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# Set the following two variables correctly
UTESTPP_DIR = /home/igv/Code/UnitTest++
FFTW_LIBDIR = /usr/local/lib
OFILES_COMMON = test_utils.o
OTESTS_FAST = test_ArrayND.o test_OrthoPoly1D.o test_OrthoPolyND.o \
test_Functors.o test_interpolation.o test_LocalPolyFilterND.o \
test_Distributions1D.o test_InterpolatedDistribution1D.o \
test_EmpiricalCopula.o test_BoxNDScanner.o \
test_QuadraticOrthoPolyND.o test_LocalLogisticRegression.o \
test_randomPermutation.o test_gegenbauerSeriesSum.o \
test_GaussHermiteQuadrature.o test_SpecialFunctions.o \
test_GaussLegendreQuadrature.o test_WeightedStatAccumulator.o \
test_RandomSequenceRepeater.o test_logLikelihoodPeak.o \
test_legendreSeriesSum.o test_solveCubic.o test_HistoND.o \
test_SampleAccumulator.o test_GridInterpolatedDistribution.o \
test_GridAxis.o test_Matrix.o test_StatUtils.o \
test_amiseOptimalBandwidth.o test_OrderedPointND.o \
test_CompositeDistributionND.o test_CompositeBuilder.o \
test_ArchiveIO.o test_Ntuples.o test_LocalQuantileRegression.o \
test_rectangleQuadrature.o test_RegularSampler1D.o \
test_Instantiations.o test_chebyshevSeriesSum.o \
test_dawsonIntegral.o test_NMCombinationSequencer.o \
test_CrossCovarianceAccumulator.o test_StatAccumulatorPair.o \
test_findPeak2D.o test_StatAccumulatorArr.o test_SeriesCGF1D.o \
test_goldenSectionSearch.o test_empiricalQuantile.o \
test_StatAccumulator.o test_binomialCoefficient.o \
test_CircularMapper1d.o test_LinInterpolatedTableND.o \
test_StorableMultivariateFunctor.o test_NeymanPearsonWindow1D.o \
test_hermiteSeriesSum.o test_hermiteSeriesSumPhys.o \
test_DiscreteDistributions1D.o test_LocalPolyFilter1D.o \
test_definiteIntegrals.o test_ExpMapper1d.o test_MathUtils.o \
test_MemoizingSymbetaFilterProvider.o test_ResponseMatrix.o \
test_gaussianResponseMatrix.o test_RectangleQuadrature1D.o \
WeightedTestAccumulator.o TestAccumulator.o test_histoUtils.o \
test_LocalMultiFilter1D.o test_InterpolatedCompositeBuilder.o \
test_DensityAveScanND.o test_Distro1DBuilder.o \
test_findRootNewtonRaphson.o test_cumulantUncertainties.o \
test_ClassicalOrthoPolys1D.o test_ContOrthoPoly1D.o \
test_findRootUsingBisections.o test_orthoPoly1DVProducts.o \
test_truncatedInverseSqrt.o test_FejerQuadrature.o \
test_matrixIndexPairs.o test_KDE1DKernel.o test_Interval.o \
test_likelihoodStatisticCumulants.o test_Uncertainties.o \
test_DistributionsND.o EdgeworthSeries1DOld.o test_OSDE1D.o \
test_SequentialPolyFilterND.o test_HeatEq1DNeumannBoundary.o \
test_ScalableClassicalOrthoPoly1D.o LogLogQuadratic1D.o \
test_Poly1D.o
OTESTS_COMPREHENSIVE = test_ArrayND_cmh.o test_DiscreteBernstein.o \
test_KDTree.o test_rescanArray_cmh.o test_lorpeMise1D.o \
test_LOrPE1DSymbetaKernel.o
# OPTIMIZE = -std=c++11 -g -ggdb -O0
OPTIMIZE = -std=c++11 -O3
INCLUDES = -I. -I.. -I$(UTESTPP_DIR)/src -I$(FFTW_LIBDIR)/../include
CPPFLAGS = $(OPTIMIZE) $(INCLUDES) -Wall -W -Werror -Wno-unused-parameter
LIBS = -L../npstat/.libs -lnpstat -L$(UTESTPP_DIR) -lUnitTest++ \
-L$(FFTW_LIBDIR) -lfftw3 -llapack -lblas \
-L/usr/local/lib -lrk -lgeners -lbz2 -lz -lkstest -lm
%.o : %.cc
g++ -c $(CPPFLAGS) -fPIC -MD $< -o $@
@sed -i 's,\($*\.o\)[:]*\(.*\),$@: $$\(wildcard\2\)\n\1:\2,g' $*.d
# Change the "all" target below to suit your development needs.
# Useful targets which can be included are:
#
# fast fast_run
# comprehensive comprehensive_run
# regression regression_run
#
# The tests inside the "fast" target are a subset of tests from the
# "comprehensive" target
all: fast fast_run
# all: fast regression fast_run regression_run
# all: comprehensive comprehensive_run regression regression_run
fast: test_main.o $(OTESTS_FAST) $(OFILES_COMMON)
rm -f $@
g++ $(OPTIMIZE) -fPIC -o $@ $^ $(LIBS)
fast_run: fast
./fast
comprehensive: test_main.o $(OTESTS_FAST) \
$(OTESTS_COMPREHENSIVE) $(OFILES_COMMON)
rm -f $@
g++ $(OPTIMIZE) -fPIC -o $@ $^ $(LIBS)
comprehensive_run: comprehensive
./comprehensive
regression:
regression_run: regression
@ echo Running regression tests.
PROGRAMS = kdtree_speed.cc quantileBinFromCdf.cc incompleteGamma.cc \
convertToSpherical.cc printPermutations.cc showIOTraits.cc \
hugeNtuple.cc hugeNtupleRead.cc histoStdev.cc effectiveDim.cc \
buildInterpolatedCheck.cc legendreRoots.cc jacobiPolyStats.cc \
jacobiVProducts.cc jacobiEpsTest.cc gauss2DRandom.cc besselK.cc
PROGRAMS += cpp11Random.cc
PROGRAMS += failingTest.cc
BINARIES = $(PROGRAMS:.cc=)
binaries: $(BINARIES)
$(BINARIES): % : %.o $(OFILES_COMMON); g++ $(OPTIMIZE) -fPIC -o $@ $^ $(LIBS)
clean:
rm -f fast comprehensive $(BINARIES) \
*.out core.* *.o *.d *~ *.gsbd *.gsbmf
-include test_main.d
-include $(OFILES_COMMON:.o=.d)
-include $(OTESTS_FAST:.o=.d)
-include $(OTESTS_COMPREHENSIVE:.o=.d)
-include $(PROGRAMS:.cc=.d)

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