_const", const="MINION", default="PALATINO",
help="Use Adobe Minion Pro as font. Note: You need to set TEXMFHOME first.")
parser.add_option("-v", "--verbose", help="Add extra debug messages", dest="VERBOSE",
action="store_true", default=False)
opts, yodafiles = parser.parse_args()
## Check that there are some arguments!
if not yodafiles:
print "Error: You need to specify some .yoda files to be plotted!"
sys.exit(1)
## Make output directory
if os.path.exists(opts.OUTPUTDIR) and not os.path.realpath(opts.OUTPUTDIR)==os.getcwd():
import shutil
shutil.rmtree(opts.OUTPUTDIR)
try:
os.makedirs(opts.OUTPUTDIR)
except:
print "Error: failed to make new directory '%s'" % opts.OUTPUTDIR
sys.exit(1)
## Get set of analyses involved in the runs
analyses = set()
blocked_analyses = set()
import yoda
for yodafile in yodafiles:
yodafilepath = os.path.abspath(yodafile.split(":")[0])
if not os.access(yodafilepath, os.R_OK):
print "Error: cannot read from %s" % yodafilepath
if opts.IGNORE_MISSING:
continue
else:
sys.exit(2)
analysisobjects = yoda.readYODA(yodafilepath)
for ao in analysisobjects:
path = ao.annotations()['Path']
if path.startswith('/REF/'):
path = path[5:]
analyses.add(path.strip('/').split('/')[0])
def anasort(name):
if name.startswith("MC"):
return "0"+name
else:
return name
analyses = sorted(analyses, key=anasort, reverse=True)
## Run rivet-cmphistos to get plain .dat files from .yoda
## We do this here since it also makes the necessary directories
ch_cmd = ["rivet-cmphistos"]
if opts.MC_ERRS:
ch_cmd.append("--mc-errs")
if not opts.SHOW_RATIO:
ch_cmd.append("--no-ratio")
if opts.REF_ID is not None:
ch_cmd.append("--refid=%s" % os.path.abspath(opts.REF_ID))
ch_cmd.append("--hier-out")
# TODO: Need to be able to override this: provide a --plotinfodir cmd line option?
-ch_cmd.append("--plotinfodir=../")
+ch_cmd.append("--plotinfodir=%s" % os.path.abspath("../"))
for af in yodafiles:
yodafilepath = os.path.abspath(af.split(":")[0])
if not os.access(yodafilepath, os.R_OK):
continue
newarg = yodafilepath
if ":" in af:
for opt in af.split(":")[1:]:
newarg += ":%s" % opt
# print newarg
ch_cmd.append(newarg)
for configfile in opts.CONFIGFILES:
configfile = os.path.abspath(os.path.expanduser(configfile))
if os.access(configfile, os.R_OK):
ch_cmd.append("-c")
ch_cmd.append(configfile)
# TODO: Pass rivet-mkhtml -m and -M args to rivet-cmphistos
if opts.VERBOSE:
# ch_cmd.append("--verbose")
print "Calling rivet-cmphistos with the following command:"
print " ".join(ch_cmd)
## Run rivet-cmphistos in a subdir, after fixing any relative paths in Rivet env vars
for var in ("RIVET_ANALYSIS_PATH", "RIVET_REF_PATH", "RIVET_INFO_PATH", "RIVET_PLOT_PATH"):
if var in os.environ:
abspaths = map(os.path.abspath, os.environ[var].split(":"))
os.environ[var] = ":".join(abspaths)
Popen(ch_cmd, cwd=opts.OUTPUTDIR, stderr=PIPE).wait()
## Write web page containing all (matched) plots
## Make web pages first so that we can load it locally in
## a browser to view the output before all plots are made
style = '''<style>
html { font-family: sans-serif; }
img { border: 0; }
a { text-decoration: none; font-weight: bold; }
</style>
'''
## Include MathJax configuration
script = '''\
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
tex2jax: {inlineMath: [["$","$"]]}
});
</script>
<script type="text/javascript"
src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>
'''
## A helper function for metadata LaTeX -> HTML conversion
from rivet.util import htmlify
## A timestamp HTML fragment to be used on each page:
import datetime
timestamp = '<p>Generated at %s</p>\n' % datetime.datetime.now().strftime("%A, %d. %B %Y %I:%M%p")
index = open(os.path.join(opts.OUTPUTDIR, "index.html"), "w")
index.write('<html>\n<head>\n<title>%s</title>\n%s</head>\n<body>' % (opts.TITLE, style + script))
if opts.BOOKLET and opts.VECTORFORMAT == "PDF":
index.write('<h2><a href="booklet.pdf">%s</a></h2>\n\n' % opts.TITLE)
else:
index.write('<h2>%s</h2>\n\n' % opts.TITLE)
if opts.SINGLE:
## Write table of contents
index.write('<ul>\n')
for analysis in analyses:
summary = analysis
ana = rivet.AnalysisLoader.getAnalysis(analysis)
if ana:
summary = "%s (%s)" % (ana.summary(), analysis)
if opts.IGNORE_UNVALIDATED and ana.status() != "VALIDATED":
continue
index.write('<li><a href="#%s">%s</a>\n' % (analysis, htmlify(summary)) )
index.write('</ul>\n')
for analysis in analyses:
references = []
summary = analysis
description = "NONE"
if analysis.find("_S") > 0:
spiresid = analysis[analysis.rfind('_S')+2:len(analysis)]
inspireid = "NONE"
elif analysis.find("_I") > 0:
inspireid = analysis[analysis.rfind('_I')+2:len(analysis)]
else:
inspireid = "NONE"
spiresid = "NONE"
ana = rivet.AnalysisLoader.getAnalysis(analysis)
if ana:
if ana.summary() and ana.summary() != "NONE":
summary = "%s (%s)" % (ana.summary(), analysis)
references = ana.references()
description = ana.description()
spiresid = ana.spiresId()
if opts.IGNORE_UNVALIDATED and ana.status().upper() != "VALIDATED":
continue
if opts.SINGLE:
index.write('\n<h3 style="clear:left; padding-top:2em;"><a name="%s">%s</a></h3>\n' % (analysis, htmlify(summary)) )
else:
index.write('\n<h3><a href="%s/index.html" style="text-decoration:none;">%s</a></h3>\n' % (analysis, htmlify(summary)))
reflist = []
if inspireid and inspireid !="NONE":
reflist.append('<a href="http://inspirehep.net/record/%s">Spires</a>' % inspireid)
elif spiresid and spiresid != "NONE":
reflist.append('<a href="http://durpdg.dur.ac.uk/cgi-bin/spiface/hep/www?irn+%s">Spires</a>' % spiresid)
reflist += references
index.write('<p>%s</p>\n' % " &#124; ".join(reflist))
index.write('<p style="font-size:smaller;">%s</p>\n' % htmlify(description))
anapath = os.path.join(opts.OUTPUTDIR, analysis)
if not opts.SINGLE:
# os.makedirs(anapath)
anaindex = open(os.path.join(anapath, "index.html"), 'w')
anaindex.write('<html>\n<head>\n<title>%s - %s</title>\n%s</head>\n<body>\n' %
(opts.OUTPUTDIR, analysis, style + script))
anaindex.write('<h3>%s</h3>\n' % analysis)
anaindex.write('<p><a href="../index.html">Back to index</a></p>\n')
anaindex.write('<p>\n %s\n</p>\n' % htmlify(description))
else:
anaindex = index
datfiles = glob.glob("%s/*.dat" % anapath)
anaindex.write('<div style="float:none; overflow:auto; width:100%">\n')
for datfile in sorted(datfiles):
obsname = os.path.basename(datfile).replace(".dat", "")
pngfile = obsname+".png"
vecfile = obsname+"."+opts.VECTORFORMAT.lower()
srcfile = obsname+".dat"
if opts.SINGLE:
pngfile = os.path.join(analysis, pngfile)
vecfile = os.path.join(analysis, vecfile)
srcfile = os.path.join(analysis, srcfile)
anaindex.write(' <div style="float:left; font-size:smaller; font-weight:bold;">\n')
anaindex.write(' <a href="#%s-%s">&#9875;</a><a href="%s">&#8984</a> %s:<br>\n' % (analysis, obsname, srcfile, vecfile) )
anaindex.write(' <a name="%s-%s"><a href="%s">\n' % (analysis, obsname, vecfile) )
anaindex.write(' <img src="%s">\n' % pngfile )
anaindex.write(' </a></a>\n')
anaindex.write(' </div>\n')
anaindex.write('</div>\n')
if not opts.SINGLE:
anaindex.write('<div style="float:none">%s</body>\n</html></div>\n' % timestamp)
anaindex.close()
index.write('<br>%s</body>\n</html>' % timestamp)
index.close()
## Run make-plots on all generated .dat files
# sys.exit(0)
mp_cmd = ["make-plots"]
if opts.NUMTHREADS:
mp_cmd.append("--num-threads=%d" % opts.NUMTHREADS)
if opts.VECTORFORMAT == "PDF":
mp_cmd.append("--pdfpng")
elif opts.VECTORFORMAT == "PS":
mp_cmd.append("--pspng")
if opts.OUTPUT_FONT == "CM":
mp_cmd.append("--cm")
elif opts.OUTPUT_FONT == "TIMES":
mp_cmd.append("--times")
elif opts.OUTPUT_FONT == "minion":
mp_cmd.append("--minion")
datfiles = []
for analysis in analyses:
anapath = os.path.join(opts.OUTPUTDIR, analysis)
#print anapath
anadatfiles = glob.glob("%s/*.dat" % anapath)
datfiles += sorted(anadatfiles)
if datfiles:
mp_cmd += datfiles
if opts.VERBOSE:
mp_cmd.append("--verbose")
print "Calling make-plots with the following options:"
print " ".join(mp_cmd)
Popen(mp_cmd).wait()
if opts.BOOKLET and opts.VECTORFORMAT=="PDF":
bookletcmd = ["pdftk"]
for analysis in analyses:
anapath = os.path.join(opts.OUTPUTDIR, analysis)
bookletcmd += sorted(glob.glob("%s/*.pdf" % anapath))
bookletcmd += ["cat", "output", "%s/booklet.pdf" % opts.OUTPUTDIR]
print bookletcmd
Popen(bookletcmd).wait()

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