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diff --git a/doc/release.notes b/doc/release.notes
index d5bcdd2..cfdce31 100644
--- a/doc/release.notes
+++ b/doc/release.notes
@@ -1,239 +1,243 @@
///////////////////////////////////////////////////////////////
/// ///
/// This is the History file for the Laura++ package. ///
/// ///
///////////////////////////////////////////////////////////////
+10th April 2014 Mark Whitehead
+* Fix an issue with the likelihood penalty term for Gaussian constraints
+ - Factor two missing in the denominator
+ - New penalty term is: ( x-mean )^2 / 2*(width^2)
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Laura++ v2r1
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
1st April 2014 Thomas Latham
* Fix issue in LauFitter that prevents compilation with g++ 4.8
- Missing virtual destructor
- Take opportunity to audit other special functions
31st March 2014 Mark Whitehead
(in branch for release in v2r1)
* Added an efficiency branch to the ntuple produced for toy data samples
- Both LauSimpleFitModel and LauCPFitModel updated
28th March 2014 Daniel Craik
* Added support for asymmetric errors to Lau2DHistDP, Lau2DSplineDP and LauEffModel.
27th March 2014 Daniel Craik
* Changed histogram classes to use seeded random number generator for
fluctuation and raising or lowering of bins and updated doxygen.
20th March 2014 Mark Whitehead
(in branch for release in v2r1)
* Added the ability to add Gaussian contraints to LauFormulaPars of fit parameters
- User supplies the information but the LauFormulaPar is constructed behind the scenes
11th March 2014 Mark Whitehead
(in branch for release in v2r1)
* Added the functionality to make LauFormulaPars usable in fits
- Added a new class LauAbsRValue which LauParameter and LauFormularPar inherit from
- Many files updated to accept LauAbsRValues instead of LauParameters
* Fairly major clean up of obsolete functions in LauAbsPdf
- Only LauLinearPdf used any of them, this has now been updated
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Laura++ v2r0
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
8th March 2014 Thomas Latham
* Some additional functionality for the CoeffSet classes:
- allow the parameter values to be set (optionally setting the initial and generated values as well)
- allow the parameters to be set to float or to be fixed in the fit
These are needed when cloning but wanting some of the parameters to have different values and/or floating behaviour from the cloned set.
* Improve the printout of the setting of the coefficient values in the fit models and the creation of resonances
* Add LauFlatNR for the unform NR model - ends its rather strange special treatment
* Fix bug setting resAmpInt to 0 for LauPolNR
* Many other improvements to the info/warning/error printouts
* Modify GenFitBelleCPKpipi example to demonstrate cloning in action
* Add -Werror to compiler flags (treats warnings as errors)
5th March 2014 Thomas Latham
* Some improvements to LauPolNR to speed up amplitude calculation
2nd March 2014 Thomas Latham
* A number of updates to the CoeffSet classes:
- allow specification of the basename just after construction (before being given to the fit model)
- allow configuration of the parameter fit ranges (through static methods of base class)
- more adaptable cloning of the parameters (e.g. can only clone phase but allow magnitude to float independently)
- allow CP-violating parameters to be second-stage in Belle and CLEO formats
* Some improvements to the Doxygen and runtime information printouts
20th February 2014 Louis Henry
* Add LauPolNR - class for modelling the nonresonant contribution based on BaBar 3K model (arXiv:1201.5897)
6th February 2014 Thomas Latham
* Correct helicity convention information in Doxygen for LauKinematics
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Laura++ v1r2
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
5th February 2014 Thomas Latham
* Add rule to the Makefile that creates a rootmap file for the library
4th February 2014 Daniel Craik
* Fixed bug in Lau2DSplineDPPdf - normalisation was not being calculated
* Added out-of-range warning in LauBkgndDPModel and supressed excessive warnings
3rd February 2014 Mark Whitehead
(in branch for release in v2r0)
* Added a new class to allow parameters to be a function of other parameters
- inc/LauFormulaPar.hh
- src/LauFormulaPar.cc
28th January 2014 Daniel Craik
* Improved out-of-range efficiency warnings in LauEffModel and supressed excessive errors
* Modified LauIsobarDynamics to allow LASS parameters to be configured for LauLASSBWRes and
LauLASSNRRes
27th January 2014 Daniel Craik
* Added spline interpolation to DP backgrounds
- Added Lau2DSplineDPPdf which uses a spline to model a normalised PDF across a DP
- Added pABC, Lau2DAbsDPPdf, for Lau2DHistDPPdf and Lau2DSplineDPPdf and moved common
code in Lau2DHistDPPdf and Lau2DSplineDPPdf into ABC Lau2DAbsHistDPPdf
- LauBkgndDPModel, modified to use Lau2DAbsDPPdf instead of Lau2DHistDPPdf
- setBkgndSpline method added to LauBkgndDPModel to allow use of splines
22nd January 2014 Thomas Latham
* Improve some error checks and corresponding warning messages in
LauCPFitModel::setSignalDPParameters
16th January 2014 Thomas Latham
* Add LauRealImagCPCoeffSet, which provides an (x,y), (xbar,ybar) way of
parametrising the complex coefficients.
* Try to improve timing in the *CoeffSet classes by making the complex coeffs
into member variables.
20th December 2013 Daniel Craik
* Added Lau2DCubicSpline which provides cubic spline interpolation of a histogram
- Added Lau2DSplineDP which uses a spline to model variation across a DP (eg efficiency)
- Added pABC, Lau2DAbsDP, for Lau2DHistDP and Lau2DSplineDP and moved common code
in Lau2DHistDP and Lau2DSplineDP into ABC Lau2DAbsHistDP
- LauEffModel, LauDPDepSumPdf and LauDPDepMapPdf modified to use Lau2DAbsDP instead of
Lau2DHistDP
- setEffSpline method added to LauEffModel and useSpline flag added to constructor for
LauDPDepSumPdf to allow use of splines
18th December 2013 Mark Whitehead
(in branch for release in v2r0)
* Added functionality to include Gaussian constraints on floated
parameters in the fit.
The files updated are:
- inc/LauAbsFitModel.hh
- inc/LauParameter.hh
- src/LauAbsFitModel.cc
- src/LauParameter.cc
5th December 2013 Thomas Latham
* Fix small bug in GenFitKpipi example where background asymmetry parameter had
its limits the wrong way around
4th December 2013 Daniel Craik
* Updated 2D chi-squared code to use adaptive binning.
3rd December 2013 Thomas Latham
* Generalise the Makefile in the examples directory
- results in minor changes to the names of 3 of the binaries
3rd December 2013 Thomas Latham
(in branch for release in v2r0)
* Have the master save an ntuple with all fitter parameters and the full correlation matrix information.
29th November 2013 Thomas Latham
* Fixed bug in ResultsExtractor where the output file was not written
29th November 2013 Thomas Latham
(in branch for release in v2r0)
* Allow the slave ntuples to store the partial covariance matrices in the simultaneous fitting
26th November 2013 Thomas Latham
(in branch for release in v2r0)
* Added first version of the simultaneous fitting framework
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Laura++ v1r1p1
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
22nd November 2013 Thomas Latham
* Fixed bug in LauCPFitModel where values of q = -1 extra PDFs
were used regardless of the event charge.
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Laura++ v1r1
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
20th November 2013 Mark Whitehead
* Changed convention for the barrier factors, swapping from p* to p.
This seems to give more physically reasonable results.
The files updated are:
- src/LauGounarisSakuraiRes.cc
- src/LauRelBreitWignerRes.cc
18th October 2013 Thomas Latham
* Fix dependency problem in Makefile
8th October 2013 Thomas Latham
* Some fixes to yield implementation
* Minor bug fix in DP background histogram class
7th October 2013 Mark Whitehead
* Update to accept the yields and yield asymmetries as LauParameters.
All examples have been updated to reflect this change.
This updated the following files:
- inc/LauCPFitModel.hh
- inc/LauSimpleFitModel.hh
- inc/LauAbsFitModel.hh
- src/LauCPFitModel.cc
- src/LauSimpleFitModel.cc
* Addition of the following particles to src/LauResonanceMaker.cc
Ds*+-, Ds0*(2317)+-, Ds2*(2573)+-, Ds1*(2700)+- and Bs*0
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Laura++ v1r0
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
13th September 2013 Thomas Latham
* Initial import of the package into HEPforge
diff --git a/src/LauAbsFitModel.cc b/src/LauAbsFitModel.cc
index 45c77d2..e03d6d3 100644
--- a/src/LauAbsFitModel.cc
+++ b/src/LauAbsFitModel.cc
@@ -1,1232 +1,1232 @@
// Copyright University of Warwick 2004 - 2014.
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
// Authors:
// Thomas Latham
// John Back
// Paul Harrison
/*! \file LauAbsFitModel.cc
\brief File containing implementation of LauAbsFitModel class.
*/
#include <iostream>
#include <limits>
#include <vector>
#include "TMessage.h"
#include "TMonitor.h"
#include "TServerSocket.h"
#include "TSocket.h"
#include "TSystem.h"
#include "TVectorD.h"
#include "TVirtualFitter.h"
#include "LauAbsFitModel.hh"
#include "LauAbsFitter.hh"
#include "LauAbsPdf.hh"
#include "LauComplex.hh"
#include "LauFitter.hh"
#include "LauFitDataTree.hh"
#include "LauFitNtuple.hh"
#include "LauGenNtuple.hh"
#include "LauParameter.hh"
#include "LauParamFixed.hh"
#include "LauPrint.hh"
#include "LauSPlot.hh"
ClassImp(LauAbsFitModel)
LauAbsFitModel::LauAbsFitModel() :
storeCon_(0),
twoStageFit_(kFALSE),
useAsymmFitErrors_(kFALSE),
compareFitData_(kFALSE),
writeLatexTable_(kFALSE),
writeSPlotData_(kFALSE),
storeDPEff_(kFALSE),
randomFit_(kFALSE),
emlFit_(kFALSE),
poissonSmear_(kFALSE),
enableEmbedding_(kFALSE),
usingDP_(kTRUE),
pdfsDependOnDP_(kFALSE),
firstExpt_(0),
nExpt_(0),
evtsPerExpt_(0),
iExpt_(0),
inputFitData_(0),
fitNtuple_(0),
genNtuple_(0),
sPlotNtuple_(0),
fitStatus_(0),
NLL_(0),
numberOKFits_(0),
numberBadFits_(0),
nParams_(0),
nFreeParams_(0),
worstLogLike_(std::numeric_limits<Double_t>::max()),
withinAsymErrorCalc_(kFALSE),
nullString_(""),
doSFit_(kFALSE),
sWeightBranchName_(""),
sWeightScaleFactor_(1.0),
fitToyMCFileName_("fitToyMC.root"),
fitToyMCTableName_("fitToyMCTable"),
fitToyMCScale_(10),
fitToyMCPoissonSmear_(kFALSE),
sPlotFileName_(""),
sPlotTreeName_(""),
sPlotVerbosity_(""),
sMaster_(0),
messageFromMaster_(0),
slaveId_(-1),
nSlaves_(0),
parValues_(0)
{
}
LauAbsFitModel::~LauAbsFitModel()
{
delete inputFitData_; inputFitData_ = 0;
delete fitNtuple_; fitNtuple_ = 0;
delete genNtuple_; genNtuple_ = 0;
delete sPlotNtuple_; sPlotNtuple_ = 0;
delete sMaster_; sMaster_ = 0;
delete[] parValues_; parValues_ = 0;
// Remove the components created to apply constraints to fit parameters
for (std::vector<LauAbsRValue*>::iterator iter = conVars_.begin(); iter != conVars_.end(); ++iter){
if ( !(*iter)->isLValue() ){
delete (*iter);
(*iter) = 0;
}
}
}
void LauAbsFitModel::run(const TString& applicationCode, const TString& dataFileName, const TString& dataTreeName,
const TString& histFileName, const TString& tableFileName)
{
// Chose whether you want to generate or fit events in the Dalitz plot.
// To generate events choose applicationCode = "gen", to fit events choose
// applicationCode = "fit".
TString runCode(applicationCode);
runCode.ToLower();
TString histFileNameCopy(histFileName);
TString tableFileNameCopy(tableFileName);
TString dataFileNameCopy(dataFileName);
TString dataTreeNameCopy(dataTreeName);
// Initialise the fit par vectors. Each class that inherits from this one
// must implement this sensibly for all vectors specified in clearFitParVectors,
// i.e. specify parameter names, initial, min, max and fixed values
this->initialise();
// Add variables to Gaussian constrain to a list
this->addConParameters();
// Add formula Gaussian constraints to the list
if (dataFileNameCopy == "") {dataFileNameCopy = "data.root";}
if (dataTreeNameCopy == "") {dataTreeNameCopy = "genResults";}
if (runCode.Contains("gen")) {
if (histFileNameCopy == "") {histFileNameCopy = "parInfo.root";}
if (tableFileNameCopy == "") {tableFileNameCopy = "genResults";}
this->setGenValues();
this->generate(dataFileNameCopy, dataTreeNameCopy, histFileNameCopy, tableFileNameCopy);
} else if (runCode.Contains("fit")) {
if (histFileNameCopy == "") {histFileNameCopy = "parInfo.root";}
if (tableFileNameCopy == "") {tableFileNameCopy = "fitResults";}
this->fit(dataFileNameCopy, dataTreeNameCopy, histFileNameCopy, tableFileNameCopy);
} else if (runCode.Contains("reweight")) {
this->weightEvents(dataFileNameCopy, dataTreeNameCopy);
}
}
void LauAbsFitModel::runSlave(const TString& dataFileName, const TString& dataTreeName,
const TString& histFileName, const TString& tableFileName,
const TString& addressMaster, const UInt_t portMaster)
{
if ( sMaster_ != 0 ) {
std::cerr << "ERROR in LauAbsFitModel::runSlave : master socket already present" << std::endl;
return;
}
// Open connection to master
sMaster_ = new TSocket(addressMaster, portMaster);
sMaster_->Recv( messageFromMaster_ );
messageFromMaster_->ReadUInt( slaveId_ );
messageFromMaster_->ReadUInt( nSlaves_ );
delete messageFromMaster_;
messageFromMaster_ = 0;
std::cout << "INFO in LauAbsFitModel::runSlave : Established connection to master on port " << portMaster << std::endl;
std::cout << " : We are slave " << slaveId_ << " of " << nSlaves_ << std::endl;
// Initialise the fit par vectors. Each class that inherits from this one
// must implement this sensibly for all vectors specified in clearFitParVectors,
// i.e. specify parameter names, initial, min, max and fixed values
this->initialise();
nParams_ = fitVars_.size();
parValues_ = new Double_t[nParams_];
for ( UInt_t iPar(0); iPar < nParams_; ++iPar ) {
parValues_[iPar] = fitVars_[iPar]->initValue();
}
TString dataFileNameCopy(dataFileName);
TString dataTreeNameCopy(dataTreeName);
TString histFileNameCopy(histFileName);
TString tableFileNameCopy(tableFileName);
if (dataFileNameCopy == "") {dataFileNameCopy = "data.root";}
if (dataTreeNameCopy == "") {dataTreeNameCopy = "genResults";}
if (histFileNameCopy == "") {histFileNameCopy = "parInfo.root";}
if (tableFileNameCopy == "") {tableFileNameCopy = "fitResults";}
this->fitSlave(dataFileNameCopy, dataTreeNameCopy, histFileNameCopy, tableFileNameCopy);
std::cout << "INFO in LauAbsFitModel::runSlave : Fit slave " << slaveId_ << " has finished successfully" << std::endl;
}
void LauAbsFitModel::doSFit( const TString& sWeightBranchName, Double_t scaleFactor )
{
if ( sWeightBranchName == "" ) {
std::cerr << "WARNING in LauAbsFitModel::doSFit : sWeight branch name is empty string, not setting-up sFit." << std::endl;
return;
}
doSFit_ = kTRUE;
sWeightBranchName_ = sWeightBranchName;
sWeightScaleFactor_ = scaleFactor;
}
void LauAbsFitModel::setBkgndClassNames( const std::vector<TString>& names )
{
if ( !bkgndClassNames_.empty() ) {
std::cerr << "WARNING in LauAbsFitModel::setBkgndClassNames : Names already stored, not changing them." << std::endl;
return;
}
UInt_t nBkgnds = names.size();
for ( UInt_t i(0); i < nBkgnds; ++i ) {
bkgndClassNames_.insert( std::make_pair( i, names[i] ) );
}
this->setupBkgndVectors();
}
Bool_t LauAbsFitModel::validBkgndClass( const TString& className ) const
{
if ( bkgndClassNames_.empty() ) {
return kFALSE;
}
Bool_t found(kFALSE);
for ( LauBkgndClassMap::const_iterator iter = bkgndClassNames_.begin(); iter != bkgndClassNames_.end(); ++iter ) {
if ( iter->second == className ) {
found = kTRUE;
break;
}
}
return found;
}
UInt_t LauAbsFitModel::bkgndClassID( const TString& className ) const
{
if ( ! this->validBkgndClass( className ) ) {
std::cerr << "ERROR in LauAbsFitModel::bkgndClassID : Request for ID for invalid background class \"" << className << "\"." << std::endl;
return (bkgndClassNames_.size() + 1);
}
UInt_t bgID(0);
for ( LauBkgndClassMap::const_iterator iter = bkgndClassNames_.begin(); iter != bkgndClassNames_.end(); ++iter ) {
if ( iter->second == className ) {
bgID = iter->first;
break;
}
}
return bgID;
}
const TString& LauAbsFitModel::bkgndClassName( UInt_t classID ) const
{
LauBkgndClassMap::const_iterator iter = bkgndClassNames_.find( classID );
if ( iter == bkgndClassNames_.end() ) {
std::cerr << "ERROR in LauAbsFitModel::bkgndClassName : Request for name of invalid background class ID " << classID << "." << std::endl;
return nullString_;
}
return iter->second;
}
void LauAbsFitModel::clearFitParVectors()
{
std::cout << "INFO in LauAbsFitModel::clearFitParVectors : Clearing fit variable vectors" << std::endl;
// Remove the components created to apply constraints to fit parameters
for (std::vector<LauAbsRValue*>::iterator iter = conVars_.begin(); iter != conVars_.end(); ++iter){
if ( !(*iter)->isLValue() ){
delete (*iter);
(*iter) = 0;
}
}
conVars_.clear();
fitVars_.clear();
}
void LauAbsFitModel::clearExtraVarVectors()
{
std::cout << "INFO in LauAbsFitModel::clearExtraVarVectors : Clearing extra ntuple variable vectors" << std::endl;
extraVars_.clear();
}
void LauAbsFitModel::setGenValues()
{
// makes sure each parameter holds its genValue as its current value
for (LauParameterPList::iterator iter = fitVars_.begin(); iter != fitVars_.end(); ++iter) {
(*iter)->value((*iter)->genValue());
}
this->propagateParUpdates();
}
void LauAbsFitModel::writeSPlotData(const TString& fileName, const TString& treeName, Bool_t storeDPEfficiency, const TString& verbosity)
{
if (this->writeSPlotData()) {
std::cerr << "ERROR in LauAbsFitModel::writeSPlotData : Already have an sPlot ntuple setup, not doing it again." << std::endl;
return;
}
writeSPlotData_ = kTRUE;
sPlotFileName_ = fileName;
sPlotTreeName_ = treeName;
sPlotVerbosity_ = verbosity;
storeDPEff_ = storeDPEfficiency;
}
// TODO : histFileName isn't used here at the moment but could be used for
// storing the values of the parameters used in the generation.
// These could then be read and used for setting the "true" values
// in a subsequent fit.
void LauAbsFitModel::generate(const TString& dataFileName, const TString& dataTreeName, const TString& /*histFileName*/, const TString& tableFileNameBase)
{
// Create the ntuple for storing the results
std::cout << "INFO in LauAbsFitModel::generate : Creating generation ntuple." << std::endl;
if (genNtuple_ != 0) {delete genNtuple_; genNtuple_ = 0;}
genNtuple_ = new LauGenNtuple(dataFileName,dataTreeName);
// add branches for storing the experiment number and the number of
// the event within the current experiment
this->addGenNtupleIntegerBranch("iExpt");
this->addGenNtupleIntegerBranch("iEvtWithinExpt");
this->setupGenNtupleBranches();
// Start the cumulative timer
cumulTimer_.Start();
Bool_t genOK(kTRUE);
do {
// Loop over the number of experiments
for (iExpt_ = firstExpt_; iExpt_ < (firstExpt_+nExpt_); ++iExpt_) {
// Start the timer to see how long each experiment takes to generate
timer_.Start();
// Store the experiment number in the ntuple
this->setGenNtupleIntegerBranchValue("iExpt",iExpt_);
// Do the generation for this experiment
std::cout << "INFO in LauAbsFitModel::generate : Generating experiment number " << iExpt_ << std::endl;
genOK = this->genExpt();
// Stop the timer and see how long the program took so far
timer_.Stop();
timer_.Print();
if (!genOK) {
// delete and recreate an empty tree
genNtuple_->deleteAndRecreateTree();
// then break out of the experiment loop
std::cerr << "ERROR in LauAbsFitModel::generate : Problem in toy MC generation. Starting again with updated parameters..." << std::endl;
break;
}
if (this->writeLatexTable()) {
TString tableFileName(tableFileNameBase);
tableFileName += "_";
tableFileName += iExpt_;
tableFileName += ".tex";
this->writeOutTable(tableFileName);
}
} // Loop over number of experiments
} while (!genOK);
// Print out total timing info.
cumulTimer_.Stop();
std::cout << "INFO in LauAbsFitModel::generate : Finished generating all experiments." << std::endl;
std::cout << "INFO in LauAbsFitModel::generate : Cumulative timing:" << std::endl;
cumulTimer_.Print();
// Build the event index
std::cout << "INFO in LauAbsFitModel::generate : Building experiment:event index." << std::endl;
// TODO - can test this return value?
//Int_t nIndexEntries =
genNtuple_->buildIndex("iExpt","iEvtWithinExpt");
// Write out toy MC ntuple
std::cout << "INFO in LauAbsFitModel::generate : Writing data to file " << dataFileName << "." << std::endl;
genNtuple_->writeOutGenResults();
}
void LauAbsFitModel::addGenNtupleIntegerBranch(const TString& name)
{
genNtuple_->addIntegerBranch(name);
}
void LauAbsFitModel::addGenNtupleDoubleBranch(const TString& name)
{
genNtuple_->addDoubleBranch(name);
}
void LauAbsFitModel::setGenNtupleIntegerBranchValue(const TString& name, Int_t value)
{
genNtuple_->setIntegerBranchValue(name,value);
}
void LauAbsFitModel::setGenNtupleDoubleBranchValue(const TString& name, Double_t value)
{
genNtuple_->setDoubleBranchValue(name,value);
}
Int_t LauAbsFitModel::getGenNtupleIntegerBranchValue(const TString& name) const
{
return genNtuple_->getIntegerBranchValue(name);
}
Double_t LauAbsFitModel::getGenNtupleDoubleBranchValue(const TString& name) const
{
return genNtuple_->getDoubleBranchValue(name);
}
void LauAbsFitModel::fillGenNtupleBranches()
{
genNtuple_->fillBranches();
}
void LauAbsFitModel::addSPlotNtupleIntegerBranch(const TString& name)
{
sPlotNtuple_->addIntegerBranch(name);
}
void LauAbsFitModel::addSPlotNtupleDoubleBranch(const TString& name)
{
sPlotNtuple_->addDoubleBranch(name);
}
void LauAbsFitModel::setSPlotNtupleIntegerBranchValue(const TString& name, Int_t value)
{
sPlotNtuple_->setIntegerBranchValue(name,value);
}
void LauAbsFitModel::setSPlotNtupleDoubleBranchValue(const TString& name, Double_t value)
{
sPlotNtuple_->setDoubleBranchValue(name,value);
}
void LauAbsFitModel::fillSPlotNtupleBranches()
{
sPlotNtuple_->fillBranches();
}
void LauAbsFitModel::fit(const TString& dataFileName, const TString& dataTreeName, const TString& histFileName, const TString& tableFileNameBase)
{
// Routine to perform the total fit.
std::cout << "INFO in LauAbsFitModel::fit : First experiment = " << firstExpt_ << std::endl;
std::cout << "INFO in LauAbsFitModel::fit : Number of experiments = " << nExpt_ << std::endl;
// Start the cumulative timer
cumulTimer_.Start();
numberOKFits_ = 0, numberBadFits_ = 0;
fitStatus_ = -1;
// Create and setup the fit results ntuple
std::cout << "INFO in LauAbsFitModel::fit : Creating fit ntuple." << std::endl;
if (fitNtuple_ != 0) {delete fitNtuple_; fitNtuple_ = 0;}
fitNtuple_ = new LauFitNtuple(histFileName, this->useAsymmFitErrors());
// Create and setup the sPlot ntuple
if (this->writeSPlotData()) {
std::cout << "INFO in LauAbsFitModel::fit : Creating sPlot ntuple." << std::endl;
if (sPlotNtuple_ != 0) {delete sPlotNtuple_; sPlotNtuple_ = 0;}
sPlotNtuple_ = new LauGenNtuple(sPlotFileName_,sPlotTreeName_);
this->setupSPlotNtupleBranches();
}
// This reads in the given dataFile and creates an input
// fit data tree that stores them for all events and experiments.
Bool_t dataOK = this->cacheFitData(dataFileName,dataTreeName);
if (!dataOK) {
std::cerr << "ERROR in LauAbsFitModel::fit : Problem caching the fit data." << std::endl;
gSystem->Exit(EXIT_FAILURE);
}
// Loop over the number of experiments
for (iExpt_ = firstExpt_; iExpt_ < (firstExpt_+nExpt_); ++iExpt_) {
// Start the timer to see how long each fit takes
timer_.Start();
inputFitData_->readExperimentData(iExpt_);
this->eventsPerExpt(inputFitData_->nEvents());
if (this->eventsPerExpt() < 1) {
std::cerr << "ERROR in LauAbsFitModel::fit : Zero events in experiment " << iExpt_ << ", skipping..." << std::endl;
timer_.Stop();
continue;
}
// Now the sub-classes must implement whatever they need to do
// to cache any more input fit data they need in order to
// calculate the likelihoods during the fit.
// They need to use the inputFitData_ tree as input. For example,
// inputFitData_ contains m13Sq and m23Sq. The appropriate fit model
// then caches the resonance dynamics for the signal model, as
// well as the background likelihood values in the Dalitz plot
this->cacheInputFitVars();
if ( this->doSFit() ) {
this->cacheInputSWeights();
}
// Do the fit for this experiment
this->fitExpt();
// Write the results into the ntuple
this->finaliseFitResults(tableFileNameBase);
// Stop the timer and see how long the program took so far
timer_.Stop();
timer_.Print();
// Store the per-event likelihood values
if ( this->writeSPlotData() ) {
this->storePerEvtLlhds();
}
// Create a toy MC sample using the fitted parameters so that
// the user can compare the fit to the data.
if (compareFitData_ == kTRUE && fitStatus_ == 3) {
this->createFitToyMC(fitToyMCFileName_, fitToyMCTableName_);
}
// Keep track of how many fits worked or failed
// NB values of fitStatus_ now indicate the status of the error matrix:
// 0= not calculated at all
// 1= approximation only, not accurate
// 2= full matrix, but forced positive-definite
// 3= full accurate covariance matrix
if (fitStatus_ == 3) {
numberOKFits_++;
} else {
numberBadFits_++;
}
} // Loop over number of experiments
// Print out total timing info.
cumulTimer_.Stop();
std::cout << "INFO in LauAbsFitModel::fit : Cumulative timing:" << std::endl;
cumulTimer_.Print();
// Print out stats on OK fits.
std::cout << "INFO in LauAbsFitModel::fit : Number of OK Fits = " << numberOKFits_ << std::endl;
std::cout << "INFO in LauAbsFitModel::fit : Number of Failed Fits = " << numberBadFits_ << std::endl;
Double_t fitEff(0.0);
if (nExpt_ != 0) {fitEff = numberOKFits_/(1.0*nExpt_);}
std::cout << "INFO in LauAbsFitModel::fit : Fit efficiency = " << fitEff*100.0 << "%." << std::endl;
// Write out any fit results (ntuples etc...).
this->writeOutAllFitResults();
if ( this->writeSPlotData() ) {
this->calculateSPlotData();
}
}
void LauAbsFitModel::fitSlave(const TString& dataFileName, const TString& dataTreeName, const TString& histFileName, const TString& tableFileNameBase)
{
// Create and setup the fit results ntuple
std::cout << "INFO in LauAbsFitModel::fitSlave : Creating fit ntuple." << std::endl;
if (fitNtuple_ != 0) {delete fitNtuple_; fitNtuple_ = 0;}
fitNtuple_ = new LauFitNtuple(histFileName, this->useAsymmFitErrors());
// This reads in the given dataFile and creates an input
// fit data tree that stores them for all events and experiments.
Bool_t dataOK = this->cacheFitData(dataFileName,dataTreeName);
if (!dataOK) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Problem caching the fit data." << std::endl;
gSystem->Exit(EXIT_FAILURE);
}
// Now process the various requests from the master
TMessage messageToMaster(kMESS_ANY);
while ( kTRUE ) {
sMaster_->Recv( messageFromMaster_ );
if ( messageFromMaster_->What() == kMESS_STRING ) {
TString msgStr;
messageFromMaster_->ReadTString( msgStr );
std::cout << "INFO in LauAbsFitModel::fitSlave : Received message from master: " << msgStr << std::endl;
if ( msgStr == "Send Parameters" ) {
// Update initial fit parameters if required (e.g. if using random numbers).
this->checkInitFitParams();
// Send the fit parameters
TObjArray array;
for ( LauParameterPList::iterator iter = fitVars_.begin(); iter != fitVars_.end(); ++iter ) {
array.Add( *iter );
}
messageToMaster.Reset( kMESS_OBJECT );
messageToMaster.WriteObject( &array );
sMaster_->Send( messageToMaster );
} else if ( msgStr == "Read Expt" ) {
// Read the data for this experiment
messageFromMaster_->ReadUInt( iExpt_ );
inputFitData_->readExperimentData( iExpt_ );
UInt_t nEvent = inputFitData_->nEvents();
this->eventsPerExpt( nEvent );
if ( nEvent < 1 ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Zero events in experiment " << firstExpt_ << ", the master should skip this experiment..." << std::endl;
}
messageToMaster.Reset( kMESS_ANY );
messageToMaster.WriteUInt( slaveId_ );
messageToMaster.WriteUInt( nEvent );
sMaster_->Send( messageToMaster );
} else if ( msgStr == "Cache" ) {
// Perform the caching
this->cacheInputFitVars();
messageToMaster.Reset( kMESS_ANY );
messageToMaster.WriteUInt( slaveId_ );
messageToMaster.WriteBool( kTRUE );
sMaster_->Send( messageToMaster );
} else if ( msgStr == "Write Results" ) {
this->writeOutAllFitResults();
messageToMaster.Reset( kMESS_ANY );
messageToMaster.WriteUInt( slaveId_ );
messageToMaster.WriteBool( kTRUE );
sMaster_->Send( messageToMaster );
} else if ( msgStr == "Finish" ) {
std::cout << "INFO in LauAbsFitModel::fitSlave : Message from master to finish" << std::endl;
break;
} else {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Unexpected message from master" << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
} else if ( messageFromMaster_->What() == kMESS_OBJECT ) {
std::cout << "INFO in LauAbsFitModel::fitSlave : Received message from master: Finalise" << std::endl;
messageFromMaster_->ReadInt( fitStatus_ );
messageFromMaster_->ReadDouble( NLL_ );
TObjArray * objarray = dynamic_cast<TObjArray*>( messageFromMaster_->ReadObject( messageFromMaster_->GetClass() ) );
if ( ! objarray ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Error reading parameters from master" << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
TMatrixD * covMat = dynamic_cast<TMatrixD*>( messageFromMaster_->ReadObject( messageFromMaster_->GetClass() ) );
if ( ! covMat ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Error reading covariance matrix from master" << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
covMatrix_.Clear();
covMatrix_.ResizeTo( covMat->GetNrows(), covMat->GetNcols() );
covMatrix_.SetMatrixArray( covMat->GetMatrixArray() );
delete covMat; covMat = 0;
UInt_t nPars = objarray->GetEntries();
if ( nPars != nParams_ ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Unexpected number of parameters received from master" << std::endl;
std::cerr << " ::fitSlave : Received " << nPars << " when expecting " << nParams_ << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
for ( UInt_t iPar(0); iPar < nPars; ++iPar ) {
LauParameter* parameter = dynamic_cast<LauParameter*>( (*objarray)[iPar] );
if ( ! parameter ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Error reading parameter from master" << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
if ( parameter->name() != fitVars_[iPar]->name() ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Error reading parameter from master" << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
*(fitVars_[iPar]) = *parameter;
}
this->finaliseFitResults( tableFileNameBase );
// Send the finalised parameters
TObjArray array;
for ( LauParameterPList::iterator iter = fitVars_.begin(); iter != fitVars_.end(); ++iter ) {
array.Add( *iter );
}
messageToMaster.Reset( kMESS_ANY );
messageToMaster.WriteUInt( slaveId_ );
messageToMaster.WriteBool( kTRUE );
messageToMaster.WriteObject( &array );
sMaster_->Send( messageToMaster );
} else if ( messageFromMaster_->What() == kMESS_ANY ) {
UInt_t nPars(0);
messageFromMaster_->ReadUInt( nPars );
if ( nPars != nParams_ ) {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Unexpected number of parameters received from master" << std::endl;
std::cerr << " ::fitSlave : Received " << nPars << " when expecting " << nParams_ << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
messageFromMaster_->ReadFastArray( parValues_, nPars );
for ( UInt_t iPar(0); iPar < nPars; ++iPar ) {
if ( ! fitVars_[iPar]->fixed() ) {
fitVars_[iPar]->value( parValues_[iPar] );
}
}
this->propagateParUpdates();
Double_t negLogLike = this->getTotNegLogLikelihood();
messageToMaster.Reset( kMESS_ANY );
messageToMaster.WriteDouble( negLogLike );
sMaster_->Send( messageToMaster );
} else {
std::cerr << "ERROR in LauAbsFitModel::fitSlave : Unexpected message type" << std::endl;
gSystem->Exit( EXIT_FAILURE );
}
delete messageFromMaster_;
messageFromMaster_ = 0;
}
}
Bool_t LauAbsFitModel::cacheFitData(const TString& dataFileName, const TString& dataTreeName)
{
// From the input data stream, store the variables into the
// internal tree inputFitData_ that can be used by the sub-classes
// in calculating their likelihood functions for the fit
delete inputFitData_;
inputFitData_ = new LauFitDataTree(dataFileName,dataTreeName);
Bool_t dataOK = inputFitData_->findBranches();
if (!dataOK) {
delete inputFitData_; inputFitData_ = 0;
}
return dataOK;
}
void LauAbsFitModel::cacheInputSWeights()
{
Bool_t hasBranch = inputFitData_->haveBranch( sWeightBranchName_ );
if ( ! hasBranch ) {
std::cerr << "ERROR in LauAbsFitModel::cacheInputSWeights : Input data does not contain variable \"" << sWeightBranchName_ << "\".\n";
std::cerr << " : Turning off sFit!" << std::endl;
doSFit_ = kFALSE;
return;
}
UInt_t nEvents = this->eventsPerExpt();
sWeights_.clear();
sWeights_.reserve( nEvents );
for (UInt_t iEvt = 0; iEvt < nEvents; ++iEvt) {
const LauFitData& dataValues = inputFitData_->getData(iEvt);
LauFitData::const_iterator iter = dataValues.find( sWeightBranchName_ );
sWeights_.push_back( iter->second * sWeightScaleFactor_ );
}
}
void LauAbsFitModel::fitExpt()
{
// Routine to perform the actual fit for the given experiment
// Reset the worst likelihood found to its catch-all value
worstLogLike_ = std::numeric_limits<Double_t>::max();
// Update initial fit parameters if required (e.g. if using random numbers).
this->checkInitFitParams();
// Initialise the fitter
LauFitter::fitter()->useAsymmFitErrors( this->useAsymmFitErrors() );
LauFitter::fitter()->twoStageFit( this->twoStageFit() );
LauFitter::fitter()->initialise( this, fitVars_ );
nParams_ = LauFitter::fitter()->nParameters();
nFreeParams_ = LauFitter::fitter()->nFreeParameters();
// Now ready for minimisation step
std::cout << "\nINFO in LauAbsFitModel::fitExpt : Start minimisation...\n";
std::pair<Int_t,Double_t> fitResult = LauFitter::fitter()->minimise();
fitStatus_ = fitResult.first;
NLL_ = fitResult.second;
// If we're doing a two stage fit we can now release (i.e. float)
// the 2nd stage parameters and re-fit
if (this->twoStageFit()) {
if ( fitStatus_ != 3 ) {
std::cerr << "ERROR in LauAbsFitModel:fitExpt : Not running second stage fit since first stage failed." << std::endl;
LauFitter::fitter()->releaseSecondStageParameters();
} else {
LauFitter::fitter()->fixFirstStageParameters();
LauFitter::fitter()->releaseSecondStageParameters();
nParams_ = LauFitter::fitter()->nParameters();
nFreeParams_ = LauFitter::fitter()->nFreeParameters();
fitResult = LauFitter::fitter()->minimise();
}
}
fitStatus_ = fitResult.first;
NLL_ = fitResult.second;
const TMatrixD& covMat = LauFitter::fitter()->covarianceMatrix();
covMatrix_.Clear();
covMatrix_.ResizeTo( covMat.GetNrows(), covMat.GetNcols() );
covMatrix_.SetMatrixArray( covMat.GetMatrixArray() );
// Store the final fit results and errors into protected internal vectors that
// all sub-classes can use within their own finalFitResults implementation
// used below (e.g. putting them into an ntuple in a root file)
LauFitter::fitter()->updateParameters();
LauFitter::fitter()->releaseFirstStageParameters();
}
void LauAbsFitModel::writeOutAllFitResults()
{
// Write out histograms at end
if (fitNtuple_ != 0) {
fitNtuple_->writeOutFitResults();
}
}
void LauAbsFitModel::calculateSPlotData()
{
if (sPlotNtuple_ != 0) {
sPlotNtuple_->addFriendTree(inputFitData_->fileName(), inputFitData_->treeName());
sPlotNtuple_->writeOutGenResults();
LauSPlot splot(sPlotNtuple_->fileName(), sPlotNtuple_->treeName(), this->firstExpt(), this->nExpt(),
this->variableNames(), this->freeSpeciesNames(), this->fixdSpeciesNames(), this->twodimPDFs(),
this->splitSignal(), this->scfDPSmear());
splot.runCalculations(sPlotVerbosity_);
splot.writeOutResults();
}
}
void LauAbsFitModel::compareFitData(UInt_t toyMCScale, const TString& mcFileName, const TString& tableFileName, Bool_t poissonSmearing)
{
compareFitData_ = kTRUE;
fitToyMCScale_ = toyMCScale;
fitToyMCFileName_ = mcFileName;
fitToyMCTableName_ = tableFileName;
fitToyMCPoissonSmear_ = poissonSmearing;
}
void LauAbsFitModel::createFitToyMC(const TString& mcFileName, const TString& tableFileName)
{
// Create a toy MC sample so that the user can compare the fitted
// result with the data.
// Generate more toy MC to reduce statistical fluctuations:
// - use the rescaling value fitToyMCScale_
// Store the info on the number of experiments, first expt and current expt
UInt_t oldNExpt(this->nExpt());
UInt_t oldFirstExpt(this->firstExpt());
UInt_t oldIExpt(iExpt_);
// Turn off Poisson smearing if required
Bool_t poissonSmearing(this->doPoissonSmearing());
this->doPoissonSmearing(fitToyMCPoissonSmear_);
// Turn off embedding, since we need toy MC, not reco'ed events
Bool_t enableEmbeddingOrig(this->enableEmbedding());
this->enableEmbedding(kFALSE);
// Need to make sure that the generation of the DP co-ordinates is
// switched on if any of our PDFs depend on it
Bool_t origUseDP = this->useDP();
if ( this->pdfsDependOnDP() && !origUseDP ) {
this->useDP( kTRUE );
this->initialiseDPModels();
}
// Construct a unique filename for this experiment
TString exptString("_expt");
exptString += oldIExpt;
TString fileName( mcFileName );
fileName.Insert( fileName.Last('.'), exptString );
// Generate the toy MC
std::cout << "INFO in LauAbsFitModel::createFitToyMC : Generating toy MC in " << fileName << " to compare fit with data..." << std::endl;
std::cout << " : Number of experiments to generate = " << fitToyMCScale_ << "." << std::endl;
std::cout << " : This is to allow the toy MC to be made with reduced statistical fluctuations." << std::endl;
// Set the genValue of each parameter to its current (fitted) value
// but first store the original genValues for restoring later
std::vector<Double_t> origGenValues; origGenValues.reserve(nParams_);
for (LauParameterPList::iterator iter = fitVars_.begin(); iter != fitVars_.end(); ++iter) {
origGenValues.push_back((*iter)->genValue());
(*iter)->genValue((*iter)->value());
}
// If we're asked to generate more than 100 experiments then split it
// up into multiple files since otherwise can run into memory issues
// when building the index
UInt_t totalExpts = fitToyMCScale_;
if ( totalExpts > 100 ) {
UInt_t nFiles = totalExpts/100;
if ( totalExpts%100 ) {
nFiles += 1;
}
for ( UInt_t iFile(0); iFile < nFiles; ++iFile ) {
UInt_t firstExp( iFile*100 );
// Set number of experiments and first experiment to generate
UInt_t nExp = ((firstExp + 100)>totalExpts) ? totalExpts-firstExp : 100;
this->setNExpts(nExp, firstExp);
// Create a unique filename and generate the events
TString extraname = "_file";
extraname += iFile;
fileName.Insert( fileName.Last('.'), extraname );
this->generate(fileName, "genResults", "dummy.root", tableFileName);
}
} else {
// Set number of experiments to new value
this->setNExpts(fitToyMCScale_, 0);
// Generate the toy
this->generate(fileName, "genResults", "dummy.root", tableFileName);
}
// Reset number of experiments to original value
iExpt_ = oldIExpt;
this->setNExpts(oldNExpt, oldFirstExpt);
// Restore the Poisson smearing to its former value
this->doPoissonSmearing(poissonSmearing);
// Restore the embedding status
this->enableEmbedding(enableEmbeddingOrig);
// Restore "useDP" to its former status
this->useDP( origUseDP );
// Restore the original genValue to each parameter
for (UInt_t i(0); i<nParams_; ++i) {
fitVars_[i]->genValue(origGenValues[i]);
}
std::cout << "INFO in LauAbsFitModel::createFitToyMC : Finished in createFitToyMC." << std::endl;
}
Double_t LauAbsFitModel::getTotNegLogLikelihood()
{
// Calculate the total negative log-likelihood over all events.
// This function assumes that the fit parameters and data tree have
// already been set-up correctly.
// Loop over the data points to calculate the log likelihood
Double_t logLike = this->getLogLikelihood( 0, this->eventsPerExpt() );
// Include the Poisson term in the extended likelihood if required
if (this->doEMLFit()) {
logLike -= this->getEventSum();
}
// Calculate any penalty terms from Gaussian constrained variables
if ( ! conVars_.empty() ){
logLike -= this->getLogLikelihoodPenalty();
}
Double_t totNegLogLike = -logLike;
return totNegLogLike;
}
Double_t LauAbsFitModel::getLogLikelihoodPenalty()
{
Double_t penalty(0.0);
for ( LauAbsRValuePList::const_iterator iter = conVars_.begin(); iter != conVars_.end(); ++iter ) {
Double_t val = (*iter)->value();
Double_t mean = (*iter)->constraintMean();
Double_t width = (*iter)->constraintWidth();
- Double_t term = ( val - mean ) / width;
- penalty += term*term;
+ Double_t term = ( val - mean )*( val - mean );
+ penalty += term/( 2*width*width );
}
return penalty;
}
Double_t LauAbsFitModel::getLogLikelihood( UInt_t iStart, UInt_t iEnd )
{
// Calculate the total negative log-likelihood over all events.
// This function assumes that the fit parameters and data tree have
// already been set-up correctly.
// Loop over the data points to calculate the log likelihood
Double_t logLike(0.0);
// Loop over the number of events in this experiment
Bool_t ok(kTRUE);
for (UInt_t iEvt = iStart; iEvt < iEnd; ++iEvt) {
Double_t likelihood = this->getTotEvtLikelihood(iEvt);
if (likelihood > DBL_MIN) { // Is the likelihood zero?
Double_t evtLogLike = TMath::Log(likelihood);
if ( doSFit_ ) {
evtLogLike *= sWeights_[iEvt];
}
logLike += evtLogLike;
} else {
ok = kFALSE;
std::cerr << "WARNING in LauAbsFitModel::getLogLikelihood : Strange likelihood value for event " << iEvt << ": " << likelihood << "\n";
this->printEventInfo(iEvt);
this->printVarsInfo(); //Write the values of the floated variables for which the likelihood is zero
break;
}
}
if (!ok) {
std::cerr << " : Returning worst NLL found so far to force MINUIT out of this region." << std::endl;
logLike = worstLogLike_;
} else if (logLike < worstLogLike_) {
worstLogLike_ = logLike;
}
return logLike;
}
void LauAbsFitModel::setParsFromMinuit(Double_t* par, Int_t npar)
{
// This function sets the internal parameters based on the values
// that Minuit is using when trying to minimise the total likelihood function.
// MINOS reports different numbers of free parameters depending on the
// situation, so disable this check
if ( ! withinAsymErrorCalc_ ) {
if (static_cast<UInt_t>(npar) != nFreeParams_) {
std::cerr << "ERROR in LauAbsFitModel::setParsFromMinuit : Unexpected number of free parameters: " << npar << ".\n";
std::cerr << " Expected: " << nFreeParams_ << ".\n" << std::endl;
gSystem->Exit(EXIT_FAILURE);
}
}
// Despite npar being the number of free parameters
// the par array actually contains all the parameters,
// free and floating...
// Update all the floating ones with their new values.
for (UInt_t i(0); i<nParams_; ++i) {
if (!fitVars_[i]->fixed()) {
fitVars_[i]->value(par[i]);
}
}
this->propagateParUpdates();
}
UInt_t LauAbsFitModel::addFitParameters(LauPdfList& pdfList)
{
UInt_t nParsAdded(0);
for (LauPdfList::iterator pdf_iter = pdfList.begin(); pdf_iter != pdfList.end(); ++pdf_iter) {
LauAbsPdf* pdf = (*pdf_iter);
if ( pdf->isDPDependent() ) {
this->pdfsDependOnDP( kTRUE );
}
LauAbsRValuePList& pars = pdf->getParameters();
for (LauAbsRValuePList::iterator pars_iter = pars.begin(); pars_iter != pars.end(); ++pars_iter) {
LauParameterPList params = (*pars_iter)->getPars();
for (LauParameterPList::iterator params_iter = params.begin(); params_iter != params.end(); ++params_iter) {
if ( !(*params_iter)->clone() && ( !(*params_iter)->fixed() ||
(this->twoStageFit() && ( (*params_iter)->secondStage() || (*params_iter)->firstStage())) ) ) {
fitVars_.push_back(*params_iter);
++nParsAdded;
}
}
}
}
return nParsAdded;
}
void LauAbsFitModel::addConstraint(const TString& formula, const std::vector<TString>& pars, const Double_t mean, const Double_t width)
{
StoreConstraints newCon;
newCon.formula_ = formula;
newCon.conPars_ = pars;
newCon.mean_ = mean;
newCon.width_ = width;
storeCon_.push_back(newCon);
}
void LauAbsFitModel::addConParameters()
{
for ( LauParameterPList::const_iterator iter = fitVars_.begin(); iter != fitVars_.end(); ++iter ) {
if ( (*iter)->gaussConstraint() ) {
conVars_.push_back( *iter );
std::cout << "INFO in LauAbsFitModel::addConParameters : Added Gaussian constraint to parameter "<< (*iter)->name() << std::endl;
}
}
// Add penalties from the constraints to fit parameters
for ( std::vector<StoreConstraints>::iterator iter = storeCon_.begin(); iter != storeCon_.end(); ++iter ) {
std::vector<TString> names = (*iter).conPars_;
std::vector<LauParameter*> params;
for ( std::vector<TString>::iterator iternames = names.begin(); iternames != names.end(); ++iternames ) {
for ( LauParameterPList::const_iterator iterfit = fitVars_.begin(); iterfit != fitVars_.end(); ++iterfit ) {
if ( (*iternames) == (*iterfit)->name() ){
params.push_back(*iterfit);
}
}
}
// If the parameters are not found, skip it
if ( params.size() != (*iter).conPars_.size() ) {
std::cerr << "WARNING in LauAbsFitModel::addConParameters: Could not find parameters to constrain in the formula... skipping" << std::endl;
continue;
}
LauFormulaPar* formPar = new LauFormulaPar( (*iter).formula_, (*iter).formula_, params );
formPar->addGaussianConstraint( (*iter).mean_, (*iter).width_ );
conVars_.push_back(formPar);
std::cout << "INFO in LauAbsFitModel::addConParameters : Added Gaussian constraint to formula\n";
std::cout << " : Formula: " << (*iter).formula_ << std::endl;
for ( std::vector<LauParameter*>::iterator iterparam = params.begin(); iterparam != params.end(); ++iterparam ) {
std::cout << "INFO in LauAbsFitModel::addConParameters : Parameter: " << (*iterparam)->name() << std::endl;
}
}
}
void LauAbsFitModel::updateFitParameters(LauPdfList& pdfList)
{
for (LauPdfList::iterator pdf_iter = pdfList.begin(); pdf_iter != pdfList.end(); ++pdf_iter) {
(*pdf_iter)->updatePulls();
}
}
void LauAbsFitModel::printFitParameters(const LauPdfList& pdfList, std::ostream& fout) const
{
LauPrint print;
for (LauPdfList::const_iterator pdf_iter = pdfList.begin(); pdf_iter != pdfList.end(); ++pdf_iter) {
const LauAbsRValuePList& pars = (*pdf_iter)->getParameters();
for (LauAbsRValuePList::const_iterator pars_iter = pars.begin(); pars_iter != pars.end(); ++pars_iter) {
LauParameterPList params = (*pars_iter)->getPars();
for (LauParameterPList::iterator params_iter = params.begin(); params_iter != params.end(); ++params_iter) {
if (!(*params_iter)->clone()) {
fout << (*params_iter)->name() << " & $";
print.printFormat(fout, (*params_iter)->value());
if ((*params_iter)->fixed() == kTRUE) {
fout << "$ (fixed) \\\\";
} else {
fout << " \\pm ";
print.printFormat(fout, (*params_iter)->error());
fout << "$ \\\\" << std::endl;
}
}
}
}
}
}
void LauAbsFitModel::cacheInfo(LauPdfList& pdfList, const LauFitDataTree& theData)
{
for (LauPdfList::iterator pdf_iter = pdfList.begin(); pdf_iter != pdfList.end(); ++pdf_iter) {
(*pdf_iter)->cacheInfo(theData);
}
}
Double_t LauAbsFitModel::prodPdfValue(LauPdfList& pdfList, UInt_t iEvt)
{
Double_t pdfVal = 1.0;
for (LauPdfList::iterator pdf_iter = pdfList.begin(); pdf_iter != pdfList.end(); ++pdf_iter) {
(*pdf_iter)->calcLikelihoodInfo(iEvt);
pdfVal *= (*pdf_iter)->getLikelihood();
}
return pdfVal;
}
void LauAbsFitModel::printEventInfo(UInt_t iEvt) const
{
const LauFitData& data = inputFitData_->getData(iEvt);
std::cerr << " : Input data values for this event:" << std::endl;
for (LauFitData::const_iterator iter = data.begin(); iter != data.end(); ++iter) {
std::cerr << " " << iter->first << " = " << iter->second << std::endl;
}
}
void LauAbsFitModel::printVarsInfo() const
{
std::cerr << " : Current values of fit parameters:" << std::endl;
for (UInt_t i(0); i<nParams_; ++i) {
std::cerr << " " << (fitVars_[i]->name()).Data() << " = " << fitVars_[i]->value() << std::endl;
}
}

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