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Index: trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats/JsonFormatter.java
===================================================================
--- trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats/JsonFormatter.java (revision 1851)
+++ trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats/JsonFormatter.java (revision 1852)
@@ -1,186 +1,218 @@
package cedar.hepdata.formats;
import cedar.hepdata.model.*;
import cedar.hepdata.util.*;
import cedar.hepdata.xml.*;
import cedar.hepdata.db.*;
import cedar.hepdata.webapp.components.*;
import java.util.*;
import java.text.*;
import java.io.File;
import java.io.*;
import org.antlr.stringtemplate.*;
-
import com.Ostermiller.util.SignificantFigures;
public class JsonFormatter {
public static String format(Paper p) {
StringBuffer s = new StringBuffer();
String s4=" ";
if(p == null) return null;
- s.append("\"record\": {\n");
+ s.append("{\n");
s.append(_headerXML(p));
String[] descs = { "description1" , "description2" , "description3" , "description4" };
String[] links = { "link1" , "link2" , "link3" , "link4" };
String[] ids = new String[3];
if(p.getSpiresId() != null ) { ids[0]=p.getSpiresId().toString(); } else { ids[0]=""; }
if(p.getInspireId() != null ) { ids[1]=p.getInspireId().toString(); } else { ids[1]=""; }
if(p.getRedId() != null ) { ids[2]=p.getRedId().toString(); } else { ids[2]=""; }
for (int i=0; i<descs.length; i++){
for(int j=0; j<ids.length; j++){
String descfile = "/home/hepdata/resource/" +ids[j] + "/" + descs[i];
String linkfile = "/home/hepdata/resource/" +ids[j] + "/" + links[i];
File testdesc = new File(descfile);
File testlink = new File(linkfile);
String desc="";
String link="";
if(testdesc.exists() && testlink.exists() ){
try {
BufferedReader in = new BufferedReader(new FileReader(descfile));
desc=in.readLine();
}
catch (IOException e){}
try {
BufferedReader in = new BufferedReader(new FileReader(linkfile));
link=in.readLine();
}
catch (IOException e){}
s.append(s4+"\"extra\" : {\n");
s.append(s4+s4+"\"description\" : \""+desc+"\"\n");
s.append(s4+s4+"\"link\" : \""+link+"\"\n");
s.append(s4+"}\n");
}
}
}
for (int j=0; j<ids.length; j++){
String insertfile = "/home/hepdata/resource/" +ids[j] + "/insert.html";
File testinsert = new File(insertfile);
String insert="";
if(testinsert.exists()){
s.append(s4+"\"inserthtml\": \"/resource/"+ids[j]+"/insert.html\"\n");
}
}
for (Dataset ds : p.getDatasets()){
- s.append(s4+"\"dataset\": {\n");
+ if(ds.getId() == 1) {
+ s.append(s4+"\"datasets\": [\n");
+ }
s.append(_metadataXML(ds));
- s.append(s4+"}\n");
+ if(ds.getId() == p.getDatasets().size()) {
+ s.append(s4+"}]\n");
+ } else {
+ s.append(s4+"},\n");
+ }
}
s.append(_footerXML());
s.append("}\n");
return s.toString();
}
public static String _getTimestamp(){
DateFormat dateFormat = new SimpleDateFormat("yyyyMMddHHmmss");
Date date = new Date();
return dateFormat.format(date);
}
public static String _headerXML(Paper p) {
String s4=" ";
StringBuffer s = new StringBuffer();
- s.append(s4+"\"inspireid\": \""+p.getInspireId()+"\"\n");
- if(p.getArchive()!=null) { s.append(s4+"\"archive\": \""+p.getArchive().replaceAll("ARXIV","arXiv")+"\"\n"); }
- s.append(s4+"\"dateupdated\": \""+p.getDateUpdated()+"\"\n");
- s.append(s4+"\"collaboration\": \""+p.getInformalName()+"\"\n");
+ s.append(s4+"\"inspireid\": \""+p.getInspireId()+"\",\n");
+ if(p.getArchive()!=null) { s.append(s4+"\"archive\": \""+p.getArchive().replaceAll("ARXIV","arXiv")+"\",\n"); }
+ s.append(s4+"\"dateupdated\": \""+p.getDateUpdated()+"\",\n");
+ s.append(s4+"\"collaboration\": \""+p.getInformalName()+"\",\n");
for (String comment : p.getComments()){
s.append(" \"comment\": \""+comment+"\",\n");
}
return s.toString();
}
public static String _footerXML() {
StringBuffer s = new StringBuffer();
return s.toString();
}
public static String _metadataXML(Dataset ds){
String s4=" ";
StringBuffer s = new StringBuffer();
int idbase=9000000;
int id=idbase+ds.getId();
String location = "";
Paper p = ds.getPaper();
for (String ct : ds.getComments()){
if(ct.startsWith("Location:")) {
location = ct.replaceFirst("Location:","");
- s.append(s4+s4+"\"label\": \""+ct.replaceFirst("Location:","Data from")+" from: "+p.getTitle()+"\"\n");
+ s.append(s4+s4+"{\"label\": \""+ct.replaceFirst("Location:","Data from")+" from: "+p.getTitle()+"\",\n");
}
}
for (String ct : ds.getComments()){
if(!ct.startsWith("Location:")) {
- s.append(s4+s4+"\"comment\": \""+ct.replaceFirst("VERBATIM","").replaceAll(">","&gt;").replaceAll("<","&lt;")+"\"\n");
+ s.append(s4+s4+"\"comment\": \""+ct.replaceFirst("VERBATIM","").replaceAll(">","&gt;").replaceAll("<","&lt;")+"\",\n");
}
}
for (String dsreac : ds.getDsReactions()){
- s.append(s4+s4+"\"reackey\": \""+dsreac+"\"\n");
+ s.append(s4+s4+"\"reackey\": \""+dsreac+"\",\n");
}
for (String dsobs : ds.getDsObservables()){
- s.append(s4+s4+"\"obskey\": \""+dsobs+"\"\n");
+ s.append(s4+s4+"\"obskey\": \""+dsobs+"\",\n");
}
for (String dsplab : ds.getDsPlabs()){
- s.append(s4+s4+"\"plabkey\": \""+dsplab+"\"\n");
+ s.append(s4+s4+"\"plabkey\": \""+dsplab+"\",\n");
}
+ s.append(s4+s4+"\"xaxes\": [\n");
for (XAxis xax : ds.getXAxes()){
- s.append(s4+s4+"\"xaxis\": {\n");
- s.append(s4+s4+s4+"\"xheader\": \""+xax.getHeader()+"\"\n");
- for (Bin bin : xax.getBins()){
- s.append(s4+s4+s4+"\"bin\": {\n");
- s.append(s4+s4+s4+s4+"\"id\": \""+bin.getId()+"\"\n");
- s.append(s4+s4+s4+s4+"\"relation\": \""+bin.getRelation()+"\"\n");
- s.append(s4+s4+s4+s4+"\"focus\": \""+bin.getFocus()+"\"\n");
- s.append(s4+s4+s4+s4+"\"high\": \""+bin.getHighValue()+"\"\n");
- s.append(s4+s4+s4+s4+"\"low\": \""+bin.getLowValue()+"\"\n");
- if(bin.getDescription() != null ) { s.append(s4+s4+s4+s4+"\"description\": \""+bin.getDescription()+"\"\n"); }
+ s.append(s4+s4+s4+"{\"xheader\": \""+xax.getHeader()+"\", \n");
+ s.append(s4+s4+s4+"\"bins\": [\n");
+ for (Bin bin : xax.getBins()){
+ s.append(s4+s4+s4+s4+"{\"id\": \""+bin.getId()+"\", ");
+ if(bin.getDescription() != null ) { s.append("\"description\": \""+bin.getDescription()+"\", \n"); }
+ s.append("\"relation\": \""+bin.getRelation()+"\", ");
+ s.append("\"focus\": \""+bin.getFocus()+"\", ");
+ s.append("\"high\": \""+bin.getHighValue()+"\", ");
+ s.append("\"low\": \""+bin.getLowValue()+"\"");
+ if(bin.getId() < xax.getBins().size()) {
+ s.append("},\n");
+ } else{
+ // s.append("}] * end of bin\n");
+ s.append("}]\n");
+ }
+ }
+ if(xax.getId() < ds.getXAxes().size()){
+ s.append(s4+s4+s4+"},\n");
+ } else {
s.append(s4+s4+s4+"}\n");
}
- s.append(s4+s4+"}\n");
}
+ s.append(s4+s4+"],\n");
+ s.append(s4+s4+"\"yaxes\": [\n");
for (YAxis yax : ds.getYAxes()){
- s.append(s4+s4+"\"yaxis\": {\n");
- s.append(s4+s4+s4+"\"yheader\": \""+yax.getHeader()+"\"\n");
+ s.append(s4+s4+s4+"{\"yheader\": \""+yax.getHeader()+"\", \n");
for (Property prop : yax.getProperties()){
- s.append(s4+s4+s4+"\"property\": \""+prop.getFull()+"\"\n");
+ s.append(s4+s4+s4+"\"property\": \""+prop.getFull()+"\", \n");
}
for (String comment : yax.getComments()){
- s.append(s4+s4+s4+"\"comment\": \""+comment+"\"\n");
+ s.append(s4+s4+s4+"\"comment\": \""+comment+"\", \n");
}
+ s.append(s4+s4+s4+"\"points\": [\n");
for (Point point : yax.getPoints()){
- s.append(s4+s4+s4+"\"point\": {\n");
- s.append(s4+s4+s4+s4+"\"id\": \""+point.getId()+"\"\n");
- s.append(s4+s4+s4+s4+"\"value\": \""+point.getValue()+"\"\n");
- for(PointError error : point.getErrors()){
- s.append(s4+s4+s4+s4+"\"error\": {\n");
- s.append(s4+s4+s4+s4+s4+"\"plus\": \""+error.getPlus()+"\"\n");
- s.append(s4+s4+s4+s4+s4+"\"minus\": \""+error.getMinus()+"\"\n");
- s.append(s4+s4+s4+s4+s4+"\"norm\": \""+error.getNormType()+"\"\n");
- s.append(s4+s4+s4+s4+s4+"\"type\": \""+error.getSourceType()+"\"\n");
-
- s.append(s4+s4+s4+s4+"}\n");
+ s.append(s4+s4+s4+s4+"{\"id\": \""+point.getId()+"\", ");
+ s.append("\"value\": \""+point.getValue()+"\"");
+ if(point.getErrors().size()>0){
+ s.append(", ");
+ s.append("\"errors\": [ ");
+ boolean first = true;
+ for(PointError error : point.getErrors()){
+ if(!first) { s.append(s4+s4+s4+s4+s4+s4+s4+s4+s4); }
+ first = false;
+ s.append("{\"plus\": \""+error.getPlus()+"\", ");
+ s.append("\"minus\": \""+error.getMinus()+"\", ");
+ s.append("\"norm\": \""+error.getNormType()+"\", ");
+ s.append("\"type\": \""+error.getSourceType()+"\"}");
+ if(error.getId() < point.getErrors().size()) {
+ s.append(",\n");
+ } else {
+ s.append("]\n");
+ }
+ }
}
+ if(point.getId() < yax.getPoints().size()){
+ s.append(s4+s4+s4+s4+"},\n");
+ } else {
+ s.append(s4+s4+s4+s4+"}]\n");
+ }
+ }
+ if(yax.getId() < ds.getYAxes().size()){
+ s.append(s4+s4+s4+"},\n");
+ } else {
s.append(s4+s4+s4+"}\n");
}
-
- s.append(s4+s4+"}\n");
}
+ s.append(s4+s4+"]\n");
return s.toString();
}
}

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