Utils.py
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Utils.py
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	import os
	def mkoutdir(outdir):
	"Function to make output directories"
	if not os.path.exists(outdir):
	try:
	os.makedirs(outdir)
	except:
	msg = "Can't make output directory '%s'" % outdir
	raise Exception(msg)
	if not os.access(outdir, os.W_OK):
	msg = "Can't write to output directory '%s'" % outdir
	raise Exception(msg)

	def writeOutputHier(output, h):
	"Choose output file name and dir"
	hparts = h.strip("/").split("/")
	ana = "ANALYSIS"
	# if opts.HIER_OUTPUT:
	outdir = os.path.join('.', ana)
	# ana = "_".join(hparts[:-1]) if len(hparts) > 1 else "ANALYSIS"
	# outdir = os.path.join(opts.OUTDIR, ana)
	# outfile = '%s.dat' % hparts[-1]
	# else:
	# outdir = opts.OUTDIR
	# outfile = '%s.dat' % "_".join(hparts)
	# # outdir = opts.OUTDIR
	# # outfile=output
	mkoutdir(outdir)
	outfilepath = os.path.join(outdir, output)
	f = open(outfilepath, 'w')
	for item in output:
	f.write(str(item) + "\n")
	#f.write(output)
	f.close()

	def writeOutput(output, h):
	mkoutdir("ANALYSIS")
	f = open("./ANALYSIS/"+h, 'w')
	for item in output:
	f.write(str(item) + "\n")
	f.close()