diff --git a/src/Utils/StatUtils.cxx b/src/Utils/StatUtils.cxx
index e67f864..c7de114 100644
--- a/src/Utils/StatUtils.cxx
+++ b/src/Utils/StatUtils.cxx
@@ -1,1229 +1,1226 @@
// Copyright 2016 L. Pickering, P Stowell, R. Terri, C. Wilkinson, C. Wret
/*******************************************************************************
* This file is part of NUISANCE.
*
* NUISANCE is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* NUISANCE is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with NUISANCE. If not, see <http://www.gnu.org/licenses/>.
*******************************************************************************/
#include "TH1D.h"
#include "StatUtils.h"
//*******************************************************************
Double_t StatUtils::GetChi2FromDiag(TH1D* data, TH1D* mc, TH1I* mask) {
//*******************************************************************
Double_t Chi2 = 0.0;
TH1D* calc_data = (TH1D*)data->Clone();
TH1D* calc_mc = (TH1D*)mc->Clone();
// Add MC Error to data if required
if (FitPar::Config().GetParB("statutils.addmcerror")) {
for (int i = 0; i < calc_data->GetNbinsX(); i++) {
double dterr = calc_data->GetBinError(i + 1);
double mcerr = calc_mc->GetBinError(i + 1);
if (dterr > 0.0) {
calc_data->SetBinError(i + 1, sqrt(dterr * dterr + mcerr * mcerr));
}
}
}
// Apply masking if required
if (mask) {
calc_data = ApplyHistogramMasking(data, mask);
calc_mc = ApplyHistogramMasking(mc, mask);
}
// Iterate over bins in X
for (int i = 0; i < calc_data->GetNbinsX(); i++) {
// Ignore bins with zero data or zero bin error
if (calc_data->GetBinError(i + 1) <= 0.0 ||
calc_data->GetBinContent(i + 1) == 0.0) continue;
// Take mc data difference
double diff = calc_data->GetBinContent(i + 1) - calc_mc->GetBinContent(i + 1);
double err = calc_data->GetBinError(i + 1);
Chi2 += (diff * diff) / (err * err);
}
// cleanup
delete calc_data;
delete calc_mc;
return Chi2;
};
//*******************************************************************
Double_t StatUtils::GetChi2FromDiag(TH2D* data, TH2D* mc,
TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map) map = GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate 1D chi2 from 1D Plots
Double_t Chi2 = StatUtils:: GetChi2FromDiag(data_1D, mc_1D, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return Chi2;
};
//*******************************************************************
Double_t StatUtils::GetChi2FromCov(TH1D* data, TH1D* mc,
TMatrixDSym* invcov, TH1I* mask) {
//*******************************************************************
Double_t Chi2 = 0.0;
TMatrixDSym* calc_cov = (TMatrixDSym*) invcov->Clone();
TH1D* calc_data = (TH1D*) data->Clone();
TH1D* calc_mc = (TH1D*) mc->Clone();
// If a mask if applied we need to apply it before the matrix is inverted
if (mask) {
calc_cov = ApplyInvertedMatrixMasking(invcov, mask);
calc_data = ApplyHistogramMasking(data, mask);
calc_mc = ApplyHistogramMasking(mc, mask);
}
// Add MC Error to data if required
if (FitPar::Config().GetParB("statutils.addmcerror")) {
// Make temp cov
TMatrixDSym* newcov = StatUtils::GetInvert(calc_cov);
// Add MC err to diag
for (int i = 0; i < calc_data->GetNbinsX(); i++) {
double mcerr = calc_mc->GetBinError(i + 1) * 1E38;
double oldval = (*newcov)(i, i);
(*newcov)(i, i) = oldval + mcerr * mcerr;
}
// Reset the calc_cov to new invert
delete calc_cov;
calc_cov = GetInvert(newcov);
// Delete the tempcov
delete newcov;
}
// iterate over bins in X (i,j)
for (int i = 0; i < calc_data->GetNbinsX(); i++) {
for (int j = 0; j < calc_data->GetNbinsX(); j++) {
if (calc_data->GetBinContent(i + 1) != 0 || calc_mc->GetBinContent(i + 1) != 0) {
LOG(DEB) << "i j = " << i << " " << j << std::endl;
LOG(DEB) << "Calc_data mc i = " << calc_data->GetBinContent(i + 1)
<< " " << calc_mc->GetBinContent(i + 1)
<< " Dif = "
<< ( calc_data->GetBinContent(i + 1) - calc_mc->GetBinContent(i + 1) )
<< std::endl;
LOG(DEB) << "Calc_data mc i = " << calc_data->GetBinContent(j + 1)
<< " " << calc_mc->GetBinContent(j + 1)
<< " Dif = "
<< ( calc_data->GetBinContent(j + 1) - calc_mc->GetBinContent(j + 1) )
<< std::endl;
LOG(DEB) << "Covar = " << (*calc_cov)(i, j) << std::endl;
LOG(DEB) << "Cont chi2 = " \
<< ( ( calc_data->GetBinContent(i + 1) - calc_mc->GetBinContent(i + 1) ) \
* (*calc_cov)(i, j) \
* 1E76 \
* ( calc_data->GetBinContent(j + 1) - calc_mc->GetBinContent(j + 1) ) )
<< " " << Chi2 << std::endl;
Chi2 += ( ( calc_data->GetBinContent(i + 1) - calc_mc->GetBinContent(i + 1) ) * \
(*calc_cov)(i, j) * 1E76 * \
( calc_data->GetBinContent(j + 1) - calc_mc->GetBinContent(j + 1) ) );
} else {
LOG(DEB) << "Error on bin (i,j) = (" << i << "," << j << ")" << std::endl;
LOG(DEB) << "data->GetBinContent(i+1) = " << calc_data->GetBinContent(i + 1) << std::endl;
LOG(DEB) << "mc->GetBinContent(i+1) = " << calc_mc->GetBinContent(i + 1) << std::endl;
LOG(DEB) << "Adding zero to chi2 instead of dying horrifically " << std::endl;
Chi2 += 0.;
}
}
}
// Cleanup
delete calc_cov;
delete calc_data;
delete calc_mc;
return Chi2;
}
//*******************************************************************
Double_t StatUtils::GetChi2FromCov( TH2D* data, TH2D* mc,
TMatrixDSym* invcov, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map) {
map = StatUtils::GenerateMap(data);
}
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate 1D chi2 from 1D Plots
Double_t Chi2 = StatUtils::GetChi2FromCov(data_1D, mc_1D, invcov, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return Chi2;
}
//*******************************************************************
Double_t StatUtils::GetChi2FromSVD( TH1D* data, TH1D* mc,
TMatrixDSym* cov, TH1I* mask) {
//*******************************************************************
Double_t Chi2 = 0.0;
TMatrixDSym* calc_cov = (TMatrixDSym*) cov->Clone();
TH1D* calc_data = (TH1D*) data->Clone();
TH1D* calc_mc = (TH1D*) mc->Clone();
// If a mask if applied we need to apply it before the matrix is inverted
if (mask) {
calc_cov = StatUtils::ApplyMatrixMasking(cov, mask);
calc_data = StatUtils::ApplyHistogramMasking(data, mask);
calc_mc = StatUtils::ApplyHistogramMasking(mc, mask);
}
// Decompose matrix
TDecompSVD LU = TDecompSVD((*calc_cov));
LU.Decompose();
TMatrixDSym* cov_U = new TMatrixDSym(calc_data->GetNbinsX(), LU .GetU().GetMatrixArray(), "");
TVectorD* cov_S = new TVectorD( LU.GetSig() );
// Apply basis rotation before adding up chi2
Double_t rotated_difference = 0.0;
for (int i = 0; i < calc_data->GetNbinsX(); i++) {
rotated_difference = 0.0;
// Rotate basis of Data - MC
for (int j = 0; j < calc_data->GetNbinsY(); j++)
rotated_difference += ( calc_data->GetBinContent(j + 1) - calc_mc ->GetBinContent(j + 1) ) * (*cov_U)(j, i) ;
// Divide by rotated error cov_S
Chi2 += rotated_difference * rotated_difference * 1E76 / (*cov_S)(i);
}
// Cleanup
delete calc_cov;
delete calc_data;
delete calc_mc;
delete cov_U;
delete cov_S;
return Chi2;
}
//*******************************************************************
Double_t StatUtils::GetChi2FromSVD( TH2D* data, TH2D* mc,
TMatrixDSym* cov, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map)
map = StatUtils::GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate from 1D
Double_t Chi2 = StatUtils::GetChi2FromSVD(data_1D, mc_1D, cov, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return Chi2;
}
//*******************************************************************
double StatUtils::GetChi2FromEventRate(TH1D* data, TH1D* mc, TH1I* mask) {
//*******************************************************************
// If just an event rate, for chi2 just use Poission Likelihood to calculate the chi2 component
double chi2 = 0.0;
TH1D* calc_data = (TH1D*)data->Clone();
TH1D* calc_mc = (TH1D*)mc->Clone();
// Apply masking if required
if (mask) {
calc_data = ApplyHistogramMasking(data, mask);
calc_mc = ApplyHistogramMasking(mc, mask);
}
// Iterate over bins in X
for (int i = 0; i < calc_data->GetNbinsX(); i++) {
double dt = calc_data->GetBinContent(i + 1);
double mc = calc_mc->GetBinContent(i + 1);
if (mc <= 0) continue;
if (dt <= 0) {
// Only add difference
chi2 += 2 * (mc - dt);
} else {
// Do the chi2 for Poisson distributions
chi2 += 2 * (mc - dt + (dt * log(dt / mc)));
}
/*
LOG(REC)<<"Evt Chi2 cont = "<<i<<" "
<<mc<<" "<<dt<<" "
<<2 * (mc - dt + (dt+0.) * log((dt+0.) / (mc+0.)))
<<" "<<Chi2<<std::endl;
*/
}
// cleanup
delete calc_data;
delete calc_mc;
return chi2;
}
//*******************************************************************
Double_t StatUtils::GetChi2FromEventRate(TH2D* data, TH2D* mc, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map)
map = StatUtils::GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate from 1D
Double_t Chi2 = StatUtils::GetChi2FromEventRate(data_1D, mc_1D, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return Chi2;
}
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromDiag(TH1D* data, TH1D* mc, TH1I* mask) {
//*******************************************************************
// Currently just a placeholder!
(void) data;
(void) mc;
(void) mask;
return 0.0;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromDiag(TH2D* data, TH2D* mc, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map)
map = StatUtils::GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate from 1D
Double_t MLE = StatUtils::GetLikelihoodFromDiag(data_1D, mc_1D, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return MLE;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromCov( TH1D* data, TH1D* mc, TMatrixDSym* invcov, TH1I* mask) {
//*******************************************************************
// Currently just a placeholder !
(void) data;
(void) mc;
(void) invcov;
(void) mask;
return 0.0;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromCov( TH2D* data, TH2D* mc, TMatrixDSym* invcov, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map)
map = StatUtils::GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate from 1D
Double_t MLE = StatUtils::GetLikelihoodFromCov(data_1D, mc_1D, invcov, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return MLE;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromSVD( TH1D* data, TH1D* mc, TMatrixDSym* cov, TH1I* mask) {
//*******************************************************************
// Currently just a placeholder!
(void) data;
(void) mc;
(void) cov;
(void) mask;
return 0.0;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromSVD( TH2D* data, TH2D* mc, TMatrixDSym* cov, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map)
map = StatUtils::GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate from 1D
Double_t MLE = StatUtils::GetLikelihoodFromSVD(data_1D, mc_1D, cov, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return MLE;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromEventRate(TH1D* data, TH1D* mc, TH1I* mask) {
//*******************************************************************
// Currently just a placeholder!
(void) data;
(void) mc;
(void) mask;
return 0.0;
};
//*******************************************************************
Double_t StatUtils::GetLikelihoodFromEventRate(TH2D* data, TH2D* mc, TH2I* map, TH2I* mask) {
//*******************************************************************
// Generate a simple map
if (!map)
map = StatUtils::GenerateMap(data);
// Convert to 1D Histograms
TH1D* data_1D = MapToTH1D(data, map);
TH1D* mc_1D = MapToTH1D(mc, map);
TH1I* mask_1D = MapToMask(mask, map);
// Calculate from 1D
Double_t MLE = StatUtils::GetChi2FromEventRate(data_1D, mc_1D, mask_1D);
// CleanUp
delete data_1D;
delete mc_1D;
delete mask_1D;
return MLE;
};
//*******************************************************************
Int_t StatUtils::GetNDOF(TH1D* hist, TH1I* mask) {
//*******************************************************************
TH1D* calc_hist = (TH1D*)hist->Clone();
// If a mask is provided we need to apply it before getting NDOF
if (mask) {
calc_hist = StatUtils::ApplyHistogramMasking(hist, mask);
}
// NDOF is defined as total number of bins with non-zero errors
Int_t NDOF = 0;
for (int i = 0; i < calc_hist->GetNbinsX(); i++) {
if (calc_hist->GetBinError(i + 1) > 0.0) NDOF++;
}
delete calc_hist;
return NDOF;
};
//*******************************************************************
Int_t StatUtils::GetNDOF(TH2D* hist, TH2I* map, TH2I* mask) {
//*******************************************************************
Int_t NDOF = 0;
if (!map) map = StatUtils::GenerateMap(hist);
for (int i = 0; i < hist->GetNbinsX(); i++) {
for (int j = 0; j < hist->GetNbinsY(); j++) {
if (mask->GetBinContent(i + 1, j + 1)) continue;
if (map->GetBinContent(i + 1, j + 1) <= 0) continue;
NDOF++;
}
}
return NDOF;
};
//*******************************************************************
TH1D* StatUtils::ThrowHistogram(TH1D* hist, TMatrixDSym* cov, bool throwdiag, TH1I* mask) {
//*******************************************************************
TH1D* calc_hist = (TH1D*) hist->Clone( (std::string(hist->GetName()) + "_THROW" ).c_str() );
TMatrixDSym* calc_cov = (TMatrixDSym*) cov->Clone();
Double_t correl_val = 0.0;
// If a mask if applied we need to apply it before the matrix is decomposed
if (mask) {
calc_cov = ApplyMatrixMasking(cov, mask);
calc_hist = ApplyHistogramMasking(calc_hist, mask);
}
// If a covariance is provided we need a preset random vector and a decomp
std::vector<Double_t> rand_val;
TMatrixDSym* decomp_cov;
if (cov) {
for (int i = 0; i < hist->GetNbinsX(); i++) {
rand_val.push_back(gRandom->Gaus(0.0, 1.0));
}
// Decomp the matrix
decomp_cov = StatUtils::GetDecomp(calc_cov);
}
// iterate over bins
for (int i = 0; i < hist->GetNbinsX(); i++) {
// By Default the errors on the histogram are thrown uncorrelated to the other errors
- if (throwdiag) {
- calc_hist->SetBinContent(i + 1, (calc_hist->GetBinContent(i + 1) + \
- gRandom->Gaus(0.0, 1.0) * calc_hist->GetBinError(i + 1)) );
- }
+ // if (throwdiag) {
+ // calc_hist->SetBinContent(i + 1, (calc_hist->GetBinContent(i + 1) + \
+ gRandom->Gaus(0.0, 1.0) * calc_hist->GetBinError(i + 1)) );
+ // }
// If a covariance is provided that is also thrown
if (cov) {
correl_val = 0.0;
for (int j = 0; j < hist->GetNbinsX(); j++) {
correl_val += rand_val[j] * (*decomp_cov)(j, i) ;
- }
-
- // std::cout << "Throwing val " << calc_hist->GetBinContent(i+1) << " -> " << calc_hist->GetBinContent(i+1) + correl_val*1E-38 << std::endl;
- calc_hist->SetBinContent(i + 1, (calc_hist->GetBinContent(i + 1) + \
- correl_val * 1E-38));
+ }
+ calc_hist->SetBinContent(i + 1, (calc_hist->GetBinContent(i + 1) + correl_val * 1E-38));
}
}
delete calc_cov;
delete decomp_cov;
// return this new thrown data
return calc_hist;
};
//*******************************************************************
TH2D* StatUtils::ThrowHistogram(TH2D* hist, TMatrixDSym* cov, TH2I* map, bool throwdiag, TH2I* mask) {
//*******************************************************************
// PLACEHOLDER!!!!!!!!!
// Currently no support for throwing 2D Histograms from a covariance
(void) hist;
(void) cov;
(void) map;
(void) throwdiag;
(void) mask;
// /todo
// Sort maps if required
// Throw the covariance for a 1D plot
// Unmap back to 2D Histogram
return hist;
}
//*******************************************************************
TH1D* StatUtils::ApplyHistogramMasking(TH1D* hist, TH1I* mask) {
//*******************************************************************
if (!mask) return ( (TH1D*)hist->Clone() );
// This masking is only sufficient for chi2 calculations, and will have dodgy bin edges.
// Get New Bin Count
Int_t NBins = 0;
for (int i = 0; i < hist->GetNbinsX(); i++) {
if (mask->GetBinContent(i + 1)) continue;
NBins++;
}
// Make new hist
std::string newmaskname = std::string(hist->GetName()) + "_MSKD";
TH1D* calc_hist = new TH1D( newmaskname.c_str(), newmaskname.c_str(), NBins, 0, NBins);
// fill new hist
int binindex = 0;
for (int i = 0; i < hist->GetNbinsX(); i++) {
if (mask->GetBinContent(i + 1)) {
LOG(REC) << "Applying mask to bin " << i + 1 << " " << hist->GetName() << std::endl;
continue;
}
calc_hist->SetBinContent(binindex + 1, hist->GetBinContent(i + 1));
calc_hist->SetBinError(binindex + 1, hist->GetBinError(i + 1));
binindex++;
}
return calc_hist;
};
//*******************************************************************
TH2D* StatUtils::ApplyHistogramMasking(TH2D* hist, TH2I* mask) {
//*******************************************************************
TH2D* newhist = (TH2D*) hist->Clone();
if (!mask) return newhist;
for (int i = 0; i < hist->GetNbinsX(); i++) {
for (int j = 0; j < hist->GetNbinsY(); j++) {
if (mask->GetBinContent(i + 1, j + 1) > 0) {
newhist->SetBinContent(i + 1, j + 1, 0.0);
newhist->SetBinContent(i + 1, j + 1, 0.0);
}
}
}
return newhist;
}
//*******************************************************************
TMatrixDSym* StatUtils::ApplyMatrixMasking(TMatrixDSym* mat, TH1I* mask) {
//*******************************************************************
if (!mask) return (TMatrixDSym*)(mat->Clone());
// Get New Bin Count
Int_t NBins = 0;
for (int i = 0; i < mask->GetNbinsX(); i++) {
if (mask->GetBinContent(i + 1)) continue;
NBins++;
}
// make new matrix
TMatrixDSym* calc_mat = new TMatrixDSym(NBins);
int col, row;
// Need to mask out bins in the current matrix
row = 0;
for (int i = 0; i < mask->GetNbinsX(); i++) {
col = 0;
// skip if masked
if (mask->GetBinContent(i + 1) > 0.5) continue;
for (int j = 0; j < mask->GetNbinsX(); j++) {
// skip if masked
if (mask->GetBinContent(j + 1) > 0.5) continue;
(*calc_mat)(row, col) = (*mat)(i, j);
col++;
}
row++;
}
return calc_mat;
};
//*******************************************************************
TMatrixDSym* StatUtils::ApplyMatrixMasking(TMatrixDSym* mat, TH2D* data, TH2I* mask, TH2I* map) {
//*******************************************************************
if (!map) map = StatUtils::GenerateMap(data);
TH1I* mask_1D = StatUtils::MapToMask(mask, map);
TMatrixDSym* newmat = StatUtils::ApplyMatrixMasking(mat, mask_1D);
delete mask_1D;
return newmat;
}
//*******************************************************************
TMatrixDSym* StatUtils::ApplyInvertedMatrixMasking(TMatrixDSym* mat, TH1I* mask) {
//*******************************************************************
TMatrixDSym* new_mat = GetInvert(mat);
TMatrixDSym* masked_mat = ApplyMatrixMasking(new_mat, mask);
TMatrixDSym* inverted_mat = GetInvert(masked_mat);
delete masked_mat;
delete new_mat;
return inverted_mat;
};
//*******************************************************************
TMatrixDSym* StatUtils::ApplyInvertedMatrixMasking(TMatrixDSym* mat, TH2D* data, TH2I* mask, TH2I* map) {
//*******************************************************************
if (!map) map = StatUtils::GenerateMap(data);
TH1I* mask_1D = StatUtils::MapToMask(mask, map);
TMatrixDSym* newmat = ApplyInvertedMatrixMasking(mat, mask_1D);
delete mask_1D;
return newmat;
}
//*******************************************************************
TMatrixDSym* StatUtils::GetInvert(TMatrixDSym* mat) {
//*******************************************************************
TMatrixDSym* new_mat = (TMatrixDSym*)mat->Clone();
// Check for diagonal
bool non_diagonal = false;
for (int i = 0; i < new_mat->GetNrows(); i++) {
for (int j = 0; j < new_mat->GetNrows(); j++) {
if (i == j) continue;
if ((*new_mat)(i, j) != 0.0) {
non_diagonal = true;
break;
}
}
}
// If diag, just flip the diag
if (!non_diagonal or new_mat->GetNrows() == 1) {
for (int i = 0; i < new_mat->GetNrows(); i++) {
if ((*new_mat)(i, i) != 0.0)
(*new_mat)(i, i) = 1.0 / (*new_mat)(i, i);
else
(*new_mat)(i, i) = 0.0;
}
return new_mat;
}
// Invert full matrix
TDecompSVD LU = TDecompSVD((*new_mat));
new_mat = new TMatrixDSym(new_mat->GetNrows(), LU.Invert().GetMatrixArray(), "");
return new_mat;
}
//*******************************************************************
TMatrixDSym* StatUtils::GetDecomp(TMatrixDSym* mat) {
//*******************************************************************
TMatrixDSym* new_mat = (TMatrixDSym*)mat->Clone();
int nrows = new_mat->GetNrows();
// Check for diagonal
bool diagonal = true;
for (int i = 0; i < nrows; i++) {
for (int j = 0; j < nrows; j++) {
if (i == j) continue;
if ((*new_mat)(i, j) != 0.0) {
diagonal = false;
break;
}
}
}
// If diag, just flip the diag
if (diagonal or nrows == 1) {
for (int i = 0; i < nrows; i++) {
if ((*new_mat)(i, i) > 0.0)
(*new_mat)(i, i) = sqrt((*new_mat)(i, i));
else
(*new_mat)(i, i) = 0.0;
}
return new_mat;
}
TDecompChol LU = TDecompChol(*new_mat);
LU.Decompose();
delete new_mat;
TMatrixDSym* dec_mat = new TMatrixDSym(nrows, LU.GetU().GetMatrixArray(), "");
return dec_mat;
}
//*******************************************************************
void StatUtils::ForceNormIntoCovar(TMatrixDSym* mat, TH1D* hist, double norm) {
//*******************************************************************
if (!mat) mat = MakeDiagonalCovarMatrix(hist);
int nbins = mat->GetNrows();
TMatrixDSym* new_mat = new TMatrixDSym(nbins);
for (int i = 0; i < nbins; i++) {
for (int j = 0; j < nbins; j++) {
double valx = hist->GetBinContent(i + 1) * 1E38;
double valy = hist->GetBinContent(j + 1) * 1E38;
(*new_mat)(i, j) = (*mat)(i, j) + norm * norm * valx * valy;
}
}
// Swap the two
delete mat;
mat = new_mat;
return;
};
//*******************************************************************
void StatUtils::ForceNormIntoCovar(TMatrixDSym* mat, TH2D* data, double norm, TH2I* map ) {
//*******************************************************************
if (!map) map = StatUtils::GenerateMap(data);
TH1D* data_1D = MapToTH1D(data, map);
StatUtils::ForceNormIntoCovar(mat, data_1D, norm);
delete data_1D;
return;
}
//*******************************************************************
TMatrixDSym* StatUtils::MakeDiagonalCovarMatrix(TH1D* data, double scaleF) {
//*******************************************************************
TMatrixDSym* newmat = new TMatrixDSym(data->GetNbinsX());
for (int i = 0; i < data->GetNbinsX(); i++) {
(*newmat)(i, i) = data->GetBinError(i + 1) * data->GetBinError(i + 1) * scaleF * scaleF;
}
return newmat;
}
//*******************************************************************
TMatrixDSym* StatUtils::MakeDiagonalCovarMatrix(TH2D* data, TH2I* map, double scaleF) {
//*******************************************************************
if (!map) map = StatUtils::GenerateMap(data);
TH1D* data_1D = MapToTH1D(data, map);
return StatUtils::MakeDiagonalCovarMatrix(data_1D, scaleF);
};
//*******************************************************************
void StatUtils::SetDataErrorFromCov(TH1D* data, TMatrixDSym* cov, double scale) {
//*******************************************************************
// Check
if (cov->GetNrows() != data->GetNbinsX()) {
ERR(WRN) << "Nrows in cov don't match nbins in data for SetDataErrorFromCov" << std::endl;
}
// Set bin errors form cov diag
for (int i = 0; i < data->GetNbinsX(); i++) {
data->SetBinError(i + 1, sqrt((*cov)(i, i)) * scale );
}
return;
}
//*******************************************************************
void StatUtils::SetDataErrorFromCov(TH2D* data, TMatrixDSym* cov, TH2I* map, double scale) {
//*******************************************************************
// Create map if required
if (!map) map = StatUtils::GenerateMap(data);
std::cout << data << " " << cov << " " << map << " " << scale << std::endl;
// Set Bin Errors from cov diag
int count = 0;
for (int i = 0; i < data->GetNbinsX(); i++) {
for (int j = 0; j < data->GetNbinsY(); j++) {
if (data->GetBinContent(i + 1, j + 1) == 0.0) continue;
count = map->GetBinContent(i + 1, j + 1) - 1;
data->SetBinError(i + 1, j + 1, sqrt((*cov)(count, count)) * scale );
}
}
return;
}
//*******************************************************************
TH2I* StatUtils::GenerateMap(TH2D* hist) {
//*******************************************************************
std::string maptitle = std::string(hist->GetName()) + "_MAP";
TH2I* map = new TH2I( maptitle.c_str(), maptitle.c_str(),
hist->GetNbinsX(), 0, hist->GetNbinsX(),
hist->GetNbinsY(), 0, hist->GetNbinsY());
Int_t index = 1;
for (int i = 0; i < hist->GetNbinsX(); i++) {
for (int j = 0; j < hist->GetNbinsY(); j++) {
if (hist->GetBinContent(i + 1, j + 1) > 0 && hist->GetBinError(i + 1, j + 1) > 0) {
map->SetBinContent(i + 1, j + 1, index);
index++;
} else {
map->SetBinContent(i + 1, j + 1, 0);
}
}
}
return map;
}
//*******************************************************************
TH1D* StatUtils::MapToTH1D(TH2D* hist, TH2I* map) {
//*******************************************************************
if (!hist) return NULL;
// Get N bins for 1D plot
Int_t Nbins = map->GetMaximum();
std::string name1D = std::string(hist->GetName()) + "_1D";
// Make new 1D Hist
TH1D* newhist = new TH1D(name1D.c_str(), name1D.c_str(), Nbins, 0, Nbins);
// map bin contents
for (int i = 0; i < map->GetNbinsX(); i++) {
for (int j = 0; j < map->GetNbinsY(); j++) {
if (map->GetBinContent(i + 1, j + 1) == 0) continue;
newhist->SetBinContent(map->GetBinContent(i + 1, j + 1), hist->GetBinContent(i + 1, j + 1));
newhist->SetBinError(map->GetBinContent(i + 1, j + 1), hist->GetBinError(i + 1, j + 1));
}
}
// return
return newhist;
}
//*******************************************************************
TH1I* StatUtils::MapToMask(TH2I* hist, TH2I* map) {
//*******************************************************************
TH1I* newhist = NULL;
if (!hist) return newhist;
// Get N bins for 1D plot
Int_t Nbins = map->GetMaximum();
std::string name1D = std::string(hist->GetName()) + "_1D";
// Make new 1D Hist
newhist = new TH1I(name1D.c_str(), name1D.c_str(), Nbins, 0, Nbins);
// map bin contents
for (int i = 0; i < map->GetNbinsX(); i++) {
for (int j = 0; j < map->GetNbinsY(); j++) {
if (map->GetBinContent(i + 1, j + 1) == 0) continue;
newhist->SetBinContent(map->GetBinContent(i + 1, j + 1), hist->GetBinContent(i + 1, j + 1));
}
}
// return
return newhist;
}
TMatrixDSym* StatUtils::GetCovarFromCorrel(TMatrixDSym* correl, TH1D* data) {
int nbins = correl->GetNrows();
TMatrixDSym* covar = new TMatrixDSym(nbins);
for (int i = 0; i < nbins; i++) {
for (int j = 0; j < nbins; j++) {
(*covar)(i, j) = (*correl)(i, j) * data->GetBinError(i + 1) * data->GetBinError(j + 1);
}
}
return covar;
}
//*******************************************************************
TMatrixD* StatUtils::GetMatrixFromTextFile(std::string covfile, int dimx, int dimy) {
//*******************************************************************
// Determine dim
if (dimx == -1 and dimy == -1) {
std::string line;
std::ifstream covar(covfile.c_str(), ifstream::in);
int row = 0;
while (std::getline(covar >> std::ws, line, '\n')) {
int column = 0;
std::vector<double> entries = GeneralUtils::ParseToDbl(line, " ");
for (std::vector<double>::iterator iter = entries.begin();
iter != entries.end(); iter++) {
column++;
if (column > dimx) dimx = column;
}
row++;
if (row > dimy) dimy = row;
}
}
// Or assume symmetric
if (dimx != -1 and dimy == -1) {
dimy = dimx;
}
assert(dimy != -1 && " matrix dimy not set.");
// Make new matrix
TMatrixD* mat = new TMatrixD(dimx, dimy);
std::string line;
std::ifstream covar(covfile.c_str(), ifstream::in);
int row = 0;
while (std::getline(covar >> std::ws, line, '\n')) {
int column = 0;
std::vector<double> entries = GeneralUtils::ParseToDbl(line, " ");
for (std::vector<double>::iterator iter = entries.begin();
iter != entries.end(); iter++) {
// Check Rows
//assert(row > mat->GetNrows() && " covar rows doesn't match matrix rows.");
//assert(column > mat->GetNcols() && " covar cols doesn't match matrix cols.");
// Fill Matrix
(*mat)(row, column) = (*iter);
column++;
}
row++;
}
return mat;
}
//*******************************************************************
TMatrixD* StatUtils::GetMatrixFromRootFile(std::string covfile, std::string histname) {
//*******************************************************************
std::string inputfile = covfile + ";" + histname;
std::vector<std::string> splitfile = GeneralUtils::ParseToStr(inputfile, ";");
if (splitfile.size() < 2) {
ERR(FTL) << "No object name given!" << std::endl;
throw;
}
// Get file
TFile* tempfile = new TFile(splitfile[0].c_str(), "READ");
// Get Object
TObject* obj = tempfile->Get(splitfile[1].c_str());
if (!obj) {
ERR(FTL) << "Object " << splitfile[1] << " doesn't exist!" << std::endl;
throw;
}
// Try casting
TMatrixD* mat = dynamic_cast<TMatrixD*>(obj);
if (mat) {
TMatrixD* newmat = (TMatrixD*)mat->Clone();
delete mat;
tempfile->Close();
return newmat;
}
TMatrixDSym* matsym = dynamic_cast<TMatrixDSym*>(obj);
if (matsym) {
TMatrixD* newmat = new TMatrixD(matsym->GetNrows(), matsym->GetNrows());
for (int i = 0; i < matsym->GetNrows(); i++) {
for (int j = 0; j < matsym->GetNrows(); j++) {
(*newmat)(i, j) = (*matsym)(i, j);
}
}
delete matsym;
tempfile->Close();
return newmat;
}
TH2D* mathist = dynamic_cast<TH2D*>(obj);
if (mathist) {
TMatrixD* newmat = new TMatrixD(mathist->GetNbinsX(), mathist->GetNbinsX());
for (int i = 0; i < mathist->GetNbinsX(); i++) {
for (int j = 0; j < mathist->GetNbinsX(); j++) {
(*newmat)(i, j) = mathist->GetBinContent(i + 1, j + 1);
}
}
delete mathist;
tempfile->Close();
return newmat;
}
return NULL;
}
//*******************************************************************
TMatrixDSym* StatUtils::GetCovarFromTextFile(std::string covfile, int dim){
//*******************************************************************
// Delete TempMat
TMatrixD* tempmat = GetMatrixFromTextFile(covfile, dim, dim);
// Make a symmetric covariance
TMatrixDSym* newmat = new TMatrixDSym(tempmat->GetNrows());
for (int i = 0; i < tempmat->GetNrows(); i++){
for (int j = 0; j < tempmat->GetNrows(); j++){
(*newmat)(i,j) = (*tempmat)(i,j);
}
}
delete tempmat;
return newmat;
}
//*******************************************************************
TMatrixDSym* StatUtils::GetCovarFromRootFile(std::string covfile, std::string histname){
//*******************************************************************
TMatrixD* tempmat = GetMatrixFromRootFile(covfile, histname);
TMatrixDSym* newmat = new TMatrixDSym(tempmat->GetNrows());
for (int i = 0; i < tempmat->GetNrows(); i++){
for (int j = 0; j < tempmat->GetNrows(); j++){
(*newmat)(i,j) = (*tempmat)(i,j);
}
}
delete tempmat;
return newmat;
}