Index: trunk/hepdata-webapp/src/main/java/cedar/hepdata/webapp/components/DatasetAsHtml.java
===================================================================
--- trunk/hepdata-webapp/src/main/java/cedar/hepdata/webapp/components/DatasetAsHtml.java (revision 1828)
+++ trunk/hepdata-webapp/src/main/java/cedar/hepdata/webapp/components/DatasetAsHtml.java (revision 1829)
@@ -1,805 +1,805 @@
package cedar.hepdata.webapp.components;
import org.apache.tapestry5.MarkupWriter;
import org.apache.tapestry5.annotations.BeginRender;
import org.apache.tapestry5.annotations.Parameter;
import org.apache.tapestry5.annotations.Path;
import org.apache.tapestry5.ioc.annotations.*;
import org.apache.tapestry5.services.*;
import org.apache.tapestry5.Asset;
import cedar.hepdata.model.*;
import cedar.hepdata.util.*;
import cedar.hepdata.webapp.pages.*;
import com.Ostermiller.util.SignificantFigures;
import java.text.*;
import java.util.*;
import java.io.*;
import java.io.File;
public class DatasetAsHtml {
@Inject
private RequestGlobals _reqGlobals;
@Inject
@Path("context:/button_expand.png")
private Asset button_expand;
@Inject
@Path("context:/button_hide.png")
private Asset button_hide;
@Parameter
private String _format;
public String getFormat() { return _format; }
public void getFormat(String f) { _format = f; }
@BeginRender
void renderMessage(MarkupWriter writer) {
String dsid = "datacell"+_dataset.getId().toString();
// Output the table comment(CT) omitting the location(TFP)
// writer.element("p");
writer.attributes("class", "datasetcomments");
boolean verbatim = false;
boolean plotit = true;
for (String comment : _dataset.getComments()) {
if(!comment.startsWith("Location")){
if(comment.startsWith("VERBATIM")){verbatim = true;}
int ls=comment.length();
while (ls>0){
int iend = ls;
int ihash = comment.indexOf("#");
if(ihash>0) { iend = ihash; }
// writer.element("br"); writer.end();
// writer.write(comment.substring(0,iend));
if(iend<ls){
comment=comment.substring(ihash+1);
ls=comment.length();
} else {
ls=0;
}
}
}
}
// now try to deal with additional dataset errors...
for (DatasetError de : _dataset.getErrors()){
writer.write("Additional systematic error: ");
if(de.getPlus() != 0.0 || de.getPlus() != 0.0) {
if(de.getPlus().equals(de.getMinus())){
writer.writeRaw("±");
writer.write(" " + de.getPlus());
} else{
writer.write("+" + de.getPlus() + ",-" + de.getMinus() + " ");
}
writer.write(de.getNormType().toSymbol()+ " ");
}
writer.write("(" +de.getComment() + ")");
writer.element("br");writer.end();
}
String lasterror = "";
int ycount = 0;
for (YAxis y : _dataset.getYAxes()){
ycount += 1;
for (AxisError ye : y.getErrors()){
String newerror = "e" + ye.getPlus() + ye.getMinus() + ye.getNormType() + ye.getComment();
if(!newerror.equals(lasterror)){
writer.element("br");writer.end();
writer.write("Additional systematic error(" + ycount + "): ");
if(ye.getPlus() != 0.0 || ye.getPlus() != 0.0) {
if(ye.getPlus().equals(ye.getMinus())){
writer.writeRaw("±");
writer.write(" " + ye.getPlus());
} else{
writer.write("+" + ye.getPlus() + "-" + ye.getMinus() + " ");
}
writer.write(ye.getNormType().toSymbol()+ " ");
}
writer.write("(" +ye.getComment() + ")");
}
lasterror = newerror;
}
}
// writer.end(); //p
// This next sections adds any extra information to the specific table.
// Not ideal because the relative table Id could change but I see no better was.
// Requires two files: description.n and link.n in the specific resource direcotry
String location="";
for (String comment : _dataset.getComments()){
if(comment.startsWith("Location:")) {
location = comment.substring(10).replaceAll(" ","_");
}
}
Long paperid = _dataset.getPaper().getSpiresId();
if(paperid==null){
paperid = _dataset.getPaper().getRedId();
if(paperid==null){
paperid = _dataset.getPaper().getInspireId();
}
}
String descname="/home/hepdata/resource/"+paperid+"/description."+location;
String linkname="/home/hepdata/resource/"+paperid+"/link."+location;
File descfile = new File(descname);
if(descfile.exists()) {
try{
BufferedReader indesc=new BufferedReader(new FileReader(descname));
BufferedReader inlink=new BufferedReader(new FileReader(linkname));
String desc = indesc.readLine();
String link = inlink.readLine();
writer.write(desc);
writer.element("a");
writer.attributes("href","/resource/"+paperid+"/"+link);
writer.write(" table:"+location);
writer.end();
} catch (IOException e){}
}
// Determine the number of axes and points in the dataset
final int nx = _dataset.getXAxes().size(); // number of xaxes in the dataset
final int ny = _dataset.getYAxes().size(); // number of yaxes in the dataset
int npoints = _dataset.getNumPoints();
int binIdMax = _dataset.getMaxPointId();
// Determine the number of axis comments and properties for this dataset
int ncomm = 0;
int nprop = 0;
if (_dataset.getYAxes().size() > 0) {
for(YAxis y : _dataset.getYAxes()){
if(y.getComments().size() > ncomm) {ncomm = y.getComments().size();}
if(y.getProperties().size() > nprop) {nprop = y.getProperties().size();}
}
}
// Begin the actual data table...
writer.element("table");
writer.attributes("class", "dataset");
// y-axis comments (i.e. non-numerical properties
// new version has these added in with the properties - below
int nmatch = 0;
// Next the numerical properties new version
String[][] store = new String[ny][nprop+ncomm];
int numy = -1;
for(YAxis y : _dataset.getYAxes()) {
numy++;
int j=-1;
List <String> storelist = new ArrayList();
// first add the comment elements (strings)
for (String comment : y.getComments()){
if(!comment.startsWith("RE") && comment.indexOf(" IN ") > 0 && comment.indexOf(" : ") > 0){
int len = comment.length();
int ip1 = comment.indexOf(" IN ");
int ip2 = comment.indexOf(" : ");
if(ip2 > ip1) {
String comment2 = comment.substring(0,ip1);
comment2 += comment.substring(ip2,len);
comment2 += comment.substring(ip1+3,ip2).replace("EV","eV");
comment = comment2;
}
else{
String comment2 = comment.substring(0,ip2);
comment2 += comment.substring(ip1,len);
comment2 += comment.substring(ip2+3,ip1).replace("EV","eV");
comment = comment2;
}
}
if(comment.startsWith(". :")){
comment = comment.replace(". :","zzzz :");
}
if(!comment.startsWith("Axis error")){
storelist.add(comment);
} else{
comment=comment.replaceFirst("Axis","Axis("+y.getId().toString()+")");
writer.write(comment);
writer.element("br");
writer.end();
}
}
for (Property property : y.getProperties()) {
j++;
String tempstr = property.getName().toString();
tempstr = tempstr.concat(" : ");
if (property.getFocus() != null){
tempstr = tempstr.concat(property.getFocus().toString());
}
if (property.getLowValue() != null && property.getHighValue() != null &&
property.getLowValue().equals(property.getHighValue())) {
tempstr = tempstr.concat(property.getLowValue().toString());
} else {
if(property.getFocus() != null) { tempstr = tempstr.concat(" ("); }
tempstr = tempstr.concat(property.getLowValue().toString());
tempstr = tempstr.concat("-");
tempstr = tempstr.concat(property.getHighValue().toString());
if(property.getFocus() != null) { tempstr = tempstr.concat(")"); }
}
if (property.getUnit().toString().equals("") || !property.getUnit().isDimensionless()) {
tempstr = tempstr.concat(" ");
tempstr = tempstr.concat(property.getUnit().toString());
}
if(tempstr.startsWith(". :")){
tempstr = tempstr.substring(3);
}
storelist.add(tempstr);
}
Collections.sort(storelist);
int ij=-1;
for (int i=0; i<storelist.size(); i++){
if(i>0 && storelist.get(i).equals(storelist.get(i-1))){ nprop -= 1;}
else{
ij += 1;
store[numy][ij] = storelist.get(i).replaceFirst("sqrts","SQRT(S)").replaceFirst("zzzz :","");
}
}
}
for (int i=0; i<nprop+ncomm; i++){
if(store[0][i] != null){
writer.element("tr");
writer.element("td");
writer.attributes("colspan", nx);
if(i==nprop+ncomm-1) { writer.attributes("class","xqualifier_last qualifier_class");}
else { writer.attributes("class","xqualifier qualifier_class"); }
if(store[0][i].indexOf(" : ")>-1){
writer.write(store[0][i].substring(0,store[0][i].indexOf(" : ")));
}
else{
// writer.write(store[0][i]);
}
// if(store[0][i].startsWith("RE")){
// writer.element("a");
// writer.attributes("href","/h3test/ReactionHelp");
// writer.attributes("onClick","return popitup(this)");
// writer.attributes("title","click for more help on this reaction");
// writer.writeRaw("?=>");
// writer.end();
// }
// else{
// writer.writeRaw(" ");
// }
writer.end();
// this is the actual output
// first check is same across row
Boolean same = true;
for (int nmy=0; nmy<ny-1; nmy++){
if(store[nmy][i] != null && store[nmy+1][i] != null){
if(!store[nmy][i].equals(store[nmy+1][i])){
same = false;
}
} else{
same = false;
}
}
if(same) {
writer.element("th");
writer.attributes("colspan",ny);
if(i<nprop+ncomm-1) { writer.attributes("class","multiple qualifier_class"); }
else { writer.attributes("class","multiple_last qualifier_class"); }
if(store[0][i].indexOf(" : ")>-1) {
writer.write(store[0][i].substring(store[0][i].indexOf(" : ")+2));
}
else{
writer.write(store[0][i]);
}
writer.end();
} else {
int ii=0;
if(store[0][i].indexOf(":")>0) { ii = store[0][i].indexOf(":"); }
for (int nmy=0; nmy<ny; nmy++){
writer.element("th");
if(i<nprop+ncomm-1) { writer.attributes("class","multiple qualifier_class"); }
else { writer.attributes("class","multiple_last qualifier_class"); }
if(store[nmy][i] != null) {
if(nmy>0){ writer.write( store[nmy][i].substring(ii+1)); }
// if(nmy<0){ writer.write( store[nmy][i].substring(ii+1)); }
else {
if(store[nmy][i].indexOf(" : ")>-1) {
writer.write( store[nmy][i].substring(store[nmy][i].indexOf(" : ")+2));
}
else{
writer.write( store[nmy][i]);
}
}
}
writer.end();
}
}
writer.end(); //tr
}
}
// Headers
writer.element("tr");
writer.attributes("class", "xyheaders");
// X headers
for (XAxis x : _dataset.getXAxes()) {
writer.element("th");
writer.attributes("class", "xheader qualifier_class");
writer.write(x.getHeader());
writer.end(); //th
}
// Y headers (trying to merge if possible)
String yhead = "";
if (_dataset.getYAxes().size() > 0) {
yhead = _dataset.getYAxis(1).getHeader();
}
nmatch = 0;
for (YAxis y : _dataset.getYAxes()){
if ( y.getHeader().equals(yhead) ) nmatch += 1;
}
if (nmatch == ny) {
writer.element("th");
writer.attributes("class", "yheader observable_class");
writer.attributes("colspan", ny);
writer.write(yhead);
writer.end(); //th
} else {
for (YAxis y : _dataset.getYAxes()) {
writer.element("th");
writer.attributes("class", "yheader observable_class");
writer.write(y.getHeader());
writer.end(); //th
}
}
writer.end(); //tr
///////////////////////////////////////////////////////////////////////////////////////////
if(_dataset.getNumPoints() == 0){
writer.element("th");
writer.attributes("colspan",ny+nx);
writer.attributes("align", "center");
writer.write("No data is encoded for this table");
writer.end();
}
// writer.element("tr");
// writer.element("td");
// writer.attributes("colspan",nx+ny);
// writer.end();
// writer.element("img");
// writer.attributes("src",button_hide.toClientURL());
// String hide = button_hide.toClientURL();
// String expand = button_expand.toClientURL();
// writer.attributes("onclick","ExpandClicked(this,'"+expand+"','"+hide+"');");
// writer.end();
// writer.end();
// if (getFormat().equals("full") && _dataset.getNumPoints() != 0) {
if ( _dataset.getNumPoints() != 0) {
// Finally the numbers themselves
int sumzero = 0;
int allzero = 0;
for (int ip = 1 ; ip <= npoints; ip++) {
writer.element("tr");
// First the xaxes
for (int ix = 1 ; ix <= nx; ix++) {
XAxis x = _dataset.getXAxis(ix);
// Work out x-axis formatting
/// @todo Do this formatting stuff properly with SignificantFigures as for y-values
int lwidth = 0;
int hwidth = 0;
int fwidth = 0;
// Format as "<focus> (bin: <low>--<high>)" if showmean is true ==
// at least one bin has a focus which significantly differs from the mean
// ..force it to be true so that we always output the mean
boolean asymmfocus = false;
boolean haswidth = false;
for (Bin b : x.getBins()) {
if(b.getDescription() !=null && b.getFocus()==null) { plotit=false; }
if (b.getLowValue() != null && b.getHighValue() != null && b.getFocus() != null) {
double diff = b.getFocus() - (b.getLowValue() + b.getHighValue()) / 2.0;
if (Math.abs(diff/b.getFocus()) > 1E-6) {
asymmfocus = true;
}
}
if (b.getLowValue() != null && b.getHighValue() != null){
double diff = b.getHighValue() - b.getLowValue();
double mean = (b.getHighValue() + b.getLowValue())/2.0;
if(Math.abs(diff/mean) > 1E-6){
haswidth = true;
}
}
if (b.getLowValue() != null && b.getLowValue().toString().length() > lwidth) {
lwidth = b.getLowValue().toString().length();
}
if (b.getHighValue() != null && b.getHighValue().toString().length() > hwidth) {
hwidth = b.getHighValue().toString().length();
}
if (b.getFocus() != null && b.getFocus().toString().length() > fwidth) {
fwidth = b.getFocus().toString().length();
}
}
Double f = null;
Double high = null;
Double low = null;
Bin b = x.getBin(ip);
writer.element("td");
if(ip == npoints) { writer.attributes("class", "xval_last"); }
else { writer.attributes("class", "xval"); }
if (b != null) {
if (b.getDescription() == null){
if (b.getRelation() == Relation.EQUALS) {
low = b.getLowValue();
high = b.getHighValue();
f = b.getFocus();
int lsd = 0;
int msd = 0;
if(f != null) {
SignificantFigures valx = new SignificantFigures(f);
lsd = valx.getLSD();
msd = valx.getMSD();
- if(msd == 0) msd = 1;
+ if(msd <= 0) msd = 1;
if(f.toString().indexOf("9999999") > 0) {
int pos1 = f.toString().indexOf("9999999");
int pos2 = f.toString().indexOf(".");
lsd = pos2-pos1+1;
}
else if(f.toString().indexOf("0000000") > 0) {
int pos1 = f.toString().indexOf("0000000");
int pos2 = f.toString().indexOf(".");
lsd = pos2-pos1+1;
}
if(b.getFocusLength() != null){
lsd = -b.getFocusLength();
}
}
String f_val = Formats.forms(f,fwidth, msd,-lsd);
if(lsd == -1 && f_val.endsWith(".0") && b.getFocusLength() == null){ f_val = f_val.substring(0,f_val.length()-2); }
if (low != null && high != null) {
SignificantFigures vall = new SignificantFigures(low);
lsd = vall.getLSD();
msd = vall.getMSD();
- if(msd == 0) msd = 1;
+ if(msd <= 0) msd = 1;
if(low.toString().indexOf("9999999") > 0) {
int pos1 = low.toString().indexOf("9999999");
int pos2 = low.toString().indexOf(".");
lsd = pos2-pos1+1;
}
else if(low.toString().indexOf("0000000") > 0) {
int pos1 = low.toString().indexOf("0000000");
int pos2 = low.toString().indexOf(".");
lsd = pos2-pos1+1;
}
if(b.getLowValueLength() != null){
lsd = -b.getLowValueLength();
}
String f_low = Formats.forms(low,lwidth,msd,-lsd);
SignificantFigures valh = new SignificantFigures(high);
lsd = valh.getLSD();
msd = valh.getMSD();
- if(msd == 0) msd = 1;
+ if(msd <= 0) msd = 1;
if(high.toString().indexOf("9999999") > 0) {
int pos1 = high.toString().indexOf("9999999");
int pos2 = high.toString().indexOf(".");
lsd = pos2-pos1+1;
}
else if(high.toString().indexOf("0000000") > 0) {
int pos1 = high.toString().indexOf("0000000");
int pos2 = high.toString().indexOf(".");
lsd = pos2-pos1+1;
}
if(b.getHighValueLength() != null){
lsd = -b.getHighValueLength();
}
String f_high = Formats.forms(high,hwidth,msd,-lsd);
Double width = high - low;
if (f != null && asymmfocus && haswidth) {
writer.writeRaw(f_val);
writer.writeRaw(" (bin: ");
writer.writeRaw(f_low + " – " + f_high);
writer.writeRaw(")");
} else if (f==0.0 && haswidth==false || (f != null && Math.abs(width/f) < 1E-6)) {
writer.write(f_val);
} else {
writer.writeRaw(f_low + " – " + f_high);
}
} else {
writer.write(f_val);
}
} else {
writer.write(b.getRelation().toString());
if (b.getLowValue() != null) {
writer.write(b.getLowValue().toString());
} else if (b.getHighValue() != null) {
writer.write(b.getHighValue().toString());
}
}
} else {
writer.write(b.getDescription());
}
}
writer.end(); //td
}
// Now the y-axes
for (int iy = 1; iy <= ny; ++iy) {
YAxis y = _dataset.getYAxis(iy);
Point pt2 = y.getPoint(ip);
writer.element("td");
if(ip == npoints) { writer.attributes("class", "yval_last"); }
else { writer.attributes("class", "yval"); }
try {
/// DON'T MODIFY ANY OF THIS AT THE MOMENT: I'M MOVING THE FORMATTING TO AN EXTERNAL CLASS!
if (pt2.getRelation() != Relation.EQUALS) {
writer.write(pt2.getRelation().toString());
}
if (pt2.getDescription() != null) {
plotit=false;
writer.write(pt2.getDescription().toString());
}
else {
SignificantFigures val = new SignificantFigures(pt2.getValue());
int lsd = val.getLSD();
allzero += 1;
if (pt2.getValue().toString().endsWith(".0")) sumzero += 1;
if (pt2.getValue().toString().endsWith("0") || pt2.getValue().toString().indexOf("0E") > 0) {
lsd += 1;
}
if(pt2.getValueLength() != null && pt2.getValueLength() > 0) {
lsd = -pt2.getValueLength();
}
else{
if (pt2.getRelation() == Relation.EQUALS) {
for (PointError e : pt2.getErrors()) {
int lsd1 = 0;
int lsd2 = 0;
if (e.getNormType() != ErrorNorm.PCT) {
SignificantFigures vale1 = new SignificantFigures(e.getPlus());
lsd1 = vale1.getLSD();
if(!e.getPlus().toString().endsWith("0") && e.getPlus().toString().indexOf("0E") <= 0){
// if(e.getPlus().toString().indexOf("0E") > 0){ lsd1 -= 1; }
lsd = Math.min(lsd, lsd1);
}
SignificantFigures vale2 = new SignificantFigures(e.getMinus());
lsd2 = vale2.getLSD();
if(!e.getMinus().toString().endsWith("0") && e.getMinus().toString().indexOf("0E") <= 0){
// if(e.getMinus().toString().indexOf("0E") > 0){ lsd2 -= 1; }
lsd = Math.min(lsd, lsd2);
}
}
}
}
}
int msd = val.getMSD();
if (msd <= 0) msd = 1;
// ` if(allzero == sumzero) lsd = 0;
if (verbatim) { writer.write(pt2.getValue().toString().replaceAll("E","e")); }
else{ writer.write(Formats.forms(pt2.getValue(),msd, -lsd)); }
if (pt2.getRelation() == Relation.EQUALS) {
for (PointError e : pt2.getErrors()) {
String stype = e.getSourceType().toShortString();
SignificantFigures vale = null;
if (e.getPlusLength() != null) { lsd = -e.getPlusLength(); }
if (e.isSymmetric() || e.hasZeroSize()) {
vale = new SignificantFigures(e.getPlus());
writer.writeRaw(" ± "); // chosen to allow breaks *before* the +- sign only
if (e.getNormType() == ErrorNorm.PCT) { lsd = vale.getLSD(); }
msd = vale.getMSD();
if (msd <= 0) msd = 1;
if (verbatim) { writer.write(e.getPlus().toString().replaceAll("E","e")); }
else {writer.write(Formats.forms(e.getPlus(), msd, -lsd)); }
writer.write(e.getNormType().toSymbol());
} else if (e.isSymmetricReversed()) {
vale = new SignificantFigures(e.getPlus());
writer.writeRaw(" ∓ "); // chosen to allow breaks *before* the +- sign only
if (e.getNormType() == ErrorNorm.PCT) { lsd = vale.getLSD(); }
msd = vale.getMSD();
if (msd <= 0) msd = 1;
if (verbatim) { writer.write(e.getMinus().toString().replaceAll("E","e")); }
writer.write(Formats.forms(e.getMinus(), msd, -lsd));
writer.write(e.getNormType().toSymbol());
} else {
vale = new SignificantFigures(e.getPlus());
if (e.getPlus()<0.0) { writer.write(""); }
else { writer.write(" +"); }
if (e.getNormType() == ErrorNorm.PCT) { lsd = vale.getLSD(); }
msd = vale.getMSD();
if (msd <= 0) msd = 1;
if (verbatim) { writer.write(e.getPlus().toString().replaceAll("E","e")); }
else { writer.write(Formats.forms(e.getPlus(), msd, -lsd)); }
writer.write(e.getNormType().toSymbol());
vale = new SignificantFigures(e.getMinus());
if (e.getMinus()<0.0) { writer.write(","); }
else if (e.getMinus()>0.0) { writer.write(",+"); }
else { writer.write(",-"); }
if (e.getNormType() == ErrorNorm.PCT) { lsd = vale.getLSD(); }
msd = vale.getMSD();
if (msd <= 0) msd = 1;
if (verbatim) { writer.write(e.getMinus().toString().replaceAll("E","e")); }
else{ writer.write(Formats.forms(e.getMinus(), msd, -lsd)); }
writer.write(e.getNormType().toSymbol());
}
if(!stype.equals("?")) { writer.writeRaw(" (" + stype);
if(!e.getComment().equals("")) {
writer.write("," + e.getComment());
}
writer.writeRaw(") ");
}
}
}
for (PointError e : pt2.getErrors()){
if(!e.getComment().equals("")&&!e.getSourceType().toShortString().equals("sys")) { writer.write(" (" + e.getComment() + ")"); }
}
}
}
catch (Exception e) {
writer.writeRaw("–");
}
writer.end(); //td
}
writer.end(); //tr
}
// Alternative formats (link from table list)
/// @todo Move to component template or separate component
if(plotit==true){
writer.element("tr");
writer.attributes("class", "altformats");
for (int ix = 1; ix <= nx; ix++) {
writer.element("td");
writer.writeRaw(" ");
writer.end(); //td
}
String baseurl = _reqGlobals.getRequest().getContextPath();
String urlid = "";
if(_dataset.getPaper().getInspireId() != null) { urlid = "/ins"+_dataset.getPaper().getInspireId(); }
else if(_dataset.getPaper().getSpiresId() != null) { urlid = "/irn"+_dataset.getPaper().getSpiresId(); }
else if(_dataset.getPaper().getCdsId() != null) { urlid = "/cds"+_dataset.getPaper().getCdsId(); }
else if(_dataset.getPaper().getRedId() != null) { urlid = "/red"+_dataset.getPaper().getRedId() ;}
else { urlid = "/p"+_dataset.getPaper().getId(); }
String urlparts = ""
+ urlid
+ "/d" + _dataset.getId();
for (int iy = 1; iy <= ny; iy++) {
writer.element("td");
// // Numbers link
// writer.element("a");
// writer.attributes("href", baseurl + "/view:plain?" + urlparts + "&x=1&y=" + iy);
// writer.attributes("title", "View the contents of this axis as plain text");
// writer.write("Numbers");
// writer.end();
// writer.element("br"); writer.end();
// Plot link
Double yratio = _dataset.getYAxis(iy).getMaxValue()/_dataset.getYAxis(iy).getMinValue();
if(nx==1){
writer.element("a");
if(_dataset.getYAxis(iy).getMinValue()>0.0 && yratio > 100.0){
writer.attributes("href", baseurl + "/plot" + urlparts + "/x01/ylog" + iy);
}
else{
writer.attributes("href", baseurl + "/plot" + urlparts + "/x01/y" + iy);
}
writer.attributes("title", "Display this table in graphical form");
writer.write("Plot");
writer.end();
writer.element("br"); writer.end();
}
else {
for (int nxx=1; nxx<=nx; nxx++){
writer.element("a");
if(_dataset.getYAxis(iy).getMinValue()>0.0 && yratio > 100.0){
writer.attributes("href", baseurl + "/plot" + urlparts + "/x0"+nxx+"/ylog" + iy);
}
else {
writer.attributes("href", baseurl + "/plot" + urlparts + "/x0"+nxx+"/y" + iy);
}
writer.attributes("title", "Display this table in graphical form using xaxis "+nxx);
writer.write("Plot v x"+nxx);
writer.end();
writer.element("br"); writer.end();
}
}
// Plot selection link
writer.element("a");
writer.attributes("href", baseurl + "/saveplot?string=" + getSearchString() + "&plot=" + _dataset.getPaper().getId() + "ds" + _dataset.getId() + "ya" + iy);
writer.attributes("title", "Add this table to the list for combined plotting");
writer.write("SelectPlot");
writer.end();
writer.end(); //td
}
writer.end(); //tr
}
} // end "full format only"
writer.end(); //table
// writer.element("input");
// if(!getFormat().equals("full")) { writer.attributes("type", "hidden");}
// writer.attributes("name", "string");
// writer.attributes("value", getSearchString());
// writer.end();
//
}
@Parameter(name="dataset")
private Dataset _dataset;
public String forms(Double value) {
int width = 20;
return this.forms(value,width);
}
public String forms(Double value, int width) {
int position = width/2;
return this.forms(value,width,position);
}
public String forms(Double value, int width, int position) {
String form = "##############.###############################";
DecimalFormat myFormatter = new DecimalFormat(form);
String sval = "Cannot format this!!";
if( value instanceof Double ){
sval = myFormatter.format(value);
}
String sout = " ";
for (int i = 1 ; i < width; ++i) {
sout = sout.concat(" ");
}
int lenval = sval.length();
int dotpos = sval.indexOf(".");
String before = sval;
String after = "";
if (dotpos >= 0) {
before = sval.substring(0, dotpos);
after = sval.substring(dotpos+1, lenval);
}
int lenbefore = before.length();
int lenafter = after.length();
int lenout = sout.length();
StringBuffer bout = new StringBuffer(sout);
int lstart = 1;
int l1 = lstart + lenbefore;
int l2 = l1;
int l3 = l2 + 1;
int l4 = l3 + lenafter;
bout.replace(lstart, l1,before);
bout.replace(l2, l2, ".");
bout.replace(l3, l4, after);
sout = bout.toString();
return sout;
}
private String getSearchString() {
return _reqGlobals.getRequest().getParameter("string");
}
}