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Index: tags/siscone-3.0.4/README
===================================================================
--- tags/siscone-3.0.4/README (revision 0)
+++ tags/siscone-3.0.4/README (revision 420)
@@ -0,0 +1,5 @@
+See html docmentation in doc/html or developer's doxygen documentation
+in doc/devel/html (you may need to run doxygen for the latter to be
+present).
+
+For installation instructions see the INSTALL file.
Index: tags/siscone-3.0.4/config.h.in
===================================================================
--- tags/siscone-3.0.4/config.h.in (revision 0)
+++ tags/siscone-3.0.4/config.h.in (revision 420)
@@ -0,0 +1,67 @@
+/* config.h.in. Generated from configure.ac by autoheader. */
+
+/* Define to 1 if you have the <dlfcn.h> header file. */
+#undef HAVE_DLFCN_H
+
+/* Define to 1 if you have the <inttypes.h> header file. */
+#undef HAVE_INTTYPES_H
+
+/* Define to 1 if you have the `m' library (-lm). */
+#undef HAVE_LIBM
+
+/* Define to 1 if you have the <memory.h> header file. */
+#undef HAVE_MEMORY_H
+
+/* Define to 1 if you have the <stdint.h> header file. */
+#undef HAVE_STDINT_H
+
+/* Define to 1 if you have the <stdlib.h> header file. */
+#undef HAVE_STDLIB_H
+
+/* Define to 1 if you have the <strings.h> header file. */
+#undef HAVE_STRINGS_H
+
+/* Define to 1 if you have the <string.h> header file. */
+#undef HAVE_STRING_H
+
+/* Define to 1 if you have the <sys/stat.h> header file. */
+#undef HAVE_SYS_STAT_H
+
+/* Define to 1 if you have the <sys/types.h> header file. */
+#undef HAVE_SYS_TYPES_H
+
+/* Define to 1 if you have the <unistd.h> header file. */
+#undef HAVE_UNISTD_H
+
+/* Define to the sub-directory where libtool stores uninstalled libraries. */
+#undef LT_OBJDIR
+
+/* Name of package */
+#undef PACKAGE
+
+/* Define to the address where bug reports for this package should be sent. */
+#undef PACKAGE_BUGREPORT
+
+/* Define to the full name of this package. */
+#undef PACKAGE_NAME
+
+/* Define to the full name and version of this package. */
+#undef PACKAGE_STRING
+
+/* Define to the one symbol short name of this package. */
+#undef PACKAGE_TARNAME
+
+/* Define to the home page for this package. */
+#undef PACKAGE_URL
+
+/* Define to the version of this package. */
+#undef PACKAGE_VERSION
+
+/* Define to 1 if you have the ANSI C header files. */
+#undef STDC_HEADERS
+
+/* use unique_ptr instead of auto_ptr */
+#undef USES_UNIQUE_PTR_AS_AUTO_PTR
+
+/* Version number of package */
+#undef VERSION
Index: tags/siscone-3.0.4/BUGS
===================================================================
--- tags/siscone-3.0.4/BUGS (revision 0)
+++ tags/siscone-3.0.4/BUGS (revision 420)
@@ -0,0 +1,3 @@
+//!\file BUGS
+//!\bug No critical bugs are known at present time.
+//!\bug Please send bug reports to soyez@fastjet.fr or gavin.salam@cern.ch
Index: tags/siscone-3.0.4/siscone/momentum.h
===================================================================
--- tags/siscone-3.0.4/siscone/momentum.h (revision 0)
+++ tags/siscone-3.0.4/siscone/momentum.h (revision 420)
@@ -0,0 +1,157 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: momentum.h //
+// Description: header file for 4-momentum class Cmomentum //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __VECTOR_H__
+#define __VECTOR_H__
+
+#include <vector>
+#include <math.h>
+#include "reference.h"
+#include "geom_2d.h"
+#include "defines.h"
+
+namespace siscone{
+
+/**
+ * \class Cmomentum
+ * \brief base class for dynamic coordinates management
+ *
+ * This class contains the information for particle or group of
+ * particles management.
+ * It includes all Lorentz properties as well as tools for summing them.
+ * Note: 'sums' over phi angles are indeed averages. This allows to
+ * deal with periodicity at each step
+ */
+class Cmomentum{
+ public:
+ /// default ctor
+ Cmomentum();
+
+ /// ctor with initialisation
+ Cmomentum(double _px, double _py, double _pz, double _E);
+
+ /// ctor with detailed initialisation
+ Cmomentum(double _eta, double _phi, Creference _ref);
+
+ /// default dtor
+ ~Cmomentum();
+
+ /// computes pT
+ inline double perp() const {return sqrt(perp2());}
+
+ /// computes pT^2
+ inline double perp2() const {return px*px+py*py;}
+
+ /// computes m
+ inline double mass() const {return sqrt(mass2());}
+
+ /// computes m^2
+ inline double mass2() const {return perpmass2()-perp2();}
+
+ /// transverse mass, mt = sqrt(pt^2+m^2) = sqrt(E^2 - pz^2)
+ inline double perpmass() const {return sqrt((E-pz)*(E+pz));}
+
+ /// transverse mass squared, mt^2 = pt^2+m^2 = E^2 - pz^2
+ inline double perpmass2() const {return (E-pz)*(E+pz);}
+
+ /// computes transverse energy
+ inline double Et() const {return E/sqrt(1.0+pz*pz/perp2());}
+
+ /// computes transverse energy (squared)
+ inline double Et2() const {return E*E/(1.0+pz*pz/perp2());}
+
+ /// assignment of vectors
+ Cmomentum& operator = (const Cmomentum &v);
+
+ /// addition of vectors
+ /// !!! WARNING !!! no updating of eta and phi !!!
+ const Cmomentum operator + (const Cmomentum &v);
+
+ /// incrementation of vectors
+ /// !!! WARNING !!! no updating of eta and phi !!!
+ Cmomentum& operator += (const Cmomentum &v);
+
+ /// decrementation of vectors
+ /// !!! WARNING !!! no updating of eta and phi !!!
+ Cmomentum& operator -= (const Cmomentum &v);
+
+ /// build eta-phi from 4-momentum info
+ /// !!! WARNING !!!
+ /// !!! computing eta and phi is time-consuming !!!
+ /// !!! use this whenever you need eta or phi !!!
+ /// !!! automatically called for single-particle !!!
+ void build_etaphi();
+
+ double px; ///< x-momentum
+ double py; ///< y-momentum
+ double pz; ///< z-momentum
+ double E; ///< energy
+
+ double eta; ///< particle pseudo-rapidity
+ double phi; ///< particle azimuthal angle
+ int parent_index; ///< particle number in the parent list
+ int index; ///< internal particle number
+
+ //////////////////////////////////////////////
+ // the following part is used for checksums //
+ //////////////////////////////////////////////
+ Creference ref; ///< reference number for the vector
+};
+
+/// ordering of two vectors
+/// this is by default done w.r.t. their references
+bool operator < (const Cmomentum &v1, const Cmomentum &v2);
+
+/// ordering of vectors in eta (e.g. used in collinear tests)
+bool momentum_eta_less(const Cmomentum &v1, const Cmomentum &v2);
+
+/// ordering of vectors in pt
+bool momentum_pt_less(const Cmomentum &v1, const Cmomentum &v2);
+
+
+//////////////////////////
+// some handy utilities //
+//////////////////////////
+
+/// get distance between to eta-phi points
+/// \param eta eta coordinate of first point
+/// \param phi phi coordinate of first point
+/// \param v vector defining the second point
+inline double get_distance(double eta, double phi, Cmomentum *v){
+ double dx, dy;
+
+ dx = eta - v->eta;
+ dy = fabs(phi - v->phi);
+ if (dy>M_PI)
+ dy -= twopi;
+
+ return dx*dx+dy*dy;
+}
+
+}
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/momentum.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/siscone.h
===================================================================
--- tags/siscone-3.0.4/siscone/siscone.h (revision 0)
+++ tags/siscone-3.0.4/siscone/siscone.h (revision 420)
@@ -0,0 +1,176 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: siscone.h //
+// Description: header file for the main SISCone class //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SISCONE_H__
+#define __SISCONE_H__
+
+#include "protocones.h"
+#include "split_merge.h"
+
+namespace siscone{
+
+/**
+ * \class Csiscone
+ * final class: gather everything to compute the jet contents.
+ *
+ * This is the class user should use.
+ * It computes the jet contents of a list of particles
+ * given a cone radius and a threshold for splitting/merging.
+ *
+ * After the call to 'perform', the vector jets is filled with
+ * the jets found. the 'contents' field of each jets contains
+ * the indices of the particles included in that jet.
+ */
+class Csiscone : public Cstable_cones, public Csplit_merge{
+ public:
+ /// default ctor
+ Csiscone();
+
+ /// default dtor
+ ~Csiscone();
+
+ /**
+ * compute the jets from a given particle set.
+ * We are doing multiple passes such pass n_pass looks for jets among
+ * all particles not put into jets during previous passes.
+ * By default the number of passes is infinite (0).
+ * \param _particles list of particles
+ * \param _radius cone radius
+ * \param _f shared energy threshold for splitting&merging
+ * \param _n_pass_max maximum number of passes (0=full search)
+ * \param _ptmin minimum pT of the protojets
+ * \param _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: SM_pt leads to IR unsafety for some events with momentum conservation.
+ * SM_Et is IR safe but not boost invariant and not implemented(!)
+ * SM_mt is IR safe for hadronic events, but not for decays of two
+ * back-to-back particles of identical mass
+ * SM_pttilde
+ * is always IR safe, and also boost invariant (default)
+ *
+ * \return the number of jets found.
+ */
+ int compute_jets(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max=0, double _ptmin=0.0,
+ Esplit_merge_scale _split_merge_scale=SM_pttilde);
+
+ /**
+ * compute the jets from a given particle set.
+ * We are doing multiple passes such pass n_pass looks for jets among
+ * all particles not put into jets during previous passes.
+ * By default the number of passes is infinite (0).
+ * \param _particles list of particles
+ * \param _radius cone radius
+ * \param _n_pass_max maximum number of passes (0=full search)
+ * \param _ptmin minimum pT of the protojets
+ * \param _ordering_scale the ordering scale to decide which stable
+ * cone is removed
+ *
+ * Note that the Csplit_merge::SM_var2_hardest_cut_off cut is not
+ * used in the progressive removal variant.
+ *
+ * \return the number of jets found.
+ */
+ int compute_jets_progressive_removal(std::vector<Cmomentum> &_particles, double _radius,
+ int _n_pass_max=0, double _ptmin=0.0,
+ Esplit_merge_scale _ordering_scale=SM_pttilde);
+
+ /**
+ * recompute the jets with a different overlap parameter.
+ * we use the same particles and R as in the preceeding call.
+ * \param _f shared energy threshold for splitting&merging
+ * \param _ptmin minimum pT of the protojets
+ * \param _split_merge_scale the scale choice for the split-merge procedure
+ * split--merge variable
+ * NOTE: using pt leads to IR unsafety for some events with momentum
+ * conservation. So we strongly advise not to change the default
+ * value.
+ * \return the number of jets found, -1 if recomputation not allowed.
+ */
+ int recompute_jets(double _f, double _ptmin = 0.0,
+ Esplit_merge_scale _split_merge_scale=SM_pttilde);
+
+ /// list of protocones found pass-by-pass (not filled by compute_jets_progressive_removal)
+ std::vector<std::vector<Cmomentum> > protocones_list;
+
+ // random number initialisation
+ static bool init_done; ///< check random generator initialisation
+
+#ifdef DEBUG_STABLE_CONES
+ int nb_hash_cones_total, nb_hash_occupied_total;
+#endif
+
+ /**
+ * A call to this function modifies the stream
+ * used to print banners (by default cout).
+ *
+ * Please note that if you distribute 3rd party code
+ * that links with SISCone, that 3rd party code must not
+ * use this call turn off the printing of thw banner
+ * by default. This requirement reflects the spirit of
+ * clause 2c of the GNU Public License (v2), under which
+ * SISCone is distributed.
+ */
+ static void set_banner_stream(std::ostream * ostr) {_banner_ostr = ostr;}
+
+ /**
+ * returns a pointer to the stream to be used to print banners
+ * (cout by default)
+ */
+ static std::ostream * banner_stream() {return _banner_ostr;}
+
+ private:
+ bool rerun_allowed; ///< is recompute_jets allowed ?
+ static std::ostream * _banner_ostr; ///< stream to use for banners
+
+ /// ensure things are initialised
+ void _initialise_if_needed();
+
+};
+
+
+// finally, a bunch of functions to access to
+// basic information (package name, version)
+//---------------------------------------------
+
+/**
+ * return SISCone package name.
+ * This is nothing but "SISCone", it is a replacement to the
+ * SISCONE_PACKAGE_NAME string defined in config.h and which is not
+ * guaranteed to be public.
+ * \return the SISCone name as a string
+ */
+std::string siscone_package_name();
+
+/**
+ * return SISCone version number.
+ * \return a string of the form "X.Y.Z" with possible additional tag
+ * (alpha, beta, devel) to mention stability status
+ */
+std::string siscone_version();
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/siscone.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/area.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/area.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/area.cpp (revision 420)
@@ -0,0 +1,348 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: area.h //
+// Description: header file for the computation of jet area //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: 149 $//
+// $Date:: 2007-03-15 00:13:58 +0100 (Thu, 15 Mar 2007) $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "area.h"
+#include "momentum.h"
+#include <stdlib.h>
+#include <iostream>
+
+namespace siscone{
+using namespace std;
+
+/*******************************************************
+ * Cjet_area implementation *
+ * real Jet information, including its area(s) *
+ * *
+ * This class contains information for one single jet. *
+ * That is, first, its momentum carrying information *
+ * about its centre and pT, and second, its particle *
+ * contents (from CJeT). *
+ * Compared to the Cjet class, it also includes the *
+ * passive and active areas of the jet computed using *
+ * the Carea class. *
+ *******************************************************/
+
+// default ctor
+//--------------
+Cjet_area::Cjet_area(){
+ active_area = passive_area = 0.0;
+}
+
+// jet-initiated ctor
+//-------------------
+Cjet_area::Cjet_area(Cjet &j){
+ v = j.v;
+ n = j.n;
+ contents = j.contents;
+
+ pass = j.pass;
+
+ pt_tilde = j.pt_tilde;
+ sm_var2 = j.sm_var2;
+
+ active_area = passive_area = 0.0;
+}
+
+// default dtor
+//--------------
+Cjet_area::~Cjet_area(){
+
+}
+
+
+/******************************************************************
+ * Csiscone_area implementation *
+ * class for the computation of jet areas. *
+ * *
+ * This is the class user should use whenever you want to compute *
+ * the jet area (passive and active). *
+ * It uses the SISCone algorithm to perform the jet analysis. *
+ ******************************************************************/
+
+// default ctor
+//-------------
+Carea::Carea(){
+ grid_size = 60; // 3600 particles added
+ grid_eta_max = 6.0; // maybe having twice more points in eta than in phi should be nice
+ grid_shift = 0.5; // 50% "shacking"
+
+ pt_soft = 1e-100;
+ pt_shift = 0.05;
+ pt_soft_min = 1e-90;
+}
+
+// default dtor
+//-------------
+Carea::~Carea(){
+
+}
+
+/*
+ * compute the jet areas from a given particle set.
+ * The parameters of this method are the ones which control the jet clustering alghorithm.
+ * Note that the pt_min is not allowed here soince the jet-area determination involves soft
+ * particles/jets and thus is used internally.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _f shared energy threshold for splitting&merging
+ * - _n_pass_max maximum number of passes (0=full search, the default)
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: SM_pt leads to IR unsafety for some events with momentum conservation.
+ * SM_Et is IR safe but not boost invariant and not implemented(!)
+ * SM_mt is IR safe for hadronic events, but not for decays of two
+ * back-to-back particles of identical mass
+ * SM_pttilde
+ * is always IR safe, and also boost invariant (default)
+ * - _hard_only when this is set on, only hard jets are computed
+ * and not the purely ghosted jets (default: false)
+ * return the jets together with their areas
+ * The return value is the number of jets (including pure-ghost ones if they are included)
+ ********************************************************************************************/
+int Carea::compute_areas(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max, Esplit_merge_scale _split_merge_scale,
+ bool _hard_only){
+
+ vector<Cmomentum> all_particles;
+
+ // put "hardest cut-off" if needed
+ // this avoids computation of ghosted jets when not required and
+ // significantly shortens the SM.
+ if (_hard_only){
+ SM_var2_hardest_cut_off = pt_soft_min*pt_soft_min;
+ }
+
+ // clear potential previous runs
+ jet_areas.clear();
+
+ // put initial set of particles in the list
+ int n_hard = _particles.size();
+ all_particles = _particles;
+
+ // build the set of ghost particles and add them to the particle list
+ int i,j;
+ double eta_g,phi_g,pt_g;
+
+ for (i=0;i<grid_size;i++){
+ for (j=0;j<grid_size;j++){
+ eta_g = grid_eta_max*(-1.0+2.0*(i+0.5+grid_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))))/grid_size);
+ phi_g = M_PI *(-1.0+2.0*(j+0.5+grid_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))))/grid_size);
+ pt_g = pt_soft*(1.0+pt_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))));
+ all_particles.push_back(Cmomentum(pt_g*cos(phi_g),pt_g*sin(phi_g),pt_g*sinh(eta_g),pt_g*cosh(eta_g)));
+ }
+ }
+
+ // run clustering with all particles.
+ // the split-merge here dynamically accounts for the purely soft jets.
+ // we therefore end up with the active area for the jets
+ int n_jets = compute_jets(all_particles, _radius, _f, _n_pass_max, 0.0, _split_merge_scale);
+
+ // save jets in the Cjet_area structure
+ // and determine their size
+ // jet contents is ordered by increasing index of the initial
+ // particles. Hence, we look for the first particle with index >= n_hard
+ // and deduce the number of ghosts in the jet, hence the area.
+ double area_factor = (2.0*grid_eta_max/grid_size)*(twopi/grid_size);
+
+ for (i=0;i<(int) jets.size();i++){
+ jet_areas.push_back(jets[i]);
+ j=0;
+ while ((j<jets[i].n) && (jets[i].contents[j]<n_hard)) j++;
+ jet_areas[i].active_area = (jets[i].n-j)*area_factor;
+ }
+
+ // determine passive jet area
+ // for that onem we use the pt_min cut in order to remove purely
+ // soft jets from the SM procedure
+ recompute_jets(_f, pt_soft_min);
+
+ // for the area computation, we assume the jete order is the same!
+ for (i=0;i<(int) jets.size();i++){
+ j=0;
+ while ((j<jets[i].n) && (jets[i].contents[j]<n_hard)) j++;
+ jet_areas[i].passive_area = (jets[i].n-j)*area_factor;
+ }
+
+ // Note:
+ // there surely remain purely soft je at the end
+ // their active area is 0 by default (see ctor)
+
+ jets.clear();
+
+ return n_jets;
+}
+
+/*
+ * compute the passive jet areas from a given particle set.
+ * The parameters of this method are the ones which control the jet clustering alghorithm.
+ * Note that the pt_min is not allowed here soince the jet-area determination involves soft
+ * particles/jets and thus is used internally.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _f shared energy threshold for splitting&merging
+ * - _n_pass_max maximum number of passes (0=full search, the default)
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: SM_pt leads to IR unsafety for some events with momentum conservation.
+ * SM_Et is IR safe but not boost invariant and not implemented(!)
+ * SM_mt is IR safe for hadronic events, but not for decays of two
+ * back-to-back particles of identical mass
+ * SM_pttilde
+ * is always IR safe, and also boost invariant (default)
+ * return the jets together with their passive areas
+ * The return value is the number of jets
+ ********************************************************************************************/
+int Carea::compute_passive_areas(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max, Esplit_merge_scale _split_merge_scale){
+
+ vector<Cmomentum> all_particles;
+
+ // in the case of passive area, we do not need
+ // to put the ghosts in the stable-cone search
+ // (they do no influence the list of stable cones)
+ // Here's how it goes...
+ stable_cone_soft_pt2_cutoff = pt_soft_min*pt_soft_min;
+
+ // clear potential previous runs
+ jet_areas.clear();
+
+ // put initial set of particles in the list
+ int n_hard = _particles.size();
+ all_particles = _particles;
+
+ // build the set of ghost particles and add them to the particle list
+ int i,j;
+ double eta_g,phi_g,pt_g;
+
+ for (i=0;i<grid_size;i++){
+ for (j=0;j<grid_size;j++){
+ eta_g = grid_eta_max*(-1.0+2.0*(i+0.5+grid_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))))/grid_size);
+ phi_g = M_PI *(-1.0+2.0*(j+0.5+grid_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))))/grid_size);
+ pt_g = pt_soft*(1.0+pt_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))));
+ all_particles.push_back(Cmomentum(pt_g*cos(phi_g),pt_g*sin(phi_g),pt_g*sinh(eta_g),pt_g*cosh(eta_g)));
+ }
+ }
+
+ // determine passive jet area
+ // for that onem we use the pt_min cut in order to remove purely
+ // soft jets from the SM procedure
+ int n_jets = compute_jets(all_particles, _radius, _f, _n_pass_max, pt_soft_min, _split_merge_scale);
+
+ // save jets in the Cjet_area structure
+ // and determine their size
+ // jet contents is ordered by increasing index of the initial
+ // particles. Hence, we look for the first particle with index >= n_hard
+ // and deduce the number of ghosts in the jet, hence the area.
+ double area_factor = (2.0*grid_eta_max/grid_size)*(twopi/grid_size);
+ for (i=0;i<(int) jets.size();i++){
+ j=0;
+ while ((j<jets[i].n) && (jets[i].contents[j]<n_hard)) j++;
+ jet_areas[i].passive_area = (jets[i].n-j)*area_factor;
+ }
+
+ jets.clear();
+
+ return n_jets;
+}
+
+/*
+ * compute the active jet areas from a given particle set.
+ * The parameters of this method are the ones which control the jet clustering alghorithm.
+ * Note that the pt_min is not allowed here soince the jet-area determination involves soft
+ * particles/jets and thus is used internally.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _f shared energy threshold for splitting&merging
+ * - _n_pass_max maximum number of passes (0=full search, the default)
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: SM_pt leads to IR unsafety for some events with momentum conservation.
+ * SM_Et is IR safe but not boost invariant and not implemented(!)
+ * SM_mt is IR safe for hadronic events, but not for decays of two
+ * back-to-back particles of identical mass
+ * SM_pttilde
+ * is always IR safe, and also boost invariant (default)
+ * - _hard_only when this is set on, only hard jets are computed
+ * and not the purely ghosted jets (default: false)
+ * return the jets together with their active areas
+ * The return value is the number of jets (including pure-ghost ones if they are included)
+ ********************************************************************************************/
+int Carea::compute_active_areas(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max, Esplit_merge_scale _split_merge_scale,
+ bool _hard_only){
+
+ vector<Cmomentum> all_particles;
+
+ // put "hardest cut-off" if needed
+ // this avoids computation of ghosted jets when not required and
+ // significantly shortens the SM.
+ if (_hard_only){
+ SM_var2_hardest_cut_off = pt_soft_min*pt_soft_min;
+ }
+
+ // clear potential previous runs
+ jet_areas.clear();
+
+ // put initial set of particles in the list
+ int n_hard = _particles.size();
+ all_particles = _particles;
+
+ // build the set of ghost particles and add them to the particle list
+ int i,j;
+ double eta_g,phi_g,pt_g;
+
+ for (i=0;i<grid_size;i++){
+ for (j=0;j<grid_size;j++){
+ eta_g = grid_eta_max*(-1.0+2.0*(i+0.5+grid_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))))/grid_size);
+ phi_g = M_PI *(-1.0+2.0*(j+0.5+grid_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))))/grid_size);
+ pt_g = pt_soft*(1.0+pt_shift*(-1.0+2.0*(rand()/(RAND_MAX+1.0))));
+ all_particles.push_back(Cmomentum(pt_g*cos(phi_g),pt_g*sin(phi_g),pt_g*sinh(eta_g),pt_g*cosh(eta_g)));
+ }
+ }
+
+ // run clustering with all particles.
+ // the split-merge here dynamically accounts for the purely soft jets.
+ // we therefore end up with the active area for the jets
+ int n_jets = compute_jets(all_particles, _radius, _f, _n_pass_max, 0.0, _split_merge_scale);
+
+ // save jets in the Cjet_area structure
+ // and determine their size
+ // jet contents is ordered by increasing index of the initial
+ // particles. Hence, we look for the first particle with index >= n_hard
+ // and deduce the number of ghosts in the jet, hence the area.
+ double area_factor = (2.0*grid_eta_max/grid_size)*(twopi/grid_size);
+
+ for (i=0;i<(int) jets.size();i++){
+ jet_areas.push_back(jets[i]);
+ j=0;
+ while ((j<jets[i].n) && (jets[i].contents[j]<n_hard)) j++;
+ jet_areas[i].active_area = (jets[i].n-j)*area_factor;
+ }
+
+ jets.clear();
+
+ return n_jets;
+}
+
+}
Index: tags/siscone-3.0.4/siscone/ranlux.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/ranlux.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/ranlux.cpp (revision 420)
@@ -0,0 +1,171 @@
+// file: ranlux.xpp
+#include "ranlux.h"
+#include <stdlib.h>
+#include <stdio.h>
+
+/* This is a lagged fibonacci generator with skipping developed by Luescher.
+ The sequence is a series of 24-bit integers, x_n,
+
+ x_n = d_n + b_n
+
+ where d_n = x_{n-10} - x_{n-24} - c_{n-1}, b_n = 0 if d_n >= 0 and
+ b_n = 2^24 if d_n < 0, c_n = 0 if d_n >= 0 and c_n = 1 if d_n < 0,
+ where after 24 samples a group of p integers are "skipped", to
+ reduce correlations. By default p = 199, but can be increased to
+ 365.
+
+ The period of the generator is around 10^171.
+
+ From: M. Luescher, "A portable high-quality random number generator
+ for lattice field theory calculations", Computer Physics
+ Communications, 79 (1994) 100-110.
+
+ Available on the net as hep-lat/9309020 at http://xxx.lanl.gov/
+
+ See also,
+
+ F. James, "RANLUX: A Fortran implementation of the high-quality
+ pseudo-random number generator of Luscher", Computer Physics
+ Communications, 79 (1994) 111-114
+
+ Kenneth G. Hamilton, F. James, "Acceleration of RANLUX", Computer
+ Physics Communications, 101 (1997) 241-248
+
+ Kenneth G. Hamilton, "Assembler RANLUX for PCs", Computer Physics
+ Communications, 101 (1997) 249-253 */
+
+namespace siscone{
+
+static const unsigned long int mask_lo = 0x00ffffffUL; // 2^24 - 1
+static const unsigned long int mask_hi = ~0x00ffffffUL;
+static const unsigned long int two24 = 16777216; // 2^24
+
+
+// internal generator structure
+//------------------------------
+typedef struct {
+ unsigned int i;
+ unsigned int j;
+ unsigned int n;
+ unsigned int skip;
+ unsigned int carry;
+ unsigned long int u[24];
+} ranlux_state_t;
+
+
+// internal generator state
+//--------------------------
+ranlux_state_t local_ranlux_state;
+
+
+// incrementation of the generator state
+//---------------------------------------
+static inline unsigned long int increment_state(){
+ unsigned int i = local_ranlux_state.i;
+ unsigned int j = local_ranlux_state.j;
+ long int delta = local_ranlux_state.u[j] - local_ranlux_state.u[i]
+ - local_ranlux_state.carry;
+
+ if (delta & mask_hi){
+ local_ranlux_state.carry = 1;
+ delta &= mask_lo;
+ } else {
+ local_ranlux_state.carry = 0;
+ }
+
+ local_ranlux_state.u[i] = delta;
+
+ if (i==0)
+ i = 23;
+ else
+ i--;
+
+ local_ranlux_state.i = i;
+
+ if (j == 0)
+ j = 23;
+ else
+ j--;
+
+ local_ranlux_state.j = j;
+
+ return delta;
+}
+
+
+// set generator state
+//---------------------
+static void ranlux_set(unsigned long int s){
+ int i;
+ long int seed;
+
+ if (s==0)
+ s = 314159265; /* default seed is 314159265 */
+
+ seed = s;
+
+ /* This is the initialization algorithm of F. James, widely in use
+ for RANLUX. */
+
+ for (i=0;i<24;i++){
+ unsigned long int k = seed/53668;
+ seed = 40014*(seed-k*53668)-k*12211;
+ if (seed<0){
+ seed += 2147483563;
+ }
+ local_ranlux_state.u[i] = seed%two24;
+ }
+
+ local_ranlux_state.i = 23;
+ local_ranlux_state.j = 9;
+ local_ranlux_state.n = 0;
+ local_ranlux_state.skip = 389-24; // 389 => best decorrelation
+
+ if (local_ranlux_state.u[23]&mask_hi){
+ local_ranlux_state.carry = 1;
+ } else {
+ local_ranlux_state.carry = 0;
+ }
+}
+
+
+// generator initialization
+//--------------------------
+void ranlux_init(){
+ // seed the generator
+ ranlux_set(0);
+}
+
+
+// get random number
+//-------------------
+unsigned long int ranlux_get(){
+ const unsigned int skip = local_ranlux_state.skip;
+ unsigned long int r = increment_state();
+
+ local_ranlux_state.n++;
+
+ if (local_ranlux_state.n == 24){
+ unsigned int i;
+ local_ranlux_state.n = 0;
+ for (i = 0; i < skip; i++)
+ increment_state();
+ }
+
+ return r;
+}
+
+// print generator state
+//-----------------------
+void ranlux_print_state(){
+ size_t i;
+ unsigned char *p = (unsigned char *) (&local_ranlux_state);
+ const size_t n = sizeof (ranlux_state_t);
+
+ for (i=0;i<n;i++){
+ /* FIXME: we're assuming that a char is 8 bits */
+ printf("%.2x", *(p+i));
+ }
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/ranlux.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/quadtree.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/quadtree.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/quadtree.cpp (revision 420)
@@ -0,0 +1,304 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: quadtree.cpp //
+// Description: source file for quadtree management (Cquadtree class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "quadtree.h"
+#include <math.h>
+#include <stdio.h>
+#include <iostream>
+
+namespace siscone{
+
+using namespace std;
+
+/*******************************************************************
+ * Cquadtree implementation *
+ * Implementation of a 2D quadtree. *
+ * This class implements the traditional two-dimensional quadtree. *
+ * The elements at each node are of 'Cmomentum' type. *
+ *******************************************************************/
+
+// default ctor
+//--------------
+Cquadtree::Cquadtree(){
+ v = NULL;
+
+ children[0][0] = children[0][1] = children[1][0] = children[1][1] = NULL;
+ has_child = false;
+}
+
+
+// ctor with initialisation (see init for details)
+//--------------------------
+Cquadtree::Cquadtree(double _x, double _y, double _half_size_x, double _half_size_y){
+ v = NULL;
+
+ children[0][0] = children[0][1] = children[1][0] = children[1][1] = NULL;
+ has_child = false;
+
+ init(_x, _y, _half_size_x, _half_size_y);
+}
+
+
+// default destructor
+// at destruction, everything is destroyed except
+// physical values at the leaves
+//------------------------------------------------
+Cquadtree::~Cquadtree(){
+ if (has_child){
+ if (v!=NULL) delete v;
+ delete children[0][0];
+ delete children[0][1];
+ delete children[1][0];
+ delete children[1][1];
+ }
+}
+
+
+/*
+ * init the tree.
+ * By initializing the tree, we mean setting the cell parameters
+ * and preparing the object to act as a seed for a new tree.
+ * - _x x-position of the center
+ * - _y y-position of the center
+ * - half_size_x half x-size of the cell
+ * - half_size_y half y-size of the cell
+ * return 0 on success, 1 on error. Note that if the cell
+ * is already filled, we return an error.
+ ******************************************************************/
+int Cquadtree::init(double _x, double _y, double _half_size_x, double _half_size_y){
+ if (v!=NULL)
+ return 1;
+
+ centre_x = _x;
+ centre_y = _y;
+ half_size_x = _half_size_x;
+ half_size_y = _half_size_y;
+
+ return 0;
+}
+
+
+/*
+ * adding a particle to the tree.
+ * This method adds one vector to the quadtree structure which
+ * is updated consequently.
+ * - v vector to add
+ * return 0 on success 1 on error
+ ******************************************************************/
+int Cquadtree::add(Cmomentum *v_add){
+ // Description of the method:
+ // --------------------------
+ // the addition process goes as follows:
+ // 1. check if the cell is empty, in which case, add the particle
+ // here and leave.
+ // 2. If there is a unique particle already inside,
+ // (a) create children
+ // (b) forward the existing particle to the appropriate child
+ // 3. Add current particle to this cell and forward to the
+ // adequate child
+ // NOTE: we assume in the whole procedure that the particle is
+ // indeed inside the cell !
+
+ // step 1: the case of empty cells
+ if (v==NULL){
+ v = v_add;
+ return 0;
+ }
+
+ // step 2: additional work if 1! particle already present
+ // we use the fact that only 1-particle systems have no child
+ if (!has_child){
+ double new_half_size_x = 0.5*half_size_x;
+ double new_half_size_y = 0.5*half_size_y;
+ // create children
+ children[0][0] = new Cquadtree(centre_x-new_half_size_x, centre_y-new_half_size_y,
+ new_half_size_x, new_half_size_y);
+ children[0][1] = new Cquadtree(centre_x-new_half_size_x, centre_y+new_half_size_y,
+ new_half_size_x, new_half_size_y);
+ children[1][0] = new Cquadtree(centre_x+new_half_size_x, centre_y-new_half_size_y,
+ new_half_size_x, new_half_size_y);
+ children[1][1] = new Cquadtree(centre_x+new_half_size_x, centre_y+new_half_size_y,
+ new_half_size_x, new_half_size_y);
+
+ has_child = true;
+
+ // forward to child
+ //? The following line assumes 'true'==1 and 'false'==0
+ // Note: v being a single particle, eta and phi are correct
+ children[v->eta>centre_x][v->phi>centre_y]->add(v);
+
+ // copy physical params
+ v = new Cmomentum(*v);
+ }
+
+ // step 3: add new particle
+ // Note: v_add being a single particle, eta and phi are correct
+ children[v_add->eta>centre_x][v_add->phi>centre_y]->add(v_add);
+ *v+=*v_add;
+
+ return 0;
+}
+
+
+/*
+ * circle intersection.
+ * computes the intersection with a circle of given centre and radius.
+ * The output takes the form of a quadtree with all squares included
+ * in the circle.
+ * - cx circle centre x coordinate
+ * - cy circle centre y coordinate
+ * - cR2 circle radius SQUARED
+ * return the checksum for the intersection
+ ******************************************************************/
+Creference Cquadtree::circle_intersect(double cx, double cy, double cR2){
+ // Description of the method:
+ // --------------------------
+ // 1. check if cell is empty => no intersection
+ // 2. if cell has 1! particle, check if it is inside the circle.
+ // If yes, add it and return, if not simply return.
+ // 3. check if the circle intersects the square. If not, return.
+ // 4. check if the square is inside the circle.
+ // If yes, add it to qt and return.
+ // 5. check intersections with children.
+
+ // step 1: if there is no particle inside te square, no reason to go further
+ if (v==NULL)
+ return Creference();
+
+ double dx, dy;
+
+ // step 2: if there is only one particle inside the square, test if it is in
+ // the circle, in which case return associated reference
+ if (!has_child){
+ // compute the distance
+ // Note: v has only one particle => eta and phi are defined
+ dx = cx - v->eta;
+ dy = fabs(cy - v->phi);
+ if (dy>M_PI)
+ dy -= 2.0*M_PI;
+
+ // test distance
+ if (dx*dx+dy*dy<cR2){
+ return v->ref;
+ }
+
+ return Creference();
+ }
+
+ // step 3: check if there is an intersection
+ //double ryp, rym;
+ double dx_c, dy_c;
+
+ // store distance with the centre of the square
+ dx_c = fabs(cx-centre_x);
+ dy_c = fabs(cy-centre_y);
+ if (dy_c>M_PI) dy_c = 2.0*M_PI-dy_c;
+
+ // compute (minimal) the distance (pay attention to the periodicity in phi).
+ dx = dx_c-half_size_x;
+ if (dx<0) dx=0;
+ dy = dy_c-half_size_y;
+ if (dy<0) dy=0;
+
+ // check the distance
+ if (dx*dx+dy*dy>=cR2){
+ // no intersection
+ return Creference();
+ }
+
+ // step 4: check if included
+
+ // compute the (maximal) distance
+ dx = dx_c+half_size_x;
+ dy = dy_c+half_size_y;
+ if (dy>M_PI) dy = M_PI;
+
+ // compute the distance
+ if (dx*dx+dy*dy<cR2){
+ return v->ref;
+ }
+
+ // step 5: the square is not fully in. Recurse to children
+ return children[0][0]->circle_intersect(cx, cy, cR2)
+ + children[0][1]->circle_intersect(cx, cy, cR2)
+ + children[1][0]->circle_intersect(cx, cy, cR2)
+ + children[1][1]->circle_intersect(cx, cy, cR2);
+}
+
+
+/*
+ * output a data file for drawing the grid.
+ * This can be used to output a data file containing all the
+ * grid subdivisions. The file contents is as follows:
+ * first and second columns give center of the cell, the third
+ * gives the size.
+ * - flux opened stream to write to
+ * return 0 on success, 1 on error
+ ******************************************************************/
+int Cquadtree::save(FILE *flux){
+
+ if (flux==NULL)
+ return 1;
+
+ if (has_child){
+ fprintf(flux, "%e\t%e\t%e\t%e\n", centre_x, centre_y, half_size_x, half_size_y);
+ children[0][0]->save(flux);
+ children[0][1]->save(flux);
+ children[1][0]->save(flux);
+ children[1][1]->save(flux);
+ }
+
+ return 0;
+}
+
+
+/*
+ * output a data file for drawing the tree leaves.
+ * This can be used to output a data file containing all the
+ * tree leaves. The file contents is as follows:
+ * first and second columns give center of the cell, the third
+ * gives the size.
+ * - flux opened stream to write to
+ * return 0 on success, 1 on error
+ ******************************************************************/
+int Cquadtree::save_leaves(FILE *flux){
+
+ if (flux==NULL)
+ return 1;
+
+ if (has_child){
+ if (children[0][0]!=NULL) children[0][0]->save_leaves(flux);
+ if (children[0][1]!=NULL) children[0][1]->save_leaves(flux);
+ if (children[1][0]!=NULL) children[1][0]->save_leaves(flux);
+ if (children[1][1]!=NULL) children[1][1]->save_leaves(flux);
+ } else {
+ fprintf(flux, "%e\t%e\t%e\t%e\n", centre_x, centre_y, half_size_x, half_size_y);
+ }
+
+ return 0;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/quadtree.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/split_merge.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/split_merge.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/split_merge.cpp (revision 420)
@@ -0,0 +1,1186 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: split_merge.cpp //
+// Description: source file for splitting/merging (contains the CJet class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "split_merge.h"
+#include "siscone_error.h"
+#include "momentum.h"
+#include <limits> // for max
+#include <iostream>
+#include <algorithm>
+#include <sstream>
+#include <cassert>
+#include <cmath>
+
+namespace siscone{
+
+using namespace std;
+
+/********************************************************
+ * class Cjet implementation *
+ * real Jet information. *
+ * This class contains information for one single jet. *
+ * That is, first, its momentum carrying information *
+ * about its centre and pT, and second, its particle *
+ * contents *
+ ********************************************************/
+// default ctor
+//--------------
+Cjet::Cjet(){
+ n = 0;
+ v = Cmomentum();
+ pt_tilde = 0.0;
+ sm_var2 = 0.0;
+ pass = CJET_INEXISTENT_PASS; // initialised to a value that should
+ // notappear in the end (after clustering)
+}
+
+// default dtor
+//--------------
+Cjet::~Cjet(){
+
+}
+
+// ordering of jets in pt (e.g. used in final jets ordering)
+//-----------------------------------------------------------
+bool jets_pt_less(const Cjet &j1, const Cjet &j2){
+ return j1.v.perp2() > j2.v.perp2();
+}
+
+
+/********************************************************
+ * Csplit_merge_ptcomparison implementation *
+ * This deals with the ordering of the jets candidates *
+ ********************************************************/
+
+// odering of two jets
+// The variable of the ordering is pt or mt
+// depending on 'split_merge_scale' choice
+//
+// with EPSILON_SPLITMERGE defined, this attempts to identify
+// delicate cases where two jets have identical momenta except for
+// softish particles -- the difference of pt's may not be correctly
+// identified normally and so lead to problems for the fate of the
+// softish particle.
+//
+// NB: there is a potential issue in momentum-conserving events,
+// whereby the harder of two jets becomes ill-defined when a soft
+// particle is emitted --- this may have a knock-on effect on
+// subsequent split-merge steps in cases with sufficiently large R
+// (but we don't know what the limit is...)
+//------------------------------------------------------------------
+bool Csplit_merge_ptcomparison::operator ()(const Cjet &jet1, const Cjet &jet2) const{
+ double q1, q2;
+
+ // compute the value for comparison for both jets
+ // This depends on the choice of variable (mt is the default)
+ q1 = jet1.sm_var2;
+ q2 = jet2.sm_var2;
+
+ bool res = q1 > q2;
+
+ // if we enable the refined version of the comparison (see defines.h),
+ // we compute the difference more precisely when the two jets are very
+ // close in the ordering variable.
+#ifdef EPSILON_SPLITMERGE
+ if ( (fabs(q1-q2) < EPSILON_SPLITMERGE*max(q1,q2)) &&
+ (jet1.v.ref != jet2.v.ref) ) {
+ // get the momentum of the difference
+ Cmomentum difference;
+ double pt_tilde_difference;
+ get_difference(jet1,jet2,&difference,&pt_tilde_difference);
+
+ // use the following relation: pt1^2 - pt2^2 = (pt1+pt2)*(pt1-pt2)
+ double qdiff;
+ Cmomentum sum = jet1.v ;
+ sum += jet2.v;
+ double pt_tilde_sum = jet1.pt_tilde + jet2.pt_tilde;
+
+ // depending on the choice of ordering variable, set the result
+ switch (split_merge_scale){
+ case SM_mt:
+ qdiff = sum.E*difference.E - sum.pz*difference.pz;
+ break;
+ case SM_pt:
+ qdiff = sum.px*difference.px + sum.py*difference.py;
+ break;
+ case SM_pttilde:
+ qdiff = pt_tilde_sum*pt_tilde_difference;
+ break;
+ case SM_Et:
+ // diff = E^2 (dpt^2 pz^2- pt^2 dpz^2)
+ // + dE^2 (pt^2+pz^2) pt2^2
+ // where, unless explicitely specified the variables
+ // refer to the first jet or differences jet1-jet2.
+ qdiff = jet1.v.E*jet1.v.E*
+ ((sum.px*difference.px + sum.py*difference.py)*jet1.v.pz*jet1.v.pz
+ -jet1.v.perp2()*sum.pz*difference.pz)
+ +sum.E*difference.E*(jet1.v.perp2()+jet1.v.pz*jet1.v.pz)*jet2.v.perp2();
+ break;
+ default:
+ throw Csiscone_error("Unsupported split-merge scale choice: "
+ + SM_scale_name());
+ }
+ res = qdiff > 0;
+ }
+#endif // EPSILON_SPLITMERGE
+
+ return res;
+}
+
+
+/// return a name for the sm scale choice
+/// NB: used internally and also by fastjet
+std::string split_merge_scale_name(Esplit_merge_scale sms) {
+ switch(sms) {
+ case SM_pt:
+ return "pt (IR unsafe)";
+ case SM_Et:
+ return "Et (boost dep.)";
+ case SM_mt:
+ return "mt (IR safe except for pairs of identical decayed heavy particles)";
+ case SM_pttilde:
+ return "pttilde (scalar sum of pt's)";
+ default:
+ return "[SM scale without a name]";
+ }
+}
+
+
+// get the difference between 2 jets
+// - j1 first jet
+// - j2 second jet
+// - v jet1-jet2
+// - pt_tilde jet1-jet2 pt_tilde
+// return true if overlapping, false if disjoint
+//-----------------------------------------------
+void Csplit_merge_ptcomparison::get_difference(const Cjet &j1, const Cjet &j2, Cmomentum *v, double *pt_tilde) const {
+ int i1,i2;
+
+ // initialise
+ i1=i2=0;
+ *v = Cmomentum();
+ *pt_tilde = 0.0;
+
+ // compute overlap
+ // at the same time, we store union in indices
+ do{
+ if (j1.contents[i1]==j2.contents[i2]) {
+ i1++;
+ i2++;
+ } else if (j1.contents[i1]<j2.contents[i2]){
+ (*v) += (*particles)[j1.contents[i1]];
+ (*pt_tilde) += (*pt)[j1.contents[i1]];
+ i1++;
+ } else if (j1.contents[i1]>j2.contents[i2]){
+ (*v) -= (*particles)[j2.contents[i2]];
+ (*pt_tilde) -= (*pt)[j2.contents[i2]];
+ i2++;
+ } else {
+ throw Csiscone_error("get_non_overlap reached part it should never have seen...");
+ }
+ } while ((i1<j1.n) && (i2<j2.n));
+
+ // deal with particles at the end of the list...
+ while (i1 < j1.n) {
+ (*v) += (*particles)[j1.contents[i1]];
+ (*pt_tilde) += (*pt)[j1.contents[i1]];
+ i1++;
+ }
+ while (i2 < j2.n) {
+ (*v) -= (*particles)[j2.contents[i2]];
+ (*pt_tilde) -= (*pt)[j2.contents[i2]];
+ i2++;
+ }
+}
+
+
+/********************************************************
+ * class Csplit_merge implementation *
+ * Class used to split and merge jets. *
+ ********************************************************/
+// default ctor
+//--------------
+Csplit_merge::Csplit_merge(){
+ merge_identical_protocones = false;
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+#ifdef MERGE_IDENTICAL_PROTOCONES_DEFAULT_TRUE
+ merge_identical_protocones = true;
+#endif
+#endif
+ _user_scale = NULL;
+ indices = NULL;
+
+ // ensure that ptcomparison points to our set of particles (though params not correct)
+ ptcomparison.particles = &particles;
+ ptcomparison.pt = &pt;
+ candidates.reset(new multiset<Cjet,Csplit_merge_ptcomparison>(ptcomparison));
+
+ // no hardest cut (col-unsafe)
+ SM_var2_hardest_cut_off = -numeric_limits<double>::max();
+
+ // no pt cutoff for the particles to put in p_uncol_hard
+ stable_cone_soft_pt2_cutoff = -1.0;
+
+ // no pt-weighted splitting
+ use_pt_weighted_splitting = false;
+}
+
+
+// default dtor
+//--------------
+Csplit_merge::~Csplit_merge(){
+ full_clear();
+}
+
+
+// initialisation function
+// - _particles list of particles
+// - protocones list of protocones (initial jet candidates)
+// - R2 cone radius (squared)
+// - ptmin minimal pT allowed for jets
+//-------------------------------------------------------------
+int Csplit_merge::init(vector<Cmomentum> & /*_particles*/, vector<Cmomentum> *protocones, double R2, double ptmin){
+ // browse protocones
+ return add_protocones(protocones, R2, ptmin);
+}
+
+
+// initialisation function for particle list
+// - _particles list of particles
+//-------------------------------------------------------------
+int Csplit_merge::init_particles(vector<Cmomentum> &_particles){
+ full_clear();
+
+ // compute the list of particles
+ // here, we do not need to throw away particles
+ // with infinite rapidity (colinear with the beam)
+ particles = _particles;
+ n = particles.size();
+
+ // build the vector of particles' pt
+ pt.resize(n);
+ for (int i=0;i<n;i++)
+ pt[i] = particles[i].perp();
+
+ // ensure that ptcomparison points to our set of particles (though params not correct)
+ ptcomparison.particles = &particles;
+ ptcomparison.pt = &pt;
+
+ // set up the list of particles left.
+ init_pleft();
+
+ indices = new int[n];
+
+ return 0;
+}
+
+
+// build initial list of remaining particles
+//------------------------------------------
+int Csplit_merge::init_pleft(){
+ // at this level, we only rule out particles with
+ // infinite rapidity
+ // in the parent particle list, index contain the run
+ // at which particles are puts in jets:
+ // - -1 means infinity rapidity
+ // - 0 means not included
+ // - i mean included at run i
+ int i,j;
+
+ // copy particles removing the ones with infinite rapidity
+ // determine min,max eta
+ j=0;
+ double eta_min=0.0; /// for the Ceta_phi_range static member!
+ double eta_max=0.0; /// for the Ceta_phi_range static member!
+ p_remain.clear();
+ for (i=0;i<n;i++){
+ // set ref for checkxor
+ particles[i].ref.randomize();
+
+ // check if rapidity is not infinite or ill-defined
+ if (fabs(particles[i].pz) < (particles[i].E)){
+ p_remain.push_back(particles[i]);
+ // set up parent index for tracability
+ p_remain[j].parent_index = i;
+ // left particles are marked with a 1
+ // IMPORTANT NOTE: the meaning of index in p_remain is
+ // somehow different as in the initial particle list.
+ // here, within one pass, we use the index to track whether
+ // a particle is included in the current pass (index set to 0
+ // in add_protocones) or still remain (index still 1)
+ p_remain[j].index = 1;
+
+ j++;
+ // set up parent-particle index
+ particles[i].index = 0;
+
+ eta_min = min(eta_min, particles[i].eta);
+ eta_max = max(eta_max, particles[i].eta);
+ } else {
+ particles[i].index = -1;
+ }
+ }
+ n_left = p_remain.size();
+ n_pass = 0;
+
+ Ceta_phi_range epr;
+ epr.eta_min = eta_min-0.01;
+ epr.eta_max = eta_max+0.01;
+
+ merge_collinear_and_remove_soft();
+
+ return 0;
+}
+
+
+// partial clearance
+// we want to keep particle list and indices
+// for future usage, so do not clear it !
+// this is done in full_clear
+//----------------------------------------
+int Csplit_merge::partial_clear(){
+ // release jets
+
+ // set up the auto_ptr for the multiset with the _current_ state of
+ // ptcomparison (which may have changed since we constructed the
+ // class)
+ candidates.reset(new multiset<Cjet,Csplit_merge_ptcomparison>(ptcomparison));
+
+ // start off with huge number
+ most_ambiguous_split = numeric_limits<double>::max();
+
+ jets.clear();
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ if (merge_identical_protocones)
+ cand_refs.clear();
+#endif
+
+ p_remain.clear();
+
+ return 0;
+}
+
+
+// full clearance
+//----------------
+int Csplit_merge::full_clear(){
+ partial_clear();
+
+ // clear previously allocated memory
+ if (indices != NULL){
+ delete[] indices;
+ }
+ particles.clear();
+
+ return 0;
+}
+
+
+// build the list 'p_uncol_hard' from p_remain by clustering collinear particles
+// note that thins in only used for stable-cone detection
+// so the parent_index field is unnecessary
+//-------------------------------------------------------------------------
+int Csplit_merge::merge_collinear_and_remove_soft(){
+ int i,j;
+ vector<Cmomentum> p_sorted;
+ bool collinear;
+ double dphi;
+
+ p_uncol_hard.clear();
+
+ // we first sort the particles according to their rapidity
+ for (i=0;i<n_left;i++)
+ p_sorted.push_back(p_remain[i]);
+ sort(p_sorted.begin(), p_sorted.end(), momentum_eta_less);
+
+ // then we cluster particles looping over the particles in the following way
+ // if (a particle i has same eta-phi a one after (j))
+ // then add momentum i to j
+ // else add i to the p_uncol_hard list
+ i = 0;
+ while (i<n_left){
+ // check if the particle passes the stable_cone_soft_pt2_cutoff
+ if (p_sorted[i].perp2()<stable_cone_soft_pt2_cutoff) {
+ i++;
+ continue;
+ }
+
+ // check if there is(are) particle(s) with the 'same' eta
+ collinear = false;
+ j=i+1;
+ while ((j<n_left) && (fabs(p_sorted[j].eta-p_sorted[i].eta)<EPSILON_COLLINEAR) && (!collinear)){
+ dphi = fabs(p_sorted[j].phi-p_sorted[i].phi);
+ if (dphi>M_PI) dphi = twopi-dphi;
+ if (dphi<EPSILON_COLLINEAR){
+ // i is collinear with j; add the momentum (i) to the momentum (j)
+ p_sorted[j] += p_sorted[i];
+ // set collinearity test to true
+ collinear = true;
+ }
+ j++;
+ }
+ // if no collinearity detected, add the particle to our list
+ if (!collinear)
+ p_uncol_hard.push_back(p_sorted[i]);
+ i++;
+ }
+
+ return 0;
+}
+
+
+// add a list of protocones
+// - protocones list of protocones (initial jet candidates)
+// - R2 cone radius (squared)
+// - ptmin minimal pT allowed for jets
+//-------------------------------------------------------------
+int Csplit_merge::add_protocones(vector<Cmomentum> *protocones, double R2, double ptmin){
+ int i;
+ Cmomentum *c;
+ Cmomentum *v;
+ double eta, phi;
+ double dx, dy;
+ double R;
+ Cjet jet;
+
+ if (protocones->size()==0)
+ return 1;
+
+ pt_min2 = ptmin*ptmin;
+ R = sqrt(R2);
+
+ // browse protocones
+ // for each of them, build the list of particles in them
+ for (vector<Cmomentum>::iterator p_it = protocones->begin();p_it != protocones->end();p_it++){
+ // initialise variables
+ c = &(*p_it);
+
+ // note: cones have been tested => their (eta,phi) coordinates are computed
+ eta = c->eta;
+ phi = c->phi;
+
+ // browse particles to create cone contents
+ // note that jet is always initialised with default values at this level
+ jet.v = Cmomentum();
+ jet.pt_tilde=0;
+ jet.contents.clear();
+ for (i=0;i<n_left;i++){
+ v = &(p_remain[i]);
+ // for security, avoid including particles with infinite rapidity)
+ // NO NEEDED ANYMORE SINCE REMOVED FROM p_remain FROM THE BEGINNING
+ //if (fabs(v->pz)!=v->E){
+ dx = eta - v->eta;
+ dy = fabs(phi - v->phi);
+ if (dy>M_PI)
+ dy -= twopi;
+ if (dx*dx+dy*dy<R2){
+ jet.contents.push_back(v->parent_index);
+ jet.v+= *v;
+ jet.pt_tilde+= pt[v->parent_index];
+ v->index=0;
+ }
+ }
+ jet.n=jet.contents.size();
+
+ // set the momentum in protocones
+ // (it was only known through eta and phi up to now)
+ *c = jet.v;
+ c->eta = eta; // restore exact original coords
+ c->phi = phi; // to avoid rounding error inconsistencies
+
+ // set the jet range
+ jet.range=Ceta_phi_range(eta,phi,R);
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "adding jet: ";
+ for (int i2=0;i2<jet.n;i2++)
+ cout << jet.contents[i2] << " ";
+ cout << endl;
+#endif
+
+ // add it to the list of jets
+ insert(jet);
+ }
+
+ // update list of included particles
+ n_pass++;
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "remaining particles: ";
+#endif
+ int j=0;
+ for (i=0;i<n_left;i++){
+ if (p_remain[i].index){
+ // copy particle
+ p_remain[j]=p_remain[i];
+ p_remain[j].parent_index = p_remain[i].parent_index;
+ p_remain[j].index=1;
+ // set run in initial list
+ particles[p_remain[j].parent_index].index = n_pass;
+#ifdef DEBUG_SPLIT_MERGE
+ cout << p_remain[j].parent_index << " ";
+#endif
+ j++;
+ }
+ }
+#ifdef DEBUG_SPLIT_MERGE
+ cout << endl;
+#endif
+ n_left = j;
+ p_remain.resize(j);
+
+ merge_collinear_and_remove_soft();
+
+ return 0;
+}
+
+
+/*
+ * remove the hardest protocone and declare it a a jet
+ * - protocones list of protocones (initial jet candidates)
+ * - R2 cone radius (squared)
+ * - ptmin minimal pT allowed for jets
+ * return 0 on success, 1 on error
+ *
+ * The list of remaining particles (and the uncollinear-hard ones)
+ * is updated.
+ */
+int Csplit_merge::add_hardest_protocone_to_jets(std::vector<Cmomentum> *protocones, double R2, double ptmin){
+
+ int i;
+ Cmomentum *c;
+ Cmomentum *v;
+ double eta, phi;
+ double dx, dy;
+ double R;
+ Cjet jet, jet_candidate;
+ bool found_jet = false;
+
+ if (protocones->size()==0)
+ return 1;
+
+ pt_min2 = ptmin*ptmin;
+ R = sqrt(R2);
+
+ // browse protocones
+ // for each of them, build the list of particles in them
+ for (vector<Cmomentum>::iterator p_it = protocones->begin();p_it != protocones->end();p_it++){
+ // initialise variables
+ c = &(*p_it);
+
+ // note: cones have been tested => their (eta,phi) coordinates are computed
+ eta = c->eta;
+ phi = c->phi;
+
+ // NOTE: this is common to this method and add_protocones, so it
+ // could be moved into a 'build_jet_from_protocone' method
+ //
+ // browse particles to create cone contents
+ jet_candidate.v = Cmomentum();
+ jet_candidate.pt_tilde=0;
+ jet_candidate.contents.clear();
+ for (i=0;i<n_left;i++){
+ v = &(p_remain[i]);
+ // for security, avoid including particles with infinite rapidity)
+ // NO NEEDED ANYMORE SINCE REMOVED FROM p_remain FROM THE BEGINNING
+ //if (fabs(v->pz)!=v->E){
+ dx = eta - v->eta;
+ dy = fabs(phi - v->phi);
+ if (dy>M_PI)
+ dy -= twopi;
+ if (dx*dx+dy*dy<R2){
+ jet_candidate.contents.push_back(v->parent_index);
+ jet_candidate.v+= *v;
+ jet_candidate.pt_tilde+= pt[v->parent_index];
+ v->index=0;
+ }
+ }
+ jet_candidate.n=jet_candidate.contents.size();
+
+ // set the momentum in protocones
+ // (it was only known through eta and phi up to now)
+ *c = jet_candidate.v;
+ c->eta = eta; // restore exact original coords
+ c->phi = phi; // to avoid rounding error inconsistencies
+
+ // set the jet range
+ jet_candidate.range=Ceta_phi_range(eta,phi,R);
+
+ // check that the protojet has large enough pt
+ if (jet_candidate.v.perp2()<pt_min2)
+ continue;
+
+ // assign the split-merge (or progressive-removal) squared scale variable
+ if (_user_scale) {
+ // sm_var2 is the signed square of the user scale returned
+ // for the jet candidate
+ jet_candidate.sm_var2 = (*_user_scale)(jet_candidate);
+ jet_candidate.sm_var2 *= abs(jet_candidate.sm_var2);
+ } else {
+ jet_candidate.sm_var2 = get_sm_var2(jet_candidate.v, jet_candidate.pt_tilde);
+ }
+
+ // now check if it is possibly the hardest
+ if ((! found_jet) ||
+ (_user_scale ? _user_scale->is_larger(jet_candidate, jet)
+ : ptcomparison(jet_candidate, jet))){
+ jet = jet_candidate;
+ found_jet = true;
+ }
+ }
+
+ // make sure at least one of the jets has passed the selection
+ if (!found_jet) return 1;
+
+ // add the jet to the list of jets
+ jets.push_back(jet);
+ jets[jets.size()-1].v.build_etaphi();
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "PR-Jet " << jets.size() << " [size " << jet.contents.size() << "]:";
+#endif
+
+ // update the list of what particles are left
+ int p_remain_index = 0;
+ int contents_index = 0;
+ //sort(next_jet.contents.begin(),next_jet.contents.end());
+ for (int index=0;index<n_left;index++){
+ if ((contents_index<(int) jet.contents.size()) &&
+ (p_remain[index].parent_index == jet.contents[contents_index])){
+ // this particle belongs to the newly found jet
+ // set pass in initial list
+ particles[p_remain[index].parent_index].index = n_pass;
+#ifdef DEBUG_SPLIT_MERGE
+ cout << " " << jet.contents[contents_index];
+#endif
+ contents_index++;
+ } else {
+ // this particle still has to be clustered
+ p_remain[p_remain_index] = p_remain[index];
+ p_remain[p_remain_index].parent_index = p_remain[index].parent_index;
+ p_remain[p_remain_index].index=1;
+ p_remain_index++;
+ }
+ }
+ p_remain.resize(n_left-jet.contents.size());
+ n_left = p_remain.size();
+ jets[jets.size()-1].pass = particles[jet.contents[0]].index;
+
+ // increase the pass index
+ n_pass++;
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << endl;
+#endif
+
+ // male sure the list of uncol_hard particles (used for the next
+ // stable cone finding) is updated [could probably be more
+ // efficient]
+ merge_collinear_and_remove_soft();
+
+ return 0;
+}
+
+/*
+ * really do the splitting and merging
+ * At the end, the vector jets is filled with the jets found.
+ * the 'contents' field of each jets contains the indices
+ * of the particles included in that jet.
+ * - overlap_tshold threshold for splitting/merging transition
+ * - ptmin minimal pT allowed for jets
+ * return the number of jets is returned
+ ******************************************************************/
+int Csplit_merge::perform(double overlap_tshold, double ptmin){
+ // iterators for the 2 jets
+ cjet_iterator j1;
+ cjet_iterator j2;
+
+ pt_min2 = ptmin*ptmin;
+
+ if (candidates->size()==0)
+ return 0;
+
+ if (overlap_tshold>=1.0 || overlap_tshold <= 0) {
+ ostringstream message;
+ message << "Illegal value for overlap_tshold, f = " << overlap_tshold;
+ message << " (legal values are 0<f<1)";
+ throw Csiscone_error(message.str());
+ }
+
+ // overlap (the contents of this variable depends on the choice for
+ // the split--merge variable.)
+ // Note that the square of the ovelap is used
+ double overlap2;
+
+ // avoid to compute tshold*tshold at each overlap
+ double overlap_tshold2 = overlap_tshold*overlap_tshold;
+
+ do{
+ if (candidates->size()>0){
+ // browse for the first jet
+ j1 = candidates->begin();
+
+ // if hardest jet does not pass threshold then nothing else will
+ // either so one stops the split merge.
+ if (j1->sm_var2<SM_var2_hardest_cut_off) {break;}
+
+ // browse for the second jet
+ j2 = j1;
+ j2++;
+ int j2_relindex = 1; // used only in ifdef, but costs little so keep it outside
+
+ while (j2 != candidates->end()){
+#ifdef DEBUG_SPLIT_MERGE
+ show();
+#endif
+ // check overlapping
+ if (get_overlap(*j1, *j2, &overlap2)){
+ // check if overlapping energy passes threshold
+ // Note that this depends on the ordering variable
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "overlap between cdt 1 and cdt " << j2_relindex+1 << " with overlap "
+ << sqrt(overlap2/j2->sm_var2) << endl<<endl;
+#endif
+ if (overlap2<overlap_tshold2*j2->sm_var2){
+ // split jets
+ split(j1, j2);
+
+ // update iterators
+ j2 = j1 = candidates->begin();
+ j2_relindex = 0;
+ } else {
+ // merge jets
+ merge(j1, j2);
+
+ // update iterators
+ j2 = j1 = candidates->begin();
+ j2_relindex = 0;
+ }
+ }
+ // watch out: split/merge might have caused new jets with pt <
+ // ptmin to disappear, so the total number of jets may
+ // have changed by more than expected and j2 might already by
+ // the end of the candidates list...
+ j2_relindex++;
+ if (j2 != candidates->end()) j2++;
+ } // end of loop on the second jet
+
+ if (j1 != candidates->end()) {
+ // all "second jet" passed without overlapping
+ // (otherwise we won't leave the j2 loop)
+ // => store jet 1 as real jet
+ jets.push_back(*j1);
+ jets[jets.size()-1].v.build_etaphi();
+ // a bug where the contents has non-zero size has been cropping
+ // up in many contexts -- so catch it!
+ assert(j1->contents.size() > 0);
+ jets[jets.size()-1].pass = particles[j1->contents[0]].index;
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ cand_refs.erase(j1->v.ref);
+#endif
+ candidates->erase(j1);
+
+ //// test that the hardest jet pass the potential cut-off
+ //if ((candidates->size()!=0) &&
+ // (candidates->begin()->sm_var2<SM_var2_hardest_cut_off)){
+ // candidates->clear();
+ //}
+ }
+ }
+ } while (candidates->size()>0);
+
+ // sort jets by pT
+ sort(jets.begin(), jets.end(), jets_pt_less);
+#ifdef DEBUG_SPLIT_MERGE
+ show();
+#endif
+
+ return jets.size();
+}
+
+
+
+// save the event on disk
+// - flux stream used to save jet contents
+//--------------------------------------------
+int Csplit_merge::save_contents(FILE *flux){
+ jet_iterator it_j;
+ Cjet *j1;
+ int i1, i2;
+
+ fprintf(flux, "# %d jets found\n", (int) jets.size());
+ fprintf(flux, "# columns are: eta, phi, pt and number of particles for each jet\n");
+ for (it_j = jets.begin(), i1=0 ; it_j != jets.end() ; it_j++, i1++){
+ j1 = &(*it_j);
+ j1->v.build_etaphi();
+ fprintf(flux, "%f\t%f\t%e\t%d\n",
+ j1->v.eta, j1->v.phi, j1->v.perp(), j1->n);
+ }
+
+ fprintf(flux, "# jet contents\n");
+ fprintf(flux, "# columns are: eta, phi, pt, particle index and jet number\n");
+ for (it_j = jets.begin(), i1=0 ; it_j != jets.end() ; it_j++, i1++){
+ j1 = &(*it_j);
+ for (i2=0;i2<j1->n;i2++)
+ fprintf(flux, "%f\t%f\t%e\t%d\t%d\n",
+ particles[j1->contents[i2]].eta, particles[j1->contents[i2]].phi,
+ particles[j1->contents[i2]].perp(), j1->contents[i2], i1);
+ }
+
+ return 0;
+}
+
+
+// show current jets/candidate status
+//------------------------------------
+int Csplit_merge::show(){
+ jet_iterator it_j;
+ cjet_iterator it_c;
+ Cjet *j;
+ const Cjet *c;
+ int i1, i2;
+
+ for (it_j = jets.begin(), i1=0 ; it_j != jets.end() ; it_j++, i1++){
+ j = &(*it_j);
+ fprintf(stdout, "jet %2d: %e\t%e\t%e\t%e\t", i1+1,
+ j->v.px, j->v.py, j->v.pz, j->v.E);
+ for (i2=0;i2<j->n;i2++)
+ fprintf(stdout, "%d ", j->contents[i2]);
+ fprintf(stdout, "\n");
+ }
+
+ for (it_c = candidates->begin(), i1=0 ; it_c != candidates->end() ; it_c++, i1++){
+ c = &(*it_c);
+ fprintf(stdout, "cdt %2d: %e\t%e\t%e\t%e\t%e\t", i1+1,
+ c->v.px, c->v.py, c->v.pz, c->v.E, sqrt(c->sm_var2));
+ for (i2=0;i2<c->n;i2++)
+ fprintf(stdout, "%d ", c->contents[i2]);
+ fprintf(stdout, "\n");
+ }
+
+ fprintf(stdout, "\n");
+ return 0;
+}
+
+
+// get the overlap between 2 jets
+// - j1 first jet
+// - j2 second jet
+// - overlap2 returned overlap^2 (determined by the choice of SM variable)
+// return true if overlapping, false if disjoint
+//---------------------------------------------------------------------
+bool Csplit_merge::get_overlap(const Cjet &j1, const Cjet &j2, double *overlap2){
+ // check if ranges overlap
+ if (!is_range_overlap(j1.range,j2.range))
+ return false;
+
+ int i1,i2;
+ bool is_overlap;
+
+ // initialise
+ i1=i2=idx_size=0;
+ is_overlap = false;
+ Cmomentum v;
+ double pt_tilde=0.0;
+
+ // compute overlap
+ // at the same time, we store union in indices
+ do{
+ if (j1.contents[i1]<j2.contents[i2]){
+ indices[idx_size] = j1.contents[i1];
+ i1++;
+ } else if (j1.contents[i1]>j2.contents[i2]){
+ indices[idx_size] = j2.contents[i2];
+ i2++;
+ } else { // (j1.contents[i1]==j2.contents[i2])
+ v += particles[j1.contents[i1]];
+ pt_tilde += pt[j1.contents[i1]];
+ indices[idx_size] = j1.contents[i1];
+ i1++;
+ i2++;
+ is_overlap = true;
+ }
+ idx_size++;
+ } while ((i1<j1.n) && (i2<j2.n));
+
+ // finish computing union
+ // (only needed if overlap !)
+ if (is_overlap){
+ while (i1<j1.n){
+ indices[idx_size] = j1.contents[i1];
+ i1++;
+ idx_size++;
+ }
+ while (i2<j2.n){
+ indices[idx_size] = j2.contents[i2];
+ i2++;
+ idx_size++;
+ }
+ }
+
+ // assign the overlapping var as return variable
+ (*overlap2) = get_sm_var2(v, pt_tilde);
+
+ return is_overlap;
+}
+
+
+
+// split the two given jet.
+// during this procedure, the jets j1 & j2 are replaced
+// by 2 new jets. Common particles are associted to the
+// closest initial jet.
+// - it_j1 iterator of the first jet in 'candidates'
+// - it_j2 iterator of the second jet in 'candidates'
+// - j1 first jet (Cjet instance)
+// - j2 second jet (Cjet instance)
+// return true on success, false on error
+////////////////////////////////////////////////////////////////
+bool Csplit_merge::split(cjet_iterator &it_j1, cjet_iterator &it_j2){
+ int i1, i2;
+ Cjet jet1, jet2;
+ double eta1, phi1, pt1_weight, eta2, phi2, pt2_weight;
+ double dx1, dy1, dx2, dy2;
+ Cmomentum tmp;
+ Cmomentum *v;
+
+ // shorthand to avoid having "->" all over the place
+ const Cjet & j1 = * it_j1;
+ const Cjet & j2 = * it_j2;
+
+ i1=i2=0;
+ jet2.v = jet1.v = Cmomentum();
+ jet2.pt_tilde = jet1.pt_tilde = 0.0;
+
+ // compute centroids
+ // When use_pt_weighted_splitting is activated, the
+ // "geometrical" distance is weighted by the inverse
+ // of the pt of the protojet
+ // This is stored in pt{1,2}_weight
+ tmp = j1.v;
+ tmp.build_etaphi();
+ eta1 = tmp.eta;
+ phi1 = tmp.phi;
+ pt1_weight = (use_pt_weighted_splitting) ? 1.0/tmp.perp2() : 1.0;
+
+ tmp = j2.v;
+ tmp.build_etaphi();
+ eta2 = tmp.eta;
+ phi2 = tmp.phi;
+ pt2_weight = (use_pt_weighted_splitting) ? 1.0/tmp.perp2() : 1.0;
+
+ jet1.v = jet2.v = Cmomentum();
+
+ // compute jet splitting
+ do{
+ if (j1.contents[i1]<j2.contents[i2]){
+ // particle i1 belong only to jet 1
+ v = &(particles[j1.contents[i1]]);
+ jet1.contents.push_back(j1.contents[i1]);
+ jet1.v += *v;
+ jet1.pt_tilde += pt[j1.contents[i1]];
+ i1++;
+ jet1.range.add_particle(v->eta,v->phi);
+ } else if (j1.contents[i1]>j2.contents[i2]){
+ // particle i2 belong only to jet 2
+ v = &(particles[j2.contents[i2]]);
+ jet2.contents.push_back(j2.contents[i2]);
+ jet2.v += *v;
+ jet2.pt_tilde += pt[j2.contents[i2]];
+ i2++;
+ jet2.range.add_particle(v->eta,v->phi);
+ } else { // (j1.contents[i1]==j2.contents[i2])
+ // common particle, decide which is the closest centre
+ v = &(particles[j1.contents[i1]]);
+
+ // distance w.r.t. centroid 1
+ dx1 = eta1 - v->eta;
+ dy1 = fabs(phi1 - v->phi);
+ if (dy1>M_PI)
+ dy1 -= twopi;
+
+ // distance w.r.t. centroid 2
+ dx2 = eta2 - v->eta;
+ dy2 = fabs(phi2 - v->phi);
+ if (dy2>M_PI)
+ dy2 -= twopi;
+
+ //? what when == ?
+ // When use_pt_weighted_splitting is activated, the
+ // "geometrical" distance is weighted by the inverse
+ // of the pt of the protojet
+ double d1sq = (dx1*dx1+dy1*dy1)*pt1_weight;
+ double d2sq = (dx2*dx2+dy2*dy2)*pt2_weight;
+ // do bookkeeping on most ambiguous split
+ if (fabs(d1sq-d2sq) < most_ambiguous_split)
+ most_ambiguous_split = fabs(d1sq-d2sq);
+
+ if (d1sq<d2sq){
+ // particle i1 belong only to jet 1
+ jet1.contents.push_back(j1.contents[i1]);
+ jet1.v += *v;
+ jet1.pt_tilde += pt[j1.contents[i1]];
+ jet1.range.add_particle(v->eta,v->phi);
+ } else {
+ // particle i2 belong only to jet 2
+ jet2.contents.push_back(j2.contents[i2]);
+ jet2.v += *v;
+ jet2.pt_tilde += pt[j2.contents[i2]];
+ jet2.range.add_particle(v->eta,v->phi);
+ }
+
+ i1++;
+ i2++;
+ }
+ } while ((i1<j1.n) && (i2<j2.n));
+
+ while (i1<j1.n){
+ v = &(particles[j1.contents[i1]]);
+ jet1.contents.push_back(j1.contents[i1]);
+ jet1.v += *v;
+ jet1.pt_tilde += pt[j1.contents[i1]];
+ i1++;
+ jet1.range.add_particle(v->eta,v->phi);
+ }
+ while (i2<j2.n){
+ v = &(particles[j2.contents[i2]]);
+ jet2.contents.push_back(j2.contents[i2]);
+ jet2.v += *v;
+ jet2.pt_tilde += pt[j2.contents[i2]];
+ i2++;
+ jet2.range.add_particle(v->eta,v->phi);
+ }
+
+ // finalise jets
+ jet1.n = jet1.contents.size();
+ jet2.n = jet2.contents.size();
+
+ //jet1.range = j1.range;
+ //jet2.range = j2.range;
+
+ // remove previous jets
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ cand_refs.erase(j1.v.ref);
+ cand_refs.erase(j2.v.ref);
+#endif
+ candidates->erase(it_j1);
+ candidates->erase(it_j2);
+
+ // reinsert new ones
+ insert(jet1);
+ insert(jet2);
+
+ return true;
+}
+
+// merge the two given jet.
+// during this procedure, the jets j1 & j2 are replaced
+// by 1 single jets containing both of them.
+// - it_j1 iterator of the first jet in 'candidates'
+// - it_j2 iterator of the second jet in 'candidates'
+// return true on success, false on error
+////////////////////////////////////////////////////////////////
+bool Csplit_merge::merge(cjet_iterator &it_j1, cjet_iterator &it_j2){
+ Cjet jet;
+ int i;
+
+ // build new jet
+ // note: particles within j1 & j2 have already been stored in indices
+ for (i=0;i<idx_size;i++){
+ jet.contents.push_back(indices[i]);
+ jet.v += particles[indices[i]];
+ jet.pt_tilde += pt[indices[i]];
+ }
+ jet.n = jet.contents.size();
+
+ // deal with ranges
+ jet.range = range_union(it_j1->range, it_j2->range);
+
+ // remove old candidates
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ if (merge_identical_protocones){
+ cand_refs.erase(it_j1->v.ref);
+ cand_refs.erase(it_j2->v.ref);
+ }
+#endif
+ candidates->erase(it_j1);
+ candidates->erase(it_j2);
+
+ // reinsert new candidate
+ insert(jet);
+
+ return true;
+}
+
+/**
+ * Check whether or not a jet has to be inserted in the
+ * list of protojets. If it has, set its sm_variable and
+ * insert it to the list of protojets.
+ */
+bool Csplit_merge::insert(Cjet &jet){
+
+ // eventually check that no other candidate are present with the
+ // same cone contents. We recall that this automatic merging of
+ // identical protocones can lead to infrared-unsafe situations.
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ if ((merge_identical_protocones) && (!cand_refs.insert(jet.v.ref).second))
+ return false;
+#endif
+
+ // check that the protojet has large enough pt
+ if (jet.v.perp2()<pt_min2)
+ return false;
+
+ // assign SM variable
+ jet.sm_var2 = get_sm_var2(jet.v, jet.pt_tilde);
+
+ // insert the jet.
+ candidates->insert(jet);
+
+ return true;
+}
+
+/**
+ * given a 4-momentum and its associated pT, return the
+ * variable that has to be used for SM
+ * \param v 4 momentum of the protojet
+ * \param pt_tilde pt_tilde of the protojet
+ */
+double Csplit_merge::get_sm_var2(Cmomentum &v, double &pt_tilde){
+ switch(ptcomparison.split_merge_scale) {
+ case SM_pt: return v.perp2();
+ case SM_mt: return v.perpmass2();
+ case SM_pttilde: return pt_tilde*pt_tilde;
+ case SM_Et: return v.Et2();
+ default:
+ throw Csiscone_error("Unsupported split-merge scale choice: "
+ + ptcomparison.SM_scale_name());
+ }
+
+ //return 0.0;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/split_merge.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/geom_2d.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/geom_2d.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/geom_2d.cpp (revision 420)
@@ -0,0 +1,150 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: geom_2d.cpp //
+// Description: source file for two-dimensional geometry tools //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "geom_2d.h"
+#include <algorithm>
+
+namespace siscone{
+
+#define PHI_RANGE_MASK 0xFFFFFFFF
+
+/*********************************************************
+ * class Ceta_phi_range implementation *
+ * class for holding a covering range in eta-phi *
+ * *
+ * This class deals with ranges in the eta-phi plane. It *
+ * implements methods to test if two ranges overlap and *
+ * to take the union of two overlapping intervals. *
+ *********************************************************/
+
+using namespace std;
+
+// static member default init
+//----------------------------
+double Ceta_phi_range::eta_min = -100.0;
+double Ceta_phi_range::eta_max = 100.0;
+
+// default ctor
+//--------------
+Ceta_phi_range::Ceta_phi_range(){
+ eta_range = 0;
+ phi_range = 0;
+}
+
+// ctor with initialisation
+// we initialise with a centre (in eta,phi) and a radius
+// - c_eta eta coordinate of the centre
+// - c_phi phi coordinate of the centre
+// - R radius
+//-------------------------------------------------------
+Ceta_phi_range::Ceta_phi_range(double c_eta, double c_phi, double R){
+ // determination of the eta range
+ //-------------------------------
+ double xmin = max(c_eta-R,eta_min+0.0001);
+ double xmax = min(c_eta+R,eta_max-0.0001);
+
+ unsigned int cell_min = get_eta_cell(xmin);
+ unsigned int cell_max = get_eta_cell(xmax);
+
+ // warning: if cell_max==2^31, 2*cell_max==0 hence,
+ // even if the next formula is formally (2*cell_max-cell_min),
+ // expressing it as (cell_max-cell_min)+cell_max is safe.
+ eta_range = (cell_max-cell_min)+cell_max;
+
+ // determination of the phi range
+ // !! taking care of periodicity !!
+ //---------------------------------
+ xmin = phi_in_range(c_phi-R);
+ xmax = phi_in_range(c_phi+R);
+
+ cell_min = get_phi_cell(xmin);
+ cell_max = get_phi_cell(xmax);
+
+ // Also, if the interval goes through pi, inversion is needed
+ if (xmax>xmin)
+ phi_range = (cell_max-cell_min)+cell_max;
+ else {
+ phi_range = (cell_min==cell_max)
+ ? PHI_RANGE_MASK
+ : ((PHI_RANGE_MASK^(cell_min-cell_max)) + cell_max);
+ }
+}
+
+// assignment of range
+// - r range to assign to current one
+//---------------------------------------
+Ceta_phi_range& Ceta_phi_range::operator = (const Ceta_phi_range &r){
+ eta_range = r.eta_range;
+ phi_range = r.phi_range;
+
+ return *this;
+}
+
+// add a particle to the range
+// - eta eta coordinate of the particle
+// - phi phi coordinate of the particle
+// \return 0 on success, 1 on error
+//----------------------------------------
+int Ceta_phi_range::add_particle(const double eta, const double phi){
+ // deal with the eta coordinate
+ eta_range |= get_eta_cell(eta);
+
+ // deal with the phi coordinate
+ phi_range |= get_phi_cell(phi);
+
+ return 0;
+}
+
+
+// test overlap
+// - r1 first range
+// - r2 second range
+// return true if overlap, false otherwise.
+//------------------------------------------
+bool is_range_overlap(const Ceta_phi_range &r1, const Ceta_phi_range &r2){
+ // check overlap in eta AND phi
+ return ((r1.eta_range & r2.eta_range) && (r1.phi_range & r2.phi_range));
+}
+
+// compute union
+// Note: we assume that the two intervals overlap
+// - r1 first range
+// - r2 second range
+// \return union of the two ranges
+//------------------------------------------
+const Ceta_phi_range range_union (const Ceta_phi_range &r1, const Ceta_phi_range &r2){
+ Ceta_phi_range tmp;
+
+ // compute union in eta
+ tmp.eta_range = r1.eta_range | r2.eta_range;
+
+ // compute union in phi
+ tmp.phi_range = r1.phi_range | r2.phi_range;
+
+ return tmp;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/geom_2d.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Revision
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/circulator.h
===================================================================
--- tags/siscone-3.0.4/siscone/circulator.h (revision 0)
+++ tags/siscone-3.0.4/siscone/circulator.h (revision 420)
@@ -0,0 +1,90 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: circulator.h //
+// Description: header file for circulator (circulator class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: 103 $//
+// $Date:: 2007-02-18 17:07:34 +0100 (Sun, 18 Feb 2007) $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __CIRCULATOR_H__
+#define __CIRCULATOR_H__
+
+namespace siscone{
+
+/// \class circulator
+/// a circulator that is foreseen to take as template member either a
+/// pointer or an iterator;
+template<class T> class circulator {
+
+public:
+ /// ctor with iniitalisation from iterators
+ /// \param here the current position
+ /// \param begin the first position
+ /// \param end the last position
+ inline circulator(T here, T begin, T end) : m_here(here), m_begin(begin), m_end(end) {}
+
+ /// copy ctor
+ /// \param other the circulator to copy
+ inline circulator(const circulator<T> & other) : m_here(other.m_here), m_begin(other.m_begin), m_end(other.m_end) {}
+
+ /// set just the position without resetting the begin and end elements
+ /// \param other the circulator to grab position from
+ void set_position(const circulator<T> & other) {m_here = other.m_here;}
+
+ /// set just the position without resetting the begin and end elements
+ /// \param pointer the iterator to use as the new position
+ void set_position(T pointer) {m_here = pointer;}
+
+ /// get the current object
+ T operator()() {return m_here;}
+
+ /// position incrementation
+ inline circulator<T> & operator++() {
+ ++m_here;
+ if (m_here == m_end) m_here = m_begin;
+ return *this;
+ }
+
+ /// position decrementation
+ inline circulator<T> & operator--() {
+ if (m_here == m_begin) m_here = m_end;
+ --m_here;
+ return *this;
+ }
+
+ /// check if the current elements are the same
+ /// NB: for efficiency, this checks only the here element
+ /// \param other the circulator to compare to the current one
+ bool operator==(const circulator & other) const {return m_here == other.m_here;}
+
+ /// check if the current elements are different
+ /// NB: for efficiency, this checks only the here element
+ /// \param other the circulator to compare to the current one
+ bool operator!=(const circulator & other) const {return m_here != other.m_here;}
+
+private:
+ T m_here, m_begin, m_end; ///< the current, beginning and ending iterators/pointers
+};
+
+}
+
+#endif // __CIRCULATOR_H__
Index: tags/siscone-3.0.4/siscone/siscone_error.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/siscone_error.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/siscone_error.cpp (revision 420)
@@ -0,0 +1,33 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: siscone_error.cpp //
+// Description: source file for SISCone error messages (Csiscone_error) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "siscone_error.h"
+
+namespace siscone{
+
+bool Csiscone_error::m_print_errors = true;
+
+}
Property changes on: tags/siscone-3.0.4/siscone/siscone_error.cpp
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Index: tags/siscone-3.0.4/siscone/area.h
===================================================================
--- tags/siscone-3.0.4/siscone/area.h (revision 0)
+++ tags/siscone-3.0.4/siscone/area.h (revision 420)
@@ -0,0 +1,139 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: area.h //
+// Description: header file for the computation of jet area //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: 149 $//
+// $Date:: 2007-03-15 00:13:58 +0100 (Thu, 15 Mar 2007) $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SISCONE_AREA_H__
+#define __SISCONE_AREA_H__
+
+#include "momentum.h"
+#include "siscone.h"
+
+namespace siscone{
+
+/**
+ * \class Cjet_area
+ * real Jet information, including its area(s)
+ *
+ * This class contains information for one single jet.
+ * That is, first, its momentum carrying information
+ * about its centre and pT, and second, its particle
+ * contents.
+ * Compared to the Cjet class, it also includes the
+ * passive and active areas of the jet computed using
+ * the Carea class.
+ */
+class Cjet_area : public Cjet{
+ public:
+ /// default ctor
+ Cjet_area();
+
+ /// jet-initialised ctor
+ Cjet_area(Cjet &j);
+
+ /// default dtor
+ ~Cjet_area();
+
+ // area information
+ double passive_area; ///< passive area
+ double active_area; ///< active area
+};
+
+/**
+ * \class Carea
+ * class for the computation of jet areas.
+ *
+ * This is the class user should use whenever you want to compute
+ * the jet area (passive and active). .
+ * It uses the SISCone algorithm to perform the jet analysis.
+ */
+class Carea : public Csiscone{
+ public:
+ /// default ctor
+ Carea();
+
+ /// default dtor
+ ~Carea();
+
+ /**
+ * compute the jet areas from a given particle set.
+ * The parameters of this method are the ones which control the jet clustering alghorithn.
+ * Note that the pt_min is not allowed here soince the jet-area determination involves soft
+ * particles/jets and thus is used internally.
+ * \param _particles list of particles
+ * \param _radius cone radius
+ * \param _f shared energy threshold for splitting&merging
+ * \param _n_pass_max maximum number of passes (0=full search, the default)
+ * \param _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: SM_pt leads to IR unsafety for some events with momentum conservation.
+ * SM_Et is IR safe but not boost invariant and not implemented(!)
+ * SM_mt is IR safe for hadronic events, but not for decays of two
+ * back-to-back particles of identical mass
+ * SM_pttilde
+ * is always IR safe, and also boost invariant (default)
+ * \param _hard_only when this is set on, only hard jets are computed
+ * and not the purely ghosted jets (default: false)
+ * \return the number of jets (including pure-ghost ones if they are included)
+ */
+ int compute_areas(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max=0, Esplit_merge_scale _split_merge_scale=SM_pttilde,
+ bool _hard_only=false);
+
+ /**
+ * compute the jet active areas from a given particle set.
+ * The parameters of this method are the ones which control the jet clustering alghorithn.
+ * Note that the pt_min is not allowed here soince the jet-area determination involves soft
+ * particles/jets and thus is used internally.
+ * See compute_areas for paramters definition.
+ * \return the number of jets (including pure-ghost ones if they are included)
+ */
+ int compute_active_areas(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max=0, Esplit_merge_scale _split_merge_scale=SM_pttilde,
+ bool _hard_only=false);
+
+ /**
+ * compute the jet passive areas from a given particle set.
+ * The parameters of this method are the ones which control the jet clustering alghorithn.
+ * Note that the pt_min is not allowed here soince the jet-area determination involves soft
+ * particles/jets and thus is used internally.
+ * See compute_areas for paramters definition.
+ */
+ int compute_passive_areas(std::vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max=0, Esplit_merge_scale _split_merge_scale=SM_pttilde);
+
+ int grid_size; ///< size of the grid we add soft particles on (N_soft=(grid_size^2))
+ double grid_eta_max; ///< maximal value of eta we add soft particles on
+ double grid_shift; ///< fractional (random) displacement of the points om the grid
+
+ double pt_soft; ///< pt of the soft particles added
+ double pt_shift; ///< amplitude of the pt random shift
+ double pt_soft_min; ///< pt_min used in SM to compute passive areas
+
+ /// jets with their areas
+ std::vector<Cjet_area> jet_areas;
+};
+
+}
+#endif
Index: tags/siscone-3.0.4/siscone/ranlux.h
===================================================================
--- tags/siscone-3.0.4/siscone/ranlux.h (revision 0)
+++ tags/siscone-3.0.4/siscone/ranlux.h (revision 420)
@@ -0,0 +1,49 @@
+//! \file ranlux.h
+
+#ifndef __RANLUX_H__
+#define __RANLUX_H__
+
+/* This is a lagged fibonacci generator with skipping developed by Luescher.
+ The sequence is a series of 24-bit integers, x_n,
+
+ x_n = d_n + b_n
+
+ where d_n = x_{n-10} - x_{n-24} - c_{n-1}, b_n = 0 if d_n >= 0 and
+ b_n = 2^24 if d_n < 0, c_n = 0 if d_n >= 0 and c_n = 1 if d_n < 0,
+ where after 24 samples a group of p integers are "skipped", to
+ reduce correlations. By default p = 199, but can be increased to
+ 365.
+
+ The period of the generator is around 10^171.
+
+ From: M. Luescher, "A portable high-quality random number generator
+ for lattice field theory calculations", Computer Physics
+ Communications, 79 (1994) 100-110.
+
+ Available on the net as hep-lat/9309020 at http://xxx.lanl.gov/
+
+ See also,
+
+ F. James, "RANLUX: A Fortran implementation of the high-quality
+ pseudo-random number generator of Luscher", Computer Physics
+ Communications, 79 (1994) 111-114
+
+ Kenneth G. Hamilton, F. James, "Acceleration of RANLUX", Computer
+ Physics Communications, 101 (1997) 241-248
+
+ Kenneth G. Hamilton, "Assembler RANLUX for PCs", Computer Physics
+ Communications, 101 (1997) 249-253 */
+
+namespace siscone{
+
+/// initialize 'ranlux' generator
+void ranlux_init();
+
+/// generate random value (24 bits)
+unsigned long int ranlux_get();
+
+/// save state of the generator
+void ranlux_print_state();
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/ranlux.h
___________________________________________________________________
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+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/quadtree.h
===================================================================
--- tags/siscone-3.0.4/siscone/quadtree.h (revision 0)
+++ tags/siscone-3.0.4/siscone/quadtree.h (revision 420)
@@ -0,0 +1,124 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: quadtree.h //
+// Description: header file for quadtree management (Cquadtree class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __QUADTREE_H__
+#define __QUADTREE_H__
+
+#include "momentum.h"
+#include <stdio.h>
+
+namespace siscone{
+
+/**
+ * \class Cquadtree
+ * \brief Implementation of a 2D quadtree.
+ *
+ * This class implements the traditional two-dimensional quadtree.
+ * The elements at each node are of 'Cmomentum' type.
+ */
+class Cquadtree{
+ public:
+ /// default ctor
+ Cquadtree();
+
+ /// ctor with initialisation (see init for details)
+ Cquadtree(double _x, double _y, double _half_size_x, double _half_size_y);
+
+ /// default destructor
+ /// at destruction, everything is destroyed except
+ /// physical values at the leaves
+ ~Cquadtree();
+
+ /**
+ * init the tree.
+ * By initializing the tree, we mean setting the cell parameters
+ * and preparing the object to act as a seed for a new tree.
+ * \param _x x-position of the center
+ * \param _y y-position of the center
+ * \param _half_size_x x-size of the cell
+ * \param _half_size_y y-size of the cell
+ * \return 0 on success, 1 on error. Note that if the cell or its
+ * parent is already filled, we return an error.
+ */
+ int init(double _x, double _y, double _half_size_x, double _half_size_y);
+
+ /**
+ * adding a particle to the tree.
+ * This method adds one vector to the quadtree structure which
+ * is updated consequently.
+ * \param v_add vector to add
+ * \return 0 on success 1 on error
+ */
+ int add(Cmomentum *v_add);
+
+ /**
+ * circle intersection.
+ * computes the intersection with a circle of given centre and radius.
+ * The output takes the form of a quadtree with all squares included
+ * in the circle.
+ * \param cx circle centre x coordinate
+ * \param cy circle centre y coordinate
+ * \param cR2 circle radius SQUARED
+ * \return the checksum for that intersection
+ */
+ Creference circle_intersect(double cx, double cy, double cR2);
+
+ /**
+ * output a data file for drawing the grid.
+ * This can be used to output a data file containing all the
+ * grid subdivisions. The file contents is as follows:
+ * first and second columns give center of the cell, the third
+ * gives the size.
+ * \param flux opened stream to write to
+ * \return 0 on success, 1 on error
+ */
+ int save(FILE *flux);
+
+ /**
+ * output a data file for drawing the tree leaves.
+ * This can be used to output a data file containing all the
+ * tree leaves. The file contents is as follows:
+ * first and second columns give center of the cell, the third
+ * gives the size.
+ * \param flux opened stream to write to
+ * \return 0 on success, 1 on error
+ */
+ int save_leaves(FILE *flux);
+
+ double centre_x; ///< x-position of the centre of the cell
+ double centre_y; ///< y-position of the centre of the cell
+ double half_size_x; ///< HALF size of the cell
+ double half_size_y; ///< HALF size of the cell
+
+ Cmomentum *v; ///< physical contents
+
+ Cquadtree* children[2][2]; ///< sub-cells ( 0,1->left-right; 0,1->bottom,top)
+ bool has_child; ///< true if not a leaf
+};
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/quadtree.h
___________________________________________________________________
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\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/split_merge.h
===================================================================
--- tags/siscone-3.0.4/siscone/split_merge.h (revision 0)
+++ tags/siscone-3.0.4/siscone/split_merge.h (revision 420)
@@ -0,0 +1,477 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: split_merge.h //
+// Description: header file for splitting/merging (contains the CJet class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPLIT_MERGE_H__
+#define __SPLIT_MERGE_H__
+
+#include <siscone/config.h>
+#include "defines.h"
+#include "geom_2d.h"
+#include "momentum.h"
+#include <stdio.h>
+#include <vector>
+#include <set>
+#include <memory>
+#include <string>
+
+namespace siscone{
+
+const int CJET_INEXISTENT_PASS = -2;
+
+/**
+ * \class Cjet
+ * real Jet information.
+ *
+ * This class contains information for one single jet.
+ * That is, first, its momentum carrying information
+ * about its centre and pT, and second, its particle
+ * contents
+ */
+class Cjet{
+ public:
+ /// default ctor
+ Cjet();
+
+ /// default dtor
+ ~Cjet();
+
+ Cmomentum v; ///< jet momentum
+ double pt_tilde; ///< p-scheme pt
+ int n; ///< number of particles inside
+ std::vector<int> contents; ///< particle contents (list of indices)
+
+ /// ordering variable used for ordering and overlap in the
+ /// split--merge. This variable is automatically set either to
+ /// pt_tilde, or to mt or to pt, depending on the siscone
+ /// parameter. Note that the default behaviour is pt_tilde and that
+ /// other chices may lead to infrared unsafe situations.
+ /// Note: we use the square of the varible rather than the variable itself
+ double sm_var2;
+
+ /// covered range in eta-phi
+ Ceta_phi_range range;
+
+ /// pass at which the jet has been found
+ /// It starts at 0 (first pass), -1 means infinite rapidity
+ /// (it will be initialised to "CJET_INEXISTENT_PASS" which should
+ /// never appear after clustering)
+ int pass;
+};
+
+/// ordering of jets in pt (e.g. used in final jets ordering)
+bool jets_pt_less(const Cjet &j1, const Cjet &j2);
+
+
+/// the choices of scale variable that can be used in the split-merge
+/// step, both for ordering the protojets and for measuing their
+/// overlap; pt, Et and mt=sqrt(pt^2+m^2) are all defined in E-scheme
+/// (4-momentum) recombination; pttilde = \sum_{i\in jet} |p_{t,i}|
+///
+/// NB: if one changes the order here, one _MUST_ also change the order
+/// in the SISCone plugin
+enum Esplit_merge_scale {
+ SM_pt, ///< transverse momentum (E-scheme), IR unsafe
+ SM_Et, ///< transverse energy (E-scheme), not long. boost inv.
+ ///< original run-II choice [may not be implemented]
+ SM_mt, ///< transverse mass (E-scheme), IR safe except
+ ///< in decays of two identical narrow heavy particles
+ SM_pttilde ///< pt-scheme pt = \sum_{i in jet} |p_{ti}|, should
+ ///< be IR safe in all cases
+};
+
+/// return the name of the split-merge scale choice
+std::string split_merge_scale_name(Esplit_merge_scale sms);
+
+/**
+ * \class Csplit_merge_ptcomparison
+ * comparison of jets for split--merge ordering
+ *
+ * a class that allows us to carry out comparisons of pt of jets, using
+ * information from exact particle contents where necessary.
+ */
+class Csplit_merge_ptcomparison{
+public:
+ /// default ctor
+ Csplit_merge_ptcomparison() :
+ particles(0), split_merge_scale(SM_pttilde){};
+
+ /// return the name corresponding to the SM scale variable
+ std::string SM_scale_name() const {
+ return split_merge_scale_name(split_merge_scale);}
+
+ std::vector<Cmomentum> * particles; ///< pointer to the list of particles
+ std::vector<double> * pt; ///< pointer to the pt of the particles
+
+ /// comparison between 2 jets
+ bool operator()(const Cjet &jet1, const Cjet &jet2) const;
+
+ /**
+ * get the difference between 2 jets, calculated such that rounding
+ * errors will not affect the result even if the two jets have
+ * almost the same content (so that the difference is below the
+ * rounding errors)
+ *
+ * \param j1 first jet
+ * \param j2 second jet
+ * \param v jet1-jet2
+ * \param pt_tilde jet1-jet2 pt_tilde
+ */
+ void get_difference(const Cjet &j1, const Cjet &j2, Cmomentum *v, double *pt_tilde) const;
+
+ /// the following parameter controls the variable we're using for
+ /// the split-merge process i.e. the variable we use for
+ /// 1. ordering jet candidates;
+ /// 2. computing the overlap fraction of two candidates.
+ /// The default value uses pttile (p-scheme pt). Other alternatives are
+ /// pt, mt=sqrt(pt^2+m^2)=sqrt(E^2-pz^2) or Et.
+ /// NOTE: Modifying the default choice can have nasty effects:
+ /// - using pt leads to some IR unsafety when we have two jets,
+ /// e.g. back-to-back, with the same pt. In that case, their ordering
+ /// in pt is random and can be affected by the addition of a
+ /// soft particle. Hence, we highly recommand to keep this to
+ /// the default value i.e. to use pt only for the purpose of
+ /// investigating the IR issue
+ /// - using Et is safe but does not respect boost invariance
+ /// - using mt solves the IR unsafety issues with the pt variable
+ /// for QCD jets but the IR unsafety remains for nack-to-back
+ /// jets of unstable narrow-width particles (e.g. Higgs).
+ /// Therefore, keeping the default value is strongly advised.
+ Esplit_merge_scale split_merge_scale;
+};
+
+
+// iterator types
+/// iterator definition for the jet candidates structure
+typedef std::multiset<siscone::Cjet,Csplit_merge_ptcomparison>::iterator cjet_iterator;
+
+/// iterator definition for the jet structure
+typedef std::vector<siscone::Cjet>::iterator jet_iterator;
+
+
+
+/**
+ * \class Csplit_merge
+ * Class used to split and merge jets.
+ */
+class Csplit_merge{
+ public:
+ /// default ctor
+ Csplit_merge();
+
+ /// default dtor
+ ~Csplit_merge();
+
+
+ //////////////////////////////
+ // initialisation functions //
+ //////////////////////////////
+
+ /**
+ * initialisation function
+ * \param _particles list of particles
+ * \param protocones list of protocones (initial jet candidates)
+ * \param R2 cone radius (squared)
+ * \param ptmin minimal pT allowed for jets
+ * \return 0 on success, 1 on error
+ */
+ int init(std::vector<Cmomentum> &_particles, std::vector<Cmomentum> *protocones, double R2, double ptmin=0.0);
+
+ /**
+ * initialisation function for particle list
+ * \param _particles list of particles
+ * \return 0 on success, 1 on error
+ */
+ int init_particles(std::vector<Cmomentum> &_particles);
+
+ /**
+ * build initial list of left particles
+ */
+ int init_pleft();
+
+ /**
+ * use a pt-dependent boundary for splitting
+ * When called with true, the criterium for splitting two protojets
+ * will be to compare D1^2/kt1^2 vs. D2^2/kt2^2, the (anti-)kt-weighted
+ * distance instead of the plain distance D1^2 vs. D2^2.
+ * This can be set in order to produce more circular hard jets,
+ * with the same underlying philosophy as for the anti-kt algorithm.
+ * We thus expect a behaviour closer to the IterativeCone one.
+ * By default, we use the standard D1^2 vs. D2^2 comparison and this
+ * function is not called.
+ */
+ inline int set_pt_weighted_splitting(bool _use_pt_weighted_splitting){
+ use_pt_weighted_splitting = _use_pt_weighted_splitting;
+ return 0;
+ }
+
+ ////////////////////////
+ // cleaning functions //
+ ////////////////////////
+
+ /// partial clearance
+ int partial_clear();
+
+ /// full clearance
+ int full_clear();
+
+ ///////////////////////////////////////
+ // user-defined stable-cone ordering //
+ ///////////////////////////////////////
+
+ /// \class Cuser_scale_base
+ /// base class for user-defined ordering of stable cones
+ ///
+ /// derived classes have to implement the () operator that returns
+ /// the scale associated with a given jet.
+ class Cuser_scale_base{
+ public:
+ /// empty virtual dtor
+ virtual ~Cuser_scale_base(){}
+
+ /// the scale associated with a given jet
+ ///
+ /// "progressive removal" iteratively removes the stable cone with
+ /// the largest scale
+ virtual double operator()(const Cjet & jet) const = 0;
+
+ /// returns true when the scale associated with jet a is larger than
+ /// the scale associated with jet b
+ ///
+ /// By default this does a simple direct comparison but it can be
+ /// overloaded for higher precision [recommended if possible]
+ ///
+ /// This function assumes that a.sm_var2 and b.sm_var2 have been
+ /// correctly initialised with the signed squared output of
+ /// operator(), as is by default the case when is_larger is called
+ /// from within siscone.
+ virtual bool is_larger(const Cjet & a, const Cjet & b) const{
+ return (a.sm_var2 > b.sm_var2);
+ }
+ };
+
+ /// associate a user-defined scale to order the stable cones
+ ///
+ /// Note that this is only used in "progressive-removal mode",
+ /// e.g. in add_hardest_protocone_to_jets().
+ void set_user_scale(const Cuser_scale_base * user_scale_in){
+ _user_scale = user_scale_in;
+ }
+
+ /// return the user-defined scale (NULL if none)
+ const Cuser_scale_base * user_scale() const { return _user_scale; }
+
+
+ /////////////////////////////////
+ // main parts of the algorithm //
+ /////////////////////////////////
+
+ /**
+ * build the list 'p_uncol_hard' from p_remain by clustering
+ * collinear particles and removing particles softer than
+ * stable_cone_soft_pt2_cutoff
+ * note that thins in only used for stable-cone detection
+ * so the parent_index field is unnecessary
+ */
+ int merge_collinear_and_remove_soft();
+
+ /**
+ * add a list of protocones
+ * \param protocones list of protocones (initial jet candidates)
+ * \param R2 cone radius (squared)
+ * \param ptmin minimal pT allowed for jets
+ * \return 0 on success, 1 on error
+ */
+ int add_protocones(std::vector<Cmomentum> *protocones, double R2, double ptmin=0.0);
+
+ /**
+ * remove the hardest protocone and declare it a jet
+ * \param protocones list of protocones (initial jet candidates)
+ * \param R2 cone radius (squared)
+ * \param ptmin minimal pT allowed for jets
+ * \return 0 on success, 1 on error
+ *
+ * The list of remaining particles (and the uncollinear-hard ones)
+ * is updated.
+ */
+ int add_hardest_protocone_to_jets(std::vector<Cmomentum> *protocones, double R2, double ptmin=0.0);
+
+ /**
+ * really do the splitting and merging
+ * At the end, the vector jets is filled with the jets found.
+ * the 'contents' field of each jets contains the indices
+ * of the particles included in that jet.
+ * \param overlap_tshold threshold for splitting/merging transition
+ * \param ptmin minimal pT allowed for jets
+ * \return the number of jets is returned
+ */
+ int perform(double overlap_tshold, double ptmin=0.0);
+
+
+ //////////////////////////////
+ // save and debug functions //
+ //////////////////////////////
+
+ /// save final jets
+ /// \param flux stream to save the jet contentss
+ int save_contents(FILE *flux);
+
+ /// show jets/candidates status
+ int show();
+
+ // particle information
+ int n; ///< number of particles
+ std::vector<Cmomentum> particles; ///< list of particles
+ std::vector<double> pt; ///< list of particles' pt
+ int n_left; ///< numer of particles that does not belong to any jet
+ std::vector<Cmomentum> p_remain; ///< list of particles remaining to deal with
+ std::vector<Cmomentum> p_uncol_hard; ///< list of particles remaining with collinear clustering
+ int n_pass; ///< index of the run
+
+ /// minimal difference in squared distance between a particle and
+ /// two overlapping protojets when doing a split (useful when
+ /// testing approx. collinear safety)
+ double most_ambiguous_split;
+
+ // jets information
+ std::vector<Cjet> jets; ///< list of jets
+
+ // working entries
+ int *indices; ///< maximal size array for indices works
+ int idx_size; ///< number of elements in indices1
+
+ /// The following flag indicates that identical protocones
+ /// are to be merged automatically each time around the split-merge
+ /// loop and before anything else happens.
+ ///
+ /// This flag is only effective if ALLOW_MERGE_IDENTICAL_PROTOCONES
+ /// is set in 'defines.h'
+ /// Note that this lead to infrared-unsafety so it is disabled
+ /// by default
+ bool merge_identical_protocones;
+
+ /// member used for detailed comparisons of pt's
+ Csplit_merge_ptcomparison ptcomparison;
+
+ /// stop split--merge or progressive-removal when the squared SM_var
+ /// of the hardest protojet is below this cut-off. Note that this is
+ /// a signed square (ie SM_var*|SM_var|) to be able to handle
+ /// negative values.
+ ///
+ /// Note that the cut-off is set on the variable squared.
+ double SM_var2_hardest_cut_off;
+
+ /// pt cutoff for the particles to put in p_uncol_hard
+ /// this is meant to allow removing soft particles in the
+ /// stable-cone search.
+ ///
+ /// This is not collinear-safe so you should not use this
+ /// variable unless you really know what you are doing
+ /// Note that the cut-off is set on the variable squared.
+ double stable_cone_soft_pt2_cutoff;
+
+ private:
+ /**
+ * get the overlap between 2 jets
+ * \param j1 first jet
+ * \param j2 second jet
+ * \param v returned overlap^2 (determined by the choice of SM variable)
+ * \return true if overlapping, false if disjoint
+ */
+ bool get_overlap(const Cjet &j1, const Cjet &j2, double *v);
+
+
+ /**
+ * split the two given jets.
+ * during this procedure, the jets j1 & j2 are replaced
+ * by 2 new jets. Common particles are associted to the
+ * closest initial jet.
+ * \param it_j1 iterator of the first jet in 'candidates'
+ * \param it_j2 iterator of the second jet in 'candidates'
+ * \param j1 first jet (Cjet instance)
+ * \param j2 second jet (Cjet instance)
+ * \return true on success, false on error
+ */
+ bool split(cjet_iterator &it_j1, cjet_iterator &it_j2);
+
+ /**
+ * merge the two given jet.
+ * during this procedure, the jets j1 & j2 are replaced
+ * by 1 single jets containing both of them.
+ * \param it_j1 iterator of the first jet in 'candidates'
+ * \param it_j2 iterator of the second jet in 'candidates'
+ * \return true on success, false on error
+ */
+ bool merge(cjet_iterator &it_j1, cjet_iterator &it_j2);
+
+ /**
+ * Check whether or not a jet has to be inserted in the
+ * list of protojets. If it has, set its sm_variable and
+ * insert it to the list of protojets.
+ * \param jet jet to insert
+ */
+ bool insert(Cjet &jet);
+
+ /**
+ * given a 4-momentum and its associated pT, return the
+ * variable tht has to be used for SM
+ * \param v 4 momentum of the protojet
+ * \param pt_tilde pt_tilde of the protojet
+ */
+ double get_sm_var2(Cmomentum &v, double &pt_tilde);
+
+ // jet information
+ /// list of jet candidates
+#ifdef SISCONE_USES_UNIQUE_PTR_AS_AUTO_PTR
+ std::unique_ptr<std::multiset<Cjet,Csplit_merge_ptcomparison> > candidates;
+#else
+ std::auto_ptr<std::multiset<Cjet,Csplit_merge_ptcomparison> > candidates;
+#endif
+
+ /// minimal pt2
+ double pt_min2;
+
+ /**
+ * do we have or not to use the pt-weighted splitting
+ * (see description for set_pt_weighted_splitting)
+ * This will be false by default
+ */
+ bool use_pt_weighted_splitting;
+
+ /// use a user-defined scale to order the stable cones and jet
+ /// candidates
+ const Cuser_scale_base *_user_scale;
+
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ /// checkxor for the candidates (to avoid having twice the same contents)
+ std::set<Creference> cand_refs;
+#endif
+};
+
+}
+
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/split_merge.h
___________________________________________________________________
Added: svn:keywords
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+Date Rev
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Index: tags/siscone-3.0.4/siscone/geom_2d.h
===================================================================
--- tags/siscone-3.0.4/siscone/geom_2d.h (revision 0)
+++ tags/siscone-3.0.4/siscone/geom_2d.h (revision 420)
@@ -0,0 +1,179 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: geom_2d.h //
+// Description: header file for two-dimensional geometry tools //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __GEOM_2D_H__
+#define __GEOM_2D_H__
+
+#include <iostream>
+#include <math.h>
+#include "defines.h"
+
+#ifndef M_PI
+#define M_PI 3.141592653589793238462643383279502884197
+#endif
+
+namespace siscone{
+
+/// return a result that corresponds to phi, but in the
+/// range (-pi..pi]; the result is only correct if -3pi < phi <= 3pi
+inline double phi_in_range(double phi) {
+ if (phi <= -M_PI) phi += twopi;
+ else if (phi > M_PI) phi -= twopi;
+ return phi;
+}
+
+/// return the difference between the two phi values,
+/// placed in the correct range (-pi..pi], , assuming that phi1,phi2
+/// are already in the correct range.
+inline double dphi(double phi1, double phi2) {
+ return phi_in_range(phi1-phi2);
+}
+
+
+/// return the absolute difference between the two phi values,
+/// placed in the correct range, assuming that phi1,phi2 are already
+/// in the correct range.
+inline double abs_dphi(double phi1, double phi2) {
+ double delta = fabs(phi1-phi2);
+ return delta > M_PI ? twopi-delta : delta;
+}
+
+/// return the square of the argument
+inline double pow2(double x) {return x*x;}
+
+
+/**
+ * \class Ctwovect
+ * \brief class for holding a two-vector
+ */
+class Ctwovect {
+public:
+ /// default ctor
+ Ctwovect() : x(0.0), y(0.0) {}
+
+ /// ctor with initialisation
+ /// \param _x first coordinate
+ /// \param _y second coordinate
+ Ctwovect(double _x, double _y) : x(_x), y(_y) {}
+
+ /// vector coordinates
+ double x, y;
+
+ /// norm (modulud square) of the vector
+ inline double mod2() const {return pow2(x)+pow2(y);}
+
+ /// modulus of the vector
+ inline double modulus() const {return sqrt(mod2());}
+};
+
+
+/// dot product of two 2-vectors
+/// \param a first 2-vect
+/// \param b second 2-vect
+/// \return a.b is returned
+inline double dot_product(const Ctwovect & a, const Ctwovect & b) {
+ return a.x*b.x + a.y*b.y;
+}
+
+
+/// cross product of two 2-vectors
+/// \param a first 2-vect
+/// \param b second 2-vect
+/// \return a x b is returned
+inline double cross_product(const Ctwovect & a, const Ctwovect & b) {
+ return a.x*b.y - a.y*b.x;
+}
+
+
+/**
+ * \class Ceta_phi_range
+ * \brief class for holding a covering range in eta-phi
+ *
+ * This class deals with ranges in the eta-phi plane. It
+ * implements methods to test if two ranges overlap and
+ * to take the union of two overlapping intervals.
+ */
+class Ceta_phi_range{
+public:
+ /// default ctor
+ Ceta_phi_range();
+
+ /// ctor with initialisation
+ /// we initialise with a centre (in eta,phi) and a radius
+ /// \param c_eta eta coordinate of the centre
+ /// \param c_phi phi coordinate of the centre
+ /// \param R radius
+ Ceta_phi_range(double c_eta, double c_phi, double R);
+
+ /// assignment of range
+ /// \param r range to assign to current one
+ Ceta_phi_range& operator = (const Ceta_phi_range &r);
+
+ /// add a particle to the range
+ /// \param eta eta coordinate of the particle
+ /// \param phi phi coordinate of the particle
+ /// \return 0 on success, 1 on error
+ int add_particle(const double eta, const double phi);
+
+ /// eta range as a binary coding of covered cells
+ unsigned int eta_range;
+
+ /// phi range as a binary coding of covered cells
+ unsigned int phi_range;
+
+ // extremal value for eta
+ static double eta_min; ///< minimal value for eta
+ static double eta_max; ///< maximal value for eta
+
+private:
+ /// return the cell index corrsponding to an eta value
+ inline unsigned int get_eta_cell(double eta){
+ return (unsigned int) (1 << ((int) (32*((eta-eta_min)/(eta_max-eta_min)))));
+ }
+
+ /// return the cell index corrsponding to a phi value
+ inline unsigned int get_phi_cell(double phi){
+ return (unsigned int) (1 << ((int) (32*phi/twopi+16)%32));
+ }
+};
+
+/// test overlap
+/// \param r1 first range
+/// \param r2 second range
+/// \return true if overlap, false otherwise.
+bool is_range_overlap(const Ceta_phi_range &r1, const Ceta_phi_range &r2);
+
+/// compute union
+/// Note: we assume that the two intervals overlap
+/// \param r1 first range
+/// \param r2 second range
+/// \return union of the two ranges
+const Ceta_phi_range range_union(const Ceta_phi_range &r1, const Ceta_phi_range &r2);
+
+}
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/geom_2d.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Revision
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/siscone_error.h
===================================================================
--- tags/siscone-3.0.4/siscone/siscone_error.h (revision 0)
+++ tags/siscone-3.0.4/siscone/siscone_error.h (revision 420)
@@ -0,0 +1,64 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: siscone_error.h //
+// Description: header file for SISCone error messages (Csiscone_error) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SISCONE_ERROR_H__
+#define __SISCONE_ERROR_H__
+
+#include<iostream>
+#include<string>
+
+namespace siscone{
+
+/// \class Csiscone_error
+/// class corresponding to errors that will be thrown by siscone
+class Csiscone_error {
+public:
+ /// default ctor
+ Csiscone_error() {;};
+
+ /// ctor with a given error message
+ /// \param message_in the error message to be printed
+ Csiscone_error(const std::string & message_in) {
+ m_message = message_in;
+ if (m_print_errors) std::cerr << "siscone::Csiscone_error: "<< message_in << std::endl;
+ };
+
+ /// access to the error message
+ std::string message() const {return m_message;};
+
+ /// switch on/off the error message printing
+ /// \param print_errors errors will be printed when true
+ static void setm_print_errors(bool print_errors) {
+ m_print_errors = print_errors;};
+
+private:
+ std::string m_message; ///< the error message
+ static bool m_print_errors; ///< do we print error messages?
+};
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/siscone_error.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/makefile.static
===================================================================
--- tags/siscone-3.0.4/siscone/makefile.static (revision 0)
+++ tags/siscone-3.0.4/siscone/makefile.static (revision 420)
@@ -0,0 +1,58 @@
+SUBDIRS = spherical
+CC = g++
+LIBOUT = libsiscone.a
+CFLAGS = -Wall -g -O3 -ffast-math
+
+LDFLAGS = -lm #-lprofiler -lpthread -ltcmalloc
+ifeq ($(shell whoami),salam)
+ # needed for Gavin to include tcmalloc
+ LDFLAGS += -L/ada1/lpthe/salam/software/local/lib
+endif
+
+OBJS = ranlux.o reference.o geom_2d.o momentum.o hash.o quadtree.o \
+ vicinity.o protocones.o split_merge.o siscone.o siscone_error.o area.o
+
+SRCS = $(patsubst %.o,%.cpp,$(OBJS))
+
+
+%.o: %.cpp %.h
+ $(CC) -c $(CFLAGS) $<
+
+%.o: %.cpp
+ $(CC) -c $(CFLAGS) $<
+
+all: $(OBJS) $(SUBDIRS)
+ ar cru $(LIBOUT) $(OBJS)
+ ranlib $(LIBOUT)
+
+.PHONY: clean $(SUBDIRS)
+
+clean: $(SUBDIRS)
+ rm -f *.o *~
+
+spherical:
+ @cd spherical && $(MAKE) -f makefile.static $(MAKECMDGOALS)
+
+# note the -Y option below avoids including all the standard
+# include directories (which change from one system to another)
+depend: $(SUBDIRS)
+ makedepend -f makefile.static -- -Y -- $(SRCS)
+# DO NOT DELETE
+
+ranlux.o: ranlux.h
+reference.o: reference.h ranlux.h
+geom_2d.o: geom_2d.h defines.h
+momentum.o: momentum.h reference.h geom_2d.h defines.h
+hash.o: hash.h momentum.h reference.h geom_2d.h defines.h
+quadtree.o: quadtree.h momentum.h reference.h geom_2d.h defines.h
+vicinity.o: vicinity.h momentum.h reference.h geom_2d.h defines.h quadtree.h
+protocones.o: protocones.h momentum.h reference.h geom_2d.h defines.h
+protocones.o: vicinity.h quadtree.h hash.h siscone_error.h circulator.h
+split_merge.o: split_merge.h defines.h geom_2d.h momentum.h reference.h
+split_merge.o: siscone_error.h
+siscone.o: config.h ranlux.h momentum.h reference.h geom_2d.h defines.h
+siscone.o: siscone.h protocones.h vicinity.h quadtree.h hash.h split_merge.h
+siscone.o: siscone_error.h
+siscone_error.o: siscone_error.h
+area.o: area.h momentum.h reference.h geom_2d.h defines.h siscone.h
+area.o: protocones.h vicinity.h quadtree.h hash.h split_merge.h
Index: tags/siscone-3.0.4/siscone/defines.h
===================================================================
--- tags/siscone-3.0.4/siscone/defines.h (revision 0)
+++ tags/siscone-3.0.4/siscone/defines.h (revision 420)
@@ -0,0 +1,128 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: defines.h //
+// Description: header file for generic parameters definitions //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+//! \file defines.h
+#ifndef __DEFINES_H__
+#define __DEFINES_H__
+
+/// program name
+// we get "SISCone" by calling
+// siscone::siscone_package_name
+// defined in siscone.h
+// Otherwise, config.h
+// It is also defined as "SISCONE_PACKAGE_NAME" in config.h but this method
+// might lead to conflicts
+//#define PROGRAM SISCONE_PACKAGE_NAME
+
+// program version
+// we get it from
+// siscone::siscone_version
+// defined in siscone.h
+// It is also defined as "SISCONE_VERSION" in config.h but this method
+// might lead to conflicts
+
+/// perform final stability check using the quadtree
+/// With the following define enabled, the final check for stability
+/// is performed using the quadtree rather than the explicit list of
+/// particles (see Cstable_cone::proceed_with_stability())
+//#define USE_QUADTREE_FOR_STABILITY_TEST
+
+
+/// threshold for recomoutation of the cone (see Cstable_cones::update_cone())
+/// When traversing cone candidates along the angular ordering,
+/// the momentum of the protojet candidate is computed incrementally
+/// from the particles that enter and leave the cone.
+/// When the cumulative change in "|px|+|py|" exceeds the cone "|px|+|py|"
+/// we explicitely recompute the cone contents
+#define PT_TSHOLD 1000.0
+
+
+/// The following parameter controls collinear safety. For the set of
+/// particles used in the search of stable cones, we gather particles
+/// if their distance in eta and phi is smaller than EPSILON_COLLINEAR.
+///
+/// NB: for things to behave sensibly one requires
+/// 1e-15 << EPSILON_COCIRCULAR << EPSILON_COLLINEAR << 1
+///
+/// among the scales that appear in practice (e.g. in deciding to use
+/// special strategies), we have EPSILON_COLLINEAR, EPSILON_COCIRCULAR,
+/// sqrt(EPSILON_COCIRCULAR) and EPSILON_COLLINEAR / EPSILON_COCIRCULAR.
+///
+#define EPSILON_COLLINEAR 1e-8
+
+
+/// The following parameter controls cocircular situations.
+/// When consecutive particles in the ordered vicinity list are separated
+/// (in angle) by less that that limit, we consider that we face a situation
+/// of cocircularity.
+#define EPSILON_COCIRCULAR 1e-12
+
+
+/// The following define enables you to allow for identical protocones
+/// to be merged automatically after each split-merge step before
+/// anything else happens. Whether this happens depends on teh value
+/// of the merge_identical_protocones flag in Csplit_merge.
+///
+/// It we allow such a merging and define allow
+/// MERGE_IDENTICAL_PROTOCONES_DEFAULT_TRUE then the
+/// 'merge_identical_protocones' flag in Csplit_merge to be set to
+/// 'true'. It may be manually reset to false in which case the
+/// merging of identical protocones (protojets) will be turned off.
+///
+/// Note that this merging identical protocones makes the algorithm
+/// infrared-unsafe, so it should be disabled except for testing
+/// purposes.
+//#define ALLOW_MERGE_IDENTICAL_PROTOCONES
+//#define MERGE_IDENTICAL_PROTOCONES_DEFAULT_TRUE
+
+
+/// if EPSILON_SPLITMERGE is defined then, during the split-merge
+/// step, when two jets are found with PTs that are identical to
+/// within a relative difference of EPSILON_SPLITMERGE they are
+/// compared element-by-element to see where the differences are, and
+/// one then uses pt1^2-pt2^2 = (pt1-pt2).(pt1+pt2) as an estimator of
+/// which is harder. NB: in unfortunate cases, this can take the split
+/// merge step up to N n * ln N time, though on normal events there
+/// don't seem to have been any major problems yet.
+#define EPSILON_SPLITMERGE 1e-12
+
+/// definition of 2*M_PI which is useful a bit everyhere!
+const double twopi = 6.283185307179586476925286766559005768394;
+
+/// debugging information
+//#define DEBUG_STABLE_CONES ///< debug messages in stable cones search
+//#define DEBUG_SPLIT_MERGE ///< debug messages in split-merge
+//#define DEBUG ///< all debug messages !
+
+// in case all debug massages allowed, allow them in practice !
+#ifdef DEBUG
+#define DEBUG_STABLE_CONES
+#define DEBUG_SPLIT_MERGE
+#endif
+
+#endif // __DEFINES_H__
+
Property changes on: tags/siscone-3.0.4/siscone/defines.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/hash.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/hash.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/hash.cpp (revision 420)
@@ -0,0 +1,230 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: hash.cpp //
+// Description: source file for classes hash_element and hash_cones //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <math.h>
+#include <stdio.h>
+#include "hash.h"
+#include <iostream>
+
+namespace siscone{
+
+using namespace std;
+
+/**************************************************************
+ * implementation of hash_cones *
+ * list of cones candidates. *
+ * We store in this class all the hash_elements and give *
+ * functions to manipulate them. *
+ **************************************************************/
+
+// constructor with initialisation
+// - _Np number of particles
+// - _R2 cone radius (squared)
+//-----------------------------------
+hash_cones::hash_cones(int _Np, double _R2){
+ int i;
+
+ n_cones = 0;
+#ifdef DEBUG_STABLE_CONES
+ n_occupied_cells = 0;
+#endif
+
+ // determine hash size
+ // for a ymax=5 and R=0.7, we observed an occupancy around 1/8 N^2 ~ N2 R2/4
+ //mask = 1 << (int) (2*log(double(_Np))/log(2.0));
+ //if (mask<=1) mask=2;
+ int nbits = (int) (log(_Np*_R2*_Np/4.0)/log(2.0));
+ if (nbits<1) nbits=1;
+ mask = 1 << nbits;
+
+ // create hash
+ hash_array = new hash_element*[mask];
+ mask--;
+
+ // set the array to 0
+ //? needed ?
+ for (i=0;i<mask+1;i++)
+ hash_array[i] = NULL;
+
+ R2 = _R2;
+}
+
+// destructor
+//------------
+hash_cones::~hash_cones(){
+ int i;
+ hash_element *elm;
+
+ for (i=0;i<mask+1;i++){
+ while (hash_array[i]!=NULL){
+ elm = hash_array[i];
+ hash_array[i] = hash_array[i]->next;
+ delete elm;
+ }
+ }
+
+ delete[] hash_array;
+}
+
+
+/*
+ * insert a new candidate into the hash.
+ * - v 4-momentum of the cone to add
+ * - parent parent particle defining the cone
+ * - child child particle defining the cone
+ * - p_io whether the parent has to belong to the cone or not
+ * - c_io whether the child has to belong to the cone or not
+ * return 0 on success, 1 on error
+ ***********************************************************************/
+int hash_cones::insert(Cmomentum *v, Cmomentum *parent, Cmomentum *child, bool p_io, bool c_io){
+ hash_element *elm;
+ int index = (v->ref.ref[0]) & mask;
+
+ // check the array cell corresponding to our reference
+ elm = hash_array[index];
+
+#ifdef DEBUG_STABLE_CONES
+ if (elm==NULL)
+ n_occupied_cells++;
+#endif
+
+ do{
+ // if it is not present, add it
+ if (elm==NULL){
+ // create element
+ elm = new hash_element;
+
+ // set its varibles
+ // Note: at this level, eta and phi have already been computed
+ // through Cmomentum::build_etaphi.
+ elm->ref = v->ref;
+
+ //compute vectors centre
+ v->build_etaphi();
+ elm->eta = v->eta;
+ elm->phi = v->phi;
+ // if at least one of the two is_inside tests gives a result != from the expected,
+ // the || will be true hence !(...) false as wanted
+ elm->is_stable = !((is_inside(v, parent)^p_io)||(is_inside(v, child)^c_io));
+ //cout << "-- new status of " << v->ref[0] << ":" << elm->is_stable << endl;
+
+ // update hash
+ elm->next = hash_array[index];
+ hash_array[index] = elm;
+
+ n_cones++;
+ return 0;
+ }
+
+ // if the cone is already there, simply update stability status
+ if (v->ref == elm->ref){
+ // there is only an update to perform to see if the cone is still stable
+ if (elm->is_stable){
+ v->build_etaphi();
+ elm->is_stable = !((is_inside(v, parent)^p_io)||(is_inside(v, child)^c_io));
+ //cout << " parent/child: "
+ // << parent->ref[0] << ":" << is_inside(v, parent) << ":" << p_io << " "
+ // << child->ref[0] << ":" << is_inside(v, child) << ":" << c_io << endl;
+ //cout << "-- rep status of " << v->ref[0] << ":" << elm->is_stable << endl;
+ //cout << v->eta << " " << v->phi << endl;
+ //cout << (child->eta) << " " << child->phi << endl;
+ }
+ return 0;
+ }
+
+ elm = elm->next;
+ } while (1);
+
+ return 1;
+}
+
+/*
+ * insert a new candidate into the hash.
+ * - v 4-momentum of te cone to add
+ * Note, in this case, we assume stability. We also assume
+ * that eta and phi are computed for v
+ * return 0 on success, 1 on error
+ ***********************************************************************/
+int hash_cones::insert(Cmomentum *v){
+ hash_element *elm;
+ int index = (v->ref.ref[0]) & mask;
+ //cout << "-- stable candidate: " << v->ref[0] << ":" << endl;
+
+ // check the array cell corresponding to our reference
+ elm = hash_array[index];
+ do{
+ // if it is not present, add it
+ if (elm==NULL){
+ // create element
+ elm = new hash_element;
+
+ // set its varibles
+ // Note: at this level, eta and phi have already been computed
+ // through Cmomentum::build_etaphi.
+ elm->ref = v->ref;
+ elm->eta = v->eta;
+ elm->phi = v->phi;
+ elm->is_stable = true;
+
+ // update hash
+ elm->next = hash_array[index];
+ hash_array[index] = elm;
+
+ n_cones++;
+ return 0;
+ }
+
+ // if the cone is already there, we have nothing to do
+ if (v->ref == elm->ref){
+ return 0;
+ }
+
+ elm = elm->next;
+ } while (1);
+
+ return 1;
+}
+
+/*
+ * test if a particle is inside a cone of given centre.
+ * check if the particle of coordinates 'v' is inside the circle of radius R
+ * centered at 'centre'.
+ * - centre centre of the circle
+ * - v particle to test
+ * return true if inside, false if outside
+ ******************************************************************************/
+inline bool hash_cones::is_inside(Cmomentum *centre, Cmomentum *v){
+ double dx, dy;
+
+ dx = centre->eta - v->eta;
+ dy = fabs(centre->phi - v->phi);
+ if (dy>M_PI)
+ dy -= 2.0*M_PI;
+
+ return dx*dx+dy*dy<R2;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/hash.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/.gitignore
===================================================================
--- tags/siscone-3.0.4/siscone/.gitignore (revision 0)
+++ tags/siscone-3.0.4/siscone/.gitignore (revision 420)
@@ -0,0 +1,7 @@
+/libsiscone.a
+/Makefile.in
+/.deps
+/Makefile
+/stamp-h1
+/config.h
+/.libs
Index: tags/siscone-3.0.4/siscone/Makefile.am
===================================================================
--- tags/siscone-3.0.4/siscone/Makefile.am (revision 0)
+++ tags/siscone-3.0.4/siscone/Makefile.am (revision 420)
@@ -0,0 +1,33 @@
+SUBDIRS = . spherical
+
+# build information for the SISCone library
+# this is built as a libtool lib.
+lib_LTLIBRARIES = libsiscone.la
+libsiscone_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+libsiscone_la_SOURCES = ranlux.cpp reference.cpp geom_2d.cpp\
+ momentum.cpp hash.cpp quadtree.cpp vicinity.cpp\
+ protocones.cpp split_merge.cpp siscone.cpp\
+ siscone_error.cpp area.cpp
+
+EXTRA_DIST = makefile.static
+
+# install the SISCone headers
+sisconeincludedir = $(includedir)/siscone
+sisconeinclude_HEADERS = area.h\
+ circulator.h\
+ defines.h\
+ geom_2d.h\
+ hash.h\
+ momentum.h\
+ protocones.h\
+ quadtree.h\
+ ranlux.h\
+ reference.h\
+ siscone_error.h\
+ siscone.h\
+ split_merge.h\
+ vicinity.h
+
+# distribute config.h but do not include it in the tarball (will be
+# generated by configure)
+nodist_sisconeinclude_HEADERS = config.h
Index: tags/siscone-3.0.4/siscone/hash.h
===================================================================
--- tags/siscone-3.0.4/siscone/hash.h (revision 0)
+++ tags/siscone-3.0.4/siscone/hash.h (revision 420)
@@ -0,0 +1,122 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: hash.h //
+// Description: header file for classes hash_element and hash_cones //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __HASH_H__
+#define __HASH_H__
+
+#include "momentum.h"
+#include "reference.h"
+
+namespace siscone{
+
+/**
+ * \class hash_element
+ * information on store cones candidates.
+ *
+ * We store in this class the information used to count all
+ * protocones in a first pass. This first pass only count
+ * cones with different references and test their stbility
+ * with the parent-child particles (border particles).
+ */
+class hash_element{
+ public:
+ Creference ref; ///< reference
+ double eta; ///< centre: eta coordinate
+ double phi; ///< centre: phi coordinate
+ bool is_stable; ///< true if stable w.r.t. "border particles"
+
+ hash_element *next; ///< pointer to the next element
+};
+
+/**
+ * \class hash_cones
+ * list of cones candidates.
+ *
+ * We store in this class all the hash_elements and give
+ * functions to manipulate them.
+ */
+class hash_cones{
+ public:
+ /// constructor with initialisation
+ /// \param _Np number of particles
+ /// \param _R2 cone radius (squared)
+ hash_cones(int _Np, double _R2);
+
+ /// destructor
+ ~hash_cones();
+
+ /**
+ * insert a new candidate into the hash.
+ * \param v 4-momentum of te cone to add
+ * \param parent parent particle defining the cone
+ * \param child child particle defining the cone
+ * \param p_io whether the parent has to belong to the cone or not
+ * \param c_io whether the child has to belong to the cone or not
+ * \return 0 on success, 1 on error
+ */
+ int insert(Cmomentum *v, Cmomentum *parent, Cmomentum *child, bool p_io, bool c_io);
+
+ /**
+ * insert a new candidate into the hash.
+ * \param v 4-momentum of te cone to add
+ * Note, in this case, we assume stability. We also assume
+ * that eta and phi are computed for v
+ * \return 0 on success, 1 on error
+ */
+ int insert(Cmomentum *v);
+
+ /// the cone data itself
+ hash_element **hash_array;
+
+ /// number of elements
+ int n_cones;
+
+ /// number of occupied cells
+#ifdef DEBUG_STABLE_CONES
+ int n_occupied_cells;
+#endif
+
+ /// number of cells-1
+ int mask;
+
+ /// circle radius (squared)
+ /// NOTE: need to be set before any call to 'insert'
+ double R2;
+
+ /**
+ * test if a particle is inside a cone of given centre.
+ * check if the particle of coordinates 'v' is inside the circle of radius R
+ * centered at 'centre'.
+ * \param centre centre of the circle
+ * \param v particle to test
+ * \return true if inside, false if outside
+ */
+ inline bool is_inside(Cmomentum *centre, Cmomentum *v);
+};
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/hash.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/Makefile.am
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/Makefile.am (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/Makefile.am (revision 420)
@@ -0,0 +1,25 @@
+# build information for the SISCone library
+# this is built as a libtool lib.
+lib_LTLIBRARIES = libsiscone_spherical.la
+
+# On top of the configured flags, we need to access the the
+# top dir for includes of the form <siscone/*.h> to work
+# Note that we use "siscone/..." for clarity.
+# Then we need to access the config.h file which is one step away
+# since we use <siscone/config.h> (for consistency), this means ../..
+libsiscone_spherical_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/../.. -I../..
+libsiscone_spherical_la_SOURCES = geom_2d.cpp momentum.cpp hash.cpp\
+ vicinity.cpp protocones.cpp split_merge.cpp siscone.cpp
+libsiscone_spherical_la_LIBADD = ../libsiscone.la
+
+EXTRA_DIST = makefile.static
+
+# install the SISCone headers
+sisconeincludedir = $(includedir)/siscone/spherical
+sisconeinclude_HEADERS = geom_2d.h\
+ hash.h\
+ momentum.h\
+ protocones.h\
+ siscone.h\
+ split_merge.h\
+ vicinity.h
Index: tags/siscone-3.0.4/siscone/spherical/hash.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/hash.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/hash.h (revision 420)
@@ -0,0 +1,113 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: hash.h //
+// Description: header file for classes hash_element and hash_cones //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_HASH_H__
+#define __SPH_HASH_H__
+
+#include "momentum.h"
+
+namespace siscone_spherical{
+
+/**
+ * \class sph_hash_element
+ * information on store cones candidates.
+ *
+ * We store in this class the information used to count all
+ * protocones in a first pass. This first pass only count
+ * cones with different references and test their stbility
+ * with the parent-child particles (border particles).
+ */
+class sph_hash_element{
+ public:
+ CSph3vector centre; ///< centre of the cone
+ bool is_stable; ///< true if stable w.r.t. "border particles"
+
+ sph_hash_element *next; ///< pointer to the next element
+};
+
+/**
+ * \class sph_hash_cones
+ * list of cones candidates.
+ *
+ * We store in this class all the hash_elements and give
+ * functions to manipulate them.
+ */
+class sph_hash_cones{
+ public:
+ /// \param _Np number of particles
+ /// \param _radius cone radius
+ sph_hash_cones(int _Np, double _radius);
+
+ /// destructor
+ ~sph_hash_cones();
+
+ /**
+ * insert a new candidate into the hash.
+ * \param v 4-momentum of te cone to add
+ * \param parent parent particle defining the cone
+ * \param child child particle defining the cone
+ * \param p_io whether the parent has to belong to the cone or not
+ * \param c_io whether the child has to belong to the cone or not
+ * \return 0 on success, 1 on error
+ */
+ int insert(CSphmomentum *v, CSphmomentum *parent, CSphmomentum *child, bool p_io, bool c_io);
+
+ /**
+ * insert a new candidate into the hash.
+ * \param v 4-momentum of te cone to add
+ * Note, in this case, we assume stability. We also assume
+ * that eta and phi are computed for v
+ * \return 0 on success, 1 on error
+ */
+ int insert(CSphmomentum *v);
+
+ /// the cone data itself
+ sph_hash_element **hash_array;
+
+ /// number of elements
+ int n_cones;
+
+ /// number of occupied cells
+#ifdef DEBUG_STABLE_CONES
+ int n_occupied_cells;
+#endif
+
+ /// number of cells-1
+ int mask;
+
+ /// circle radius (squared)
+ /// NOTE: need to be set before any call to 'insert'
+ double R2;
+
+ /// its squreed tangent
+ double tan2R;
+};
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/hash.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/protocones.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/protocones.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/protocones.cpp (revision 420)
@@ -0,0 +1,862 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: protocones.cpp //
+// Description: source file for stable cones determination (Cstable_cones) //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+/*******************************************************
+ * Introductory note: *
+ * Since this file has many member functions, we have *
+ * structured them in categories: *
+ * INITIALISATION FUNCTIONS *
+ * - ctor() *
+ * - ctor(particle_list) *
+ * - dtor() *
+ * - init(particle_list) *
+ * ALGORITHM MAIN ENTRY *
+ * - get_stable_cone(radius) *
+ * ALGORITHM MAIN STEPS *
+ * - init_cone() *
+ * - test_cone() *
+ * - update_cone() *
+ * - proceed_with_stability() *
+ * ALGORITHM MAIN STEPS FOR COCIRCULAR SITUATIONS *
+ * - cocircular_pt_less(v1, v2) *
+ * - prepare_cocircular_list() *
+ * - test_cone_cocircular() *
+ * - test_stability(candidate, border_list) *
+ * - updat_cone_cocircular() *
+ * RECOMPUTATION OF CONE CONTENTS *
+ * - compute_cone_contents() *
+ * - recompute_cone_contents() *
+ * - recompute_cone_contents_if_needed() *
+ * VARIOUS TOOLS *
+ * - circle_intersect() *
+ * - is_inside() *
+ * - abs_dangle() *
+ *******************************************************/
+
+#include <siscone/defines.h>
+#include <siscone/siscone_error.h>
+#include <siscone/circulator.h>
+#include "protocones.h"
+#include <math.h>
+#include <iostream>
+#include <algorithm>
+
+namespace siscone_spherical{
+
+using namespace std;
+
+/**********************************************************************
+ * CSphstable_cones implementation *
+ * Computes the list of stable comes from a particle list. *
+ * This class does the first fundamental task of te cone algorithm: *
+ * it is used to compute the list of stable cones given a list *
+ * of particles. *
+ **********************************************************************/
+
+////////////////////////////////////////////////////////
+// INITIALISATION FUNCTIONS //
+// - ctor() //
+// - ctor(particle_list) //
+// - dtor() //
+// - init(particle_list) //
+////////////////////////////////////////////////////////
+
+// default ctor
+//--------------
+CSphstable_cones::CSphstable_cones(){
+ nb_tot = 0;
+ hc = NULL;
+}
+
+// ctor with initialisation
+//--------------------------
+CSphstable_cones::CSphstable_cones(vector<CSphmomentum> &_particle_list)
+ : CSphvicinity(_particle_list){
+
+ nb_tot = 0;
+ hc = NULL;
+}
+
+// default dtor
+//--------------
+CSphstable_cones::~CSphstable_cones(){
+ if (hc!=NULL) delete hc;
+}
+
+/*
+ * initialisation
+ * - _particle_list list of particles
+ * - _n number of particles
+ *********************************************************************/
+void CSphstable_cones::init(vector<CSphmomentum> &_particle_list){
+ // check already allocated mem
+ if (hc!=NULL){
+ delete hc;
+ }
+ if (protocones.size()!=0)
+ protocones.clear();
+
+ multiple_centre_done.clear();
+
+ // initialisation
+ set_particle_list(_particle_list);
+}
+
+
+////////////////////////////////////////////////////////
+// ALGORITHM MAIN ENTRY //
+// - get_stable_cone(radius) //
+////////////////////////////////////////////////////////
+
+/*
+ * compute stable cones.
+ * This function really does the job i.e. computes
+ * the list of stable cones (in a seedless way)
+ * - _radius: radius of the cones
+ * The number of stable cones found is returned
+ *********************************************************************/
+int CSphstable_cones::get_stable_cones(double _radius){
+ int p_idx;
+
+ // check if everything is correctly initialised
+ if (n_part==0){
+ return 0;
+ }
+
+ R = _radius;
+ R2 = R*R;
+ tan2R = tan(R);
+ tan2R *= tan2R;
+
+ // allow hash for cones candidates
+ hc = new sph_hash_cones(n_part, R);
+
+ // browse all particles
+ for (p_idx=0;p_idx<n_part;p_idx++){
+ // step 0: compute the child list CL.
+ // Note that this automatically sets the parent P
+ build(&plist[p_idx], 2.0*R);
+
+ // special case:
+ // if the vicinity is empty, the parent particle is a
+ // stable cone by itself. Add it to protocones list.
+ if (vicinity_size==0){
+ protocones.push_back(*parent);
+ continue;
+ }
+
+#ifdef DEBUG_STABLE_CONES
+ cout << endl << endl;
+ cout << "plot 'particles.dat' u 2:1 pt 1 ps 3" << endl;
+ cout << "set label 1 'x' at " << parent->_phi << ", " << parent->_theta << endl;
+#endif
+
+ // step 1: initialise with the first cone candidate
+ init_cone();
+
+ do{
+ // step 2: test cone stability for that pair (P,C)
+ test_cone();
+
+ // step 3: go to the next cone child candidate C
+ } while (!update_cone());
+ }
+
+ return proceed_with_stability();
+}
+
+
+////////////////////////////////////////////////////////
+// ALGORITHM MAIN STEPS //
+// - init_cone() //
+// - test_cone() //
+// - update_cone() //
+// - proceed_with_stability() //
+////////////////////////////////////////////////////////
+
+/*
+ * initialise the cone.
+ * We take the first particle in the angular ordering to compute
+ * this one
+ * return 0 on success, 1 on error
+ *********************************************************************/
+int CSphstable_cones::init_cone(){
+ // The previous version of the algorithm was starting the
+ // loop around vicinity elements with the "most isolated" child.
+ // given the nodist method to calculate the cone contents, we no
+ // longer need to worry about which cone comes first...
+ first_cone=0;
+
+ // now make sure we have lists of the cocircular particles
+ prepare_cocircular_lists();
+
+ //TODO? deal with a configuration with only degeneracies ?
+ // The only possibility seems a regular hexagon with a parent point
+ // in the centre. And this situation is by itself unclear.
+ // Hence, we do nothing here !
+
+ // init set child C
+ centre = vicinity[first_cone];
+ child = centre->v;
+ centre_idx = first_cone;
+
+ // build the initial cone (nodist: avoids calculating distances --
+ // just deduces contents by circulating around all in/out operations)
+ // this function also sets the list of included particles
+ compute_cone_contents();
+
+ return 0;
+}
+
+
+/*
+ * test cones.
+ * We check if the cone(s) built with the present parent and child
+ * are stable
+ * return 0 on success 1 on error
+ *********************************************************************/
+int CSphstable_cones::test_cone(){
+ siscone::Creference weighted_cone_ref;
+
+ // depending on the side we are taking the child particle,
+ // we test different configuration.
+ // Each time, two configurations are tested in such a way that
+ // all 4 possible cases (parent or child in or out the cone)
+ // are tested when taking the pair of particle parent+child
+ // and child+parent.
+
+ // here are the tests entering the first series:
+ // 1. check if the cone is already inserted
+ // 2. check cone stability for the parent and child particles
+
+ //UPDATED(see below): if (centre->side){
+ //UPDATED(see below): // test when both particles are not in the cone
+ //UPDATED(see below): // or when both are in.
+ //UPDATED(see below): // Note: for the totally exclusive case, test emptyness before
+ //UPDATED(see below): cone_candidate = cone;
+ //UPDATED(see below): if (cone.ref.not_empty()){
+ //UPDATED(see below): hc->insert(&cone_candidate, parent, child, false, false);
+ //UPDATED(see below): }
+ //UPDATED(see below):
+ //UPDATED(see below): cone_candidate = cone;
+ //UPDATED(see below): cone_candidate+= *parent + *child;
+ //UPDATED(see below): hc->insert(&cone_candidate, parent, child, true, true);
+ //UPDATED(see below): } else {
+ //UPDATED(see below): // test when 1! of the particles is in the cone
+ //UPDATED(see below): cone_candidate = cone + *parent;
+ //UPDATED(see below): hc->insert(&cone_candidate, parent, child, true, false);
+ //UPDATED(see below):
+ //UPDATED(see below): cone_candidate = cone + *child;
+ //UPDATED(see below): hc->insert(&cone_candidate, parent, child, false, true);
+ //UPDATED(see below): }
+ //UPDATED(see below):
+ //UPDATED(see below): nb_tot+=2;
+
+ // instead of testing 2 inclusion/exclusion states for every pair, we test the 4 of them
+ // when the parent has an energy bigger than the child
+ if (parent->E >= child->E){
+ // test when both particles are not in the cone
+ // Note: for the totally exclusive case, test emptiness before
+ cone_candidate = cone;
+ if (cone.ref.not_empty()){
+ hc->insert(&cone_candidate, parent, child, false, false);
+ }
+
+ // test when 1! of the particles is in the cone
+ cone_candidate += *parent;
+ hc->insert(&cone_candidate, parent, child, true, false);
+
+ cone_candidate = cone;
+ cone_candidate += *child;
+ hc->insert(&cone_candidate, parent, child, false, true);
+
+ // test when both are in.
+ cone_candidate += *parent;
+ hc->insert(&cone_candidate, parent, child, true, true);
+
+ nb_tot += 4;
+ }
+
+
+ return 0;
+}
+
+
+/*
+ * update the cone
+ * go to the next child for that parent and update 'cone' appropriately
+ * return 0 if update candidate found, 1 otherwise
+ ***********************************************************************/
+int CSphstable_cones::update_cone(){
+#ifdef DEBUG_STABLE_CONES
+ cout << "call 'circles_plot.gp' '" << centre->centre.px << "' '"
+ << centre->centre.py << "' '" << centre->centre.pz << "'" << endl
+ << "pause -1 '(" << centre->angle << " " << (centre->side ? '+' : '-') << ")";
+#endif
+
+ // get the next child and centre
+ centre_idx++;
+ if (centre_idx==vicinity_size)
+ centre_idx=0;
+ if (centre_idx==first_cone)
+ return 1;
+
+ // update the cone w.r.t. the old child
+ // only required if the old child is entering inside in which
+ // case we need to add it. We also know that the child is
+ // inside iff its side is -.
+ if (!centre->side){
+#ifdef DEBUG_STABLE_CONES
+ cout << " old_enter";
+#endif
+ // update cone
+ cone += (*child);
+
+ // update info on particles inside
+ centre->is_inside->cone = true;
+
+ // update stability check quantities
+ dpt += fabs(child->px)+fabs(child->py)+fabs(child->pz);
+ }
+
+ // update centre and child to correspond to the new position
+ centre = vicinity[centre_idx];
+ child = centre->v;
+
+ // check cocircularity
+ // note that if cocirculaity is detected (i.e. if we receive 1
+ // in the next test), we need to recall 'update_cone' directly
+ // since tests and remaining part of te update has been performed
+ //if (cocircular_check())
+ if (cocircular_check()){
+#ifdef DEBUG_STABLE_CONES
+ cout << " Co-circular case detected" << endl;
+#endif
+ return update_cone();
+ }
+
+ // update the cone w.r.t. the new child
+ // only required if the new child was already inside in which
+ // case we need to remove it. We also know that the child is
+ // inside iff its side is +.
+ if ((centre->side) && (cone.ref.not_empty())){
+#ifdef DEBUG_STABLE_CONES
+ cout << " new exit";
+#endif
+
+ // update cone
+ cone -= (*child);
+
+ // update info on particles inside
+ centre->is_inside->cone = false;
+
+ // update stability check quantities
+ dpt += fabs(child->px)+fabs(child->py)+fabs(child->pz); //child->perp2();
+ }
+
+ // check that the addition and subtraction of vectors does
+ // not lead to too much rounding error
+ // for that, we compute the sum of pt modifications and of |pt|
+ // since last recomputation and once the ratio overpasses a threshold
+ // we recompute vicinity.
+ if ((dpt>PT_TSHOLD*(fabs(cone.px)+fabs(cone.py)+fabs(cone.pz))) && (cone.ref.not_empty())){
+ recompute_cone_contents();
+ }
+ if (cone.ref.is_empty()){
+ cone = CSphmomentum();
+ dpt=0.0;
+ }
+
+#ifdef DEBUG_STABLE_CONES
+ cout << "'" << endl;
+#endif
+
+ return 0;
+}
+
+
+/*
+ * compute stability of all enumerated candidates.
+ * For all candidate cones which are stable w.r.t. their border particles,
+ * pass the last test: stability with quadtree intersection
+ ************************************************************************/
+int CSphstable_cones::proceed_with_stability(){
+ int i;
+ sph_hash_element *elm;
+
+ for (i=0;i<=hc->mask;i++){
+ // test ith cell of the hash array
+ elm = hc->hash_array[i];
+
+ // browse elements therein
+ while (elm!=NULL){
+ // test stability
+ if (elm->is_stable){
+ // stability is not ensured by all pairs of "edges" already browsed
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ // => testing stability with quadtree intersection
+ if (quadtree->circle_intersect(elm->eta, elm->phi, R2)==elm->ref)
+#else
+ // => testing stability with the particle-list intersection
+ if (circle_intersect(elm->centre)==elm->centre.ref)
+#endif
+ protocones.push_back(CSphmomentum(elm->centre,1.0));
+ }
+
+ // jump to the next one
+ elm = elm->next;
+ }
+ }
+
+ // free hash
+ // we do that at this level because hash eats rather a lot of memory
+ // we want to free it before running the split/merge algorithm
+#ifdef DEBUG_STABLE_CONES
+ nb_hash_cones = hc->n_cones;
+ nb_hash_occupied = hc->n_occupied_cells;
+#endif
+
+ delete hc;
+ hc=NULL;
+
+ return protocones.size();
+}
+
+
+////////////////////////////////////////////////////////
+// ALGORITHM MAIN STEPS FOR COCIRCULAR SITUATIONS //
+// - cocircular_pt_less(v1, v2) //
+// - prepare_cocircular_list() //
+// - test_cone_cocircular() //
+// - test_stability(candidate, border_vect) //
+// - updat_cone_cocircular() //
+////////////////////////////////////////////////////////
+
+/// pt-ordering of momenta used for the cocircular case
+//NEVER USED
+//bool cocircular_pt_less(CSphmomentum *v1, CSphmomentum *v2){
+// return v1->perp2() < v2->perp2();
+//}
+
+/*
+ * run through the vicinity of the current parent and for each child
+ * establish which other members are cocircular... Note that the list
+ * associated with each child contains references to vicinity
+ * elements: thus two vicinity elements each associated with one given
+ * particle may appear in a list -- this needs to be watched out for
+ * later on...
+ **********************************************************************/
+void CSphstable_cones::prepare_cocircular_lists() {
+ siscone::circulator<vector<CSphvicinity_elm*>::iterator > here(vicinity.begin(),
+ vicinity.begin(),
+ vicinity.end());
+
+ siscone::circulator<vector<CSphvicinity_elm*>::iterator > search(here);
+
+ do {
+ CSphvicinity_elm* here_pntr = *here();
+ search.set_position(here);
+
+ // search forwards for things that should have "here" included in
+ // their cocircularity list
+ while (true) {
+ ++search;
+ if ( siscone::abs_dphi((*search())->angle, here_pntr->angle) <
+ here_pntr->cocircular_range
+ && search() != here()) {
+ (*search())->cocircular.push_back(here_pntr);
+ } else {
+ break;
+ }
+ }
+
+ // search backwards
+ search.set_position(here);
+ while (true) {
+ --search;
+ if ( siscone::abs_dphi((*search())->angle, here_pntr->angle) <
+ here_pntr->cocircular_range
+ && search() != here()) {
+ (*search())->cocircular.push_back(here_pntr);
+ } else {
+ break;
+ }
+ }
+
+ ++here;
+ } while (here() != vicinity.begin());
+}
+
+/*
+ * Testing cocircular configurations in p^3 time,
+ * rather than 2^p time; we will test all contiguous subsets of points
+ * on the border --- note that this is till probably overkill, since
+ * in principle we only have to test situations where up to a
+ * half-circle is filled (but going to a full circle is simpler)
+ ******************************************************************/
+void CSphstable_cones::test_cone_cocircular(CSphmomentum & borderless_cone,
+ list<CSphmomentum *> & border_list) {
+ // in spherical coordinates, we don't have a universal x-y axis system
+ // to measure the angles. So we first determine one minimising
+ // the uncertainties
+ CSph3vector angl_dir1, angl_dir2;
+ centre->centre.get_angular_directions(angl_dir1, angl_dir2);
+ angl_dir1/=angl_dir1._norm;
+ angl_dir2/=angl_dir2._norm;
+
+ // now we have te reference axis, create the CSphborder_store structure
+ vector<CSphborder_store> border_vect;
+ border_vect.reserve(border_list.size());
+ for (list<CSphmomentum *>::iterator it = border_list.begin();
+ it != border_list.end(); it++) {
+ border_vect.push_back(CSphborder_store(*it, centre->centre, angl_dir1, angl_dir2));
+ }
+
+ // get them into order of angle
+ sort(border_vect.begin(), border_vect.end());
+
+ // set up some circulators, since these will help us go around the
+ // circle easily
+ siscone::circulator<vector<CSphborder_store>::iterator >
+ start(border_vect.begin(), border_vect.begin(),border_vect.end());
+ siscone::circulator<vector<CSphborder_store>::iterator > mid(start), end(start);
+
+ // test the borderless cone
+ CSphmomentum candidate = borderless_cone;
+ //candidate.build_etaphi();
+ if (candidate.ref.not_empty())
+ test_stability(candidate, border_vect);
+
+ do {
+ // reset status wrt inclusion in the cone
+ mid = start;
+ do {
+ mid()->is_in = false;
+ } while (++mid != start);
+
+ // now run over all inclusion possibilities with this starting point
+ candidate = borderless_cone;
+ while (++mid != start) {
+ // will begin with start+1 and go up to start-1
+ mid()->is_in = true;
+ candidate += *(mid()->mom);
+ test_stability(candidate, border_vect);
+ }
+
+ } while (++start != end);
+
+ // mid corresponds to momentum that we need to include to get the
+ // full cone
+ mid()->is_in = true;
+ candidate += *(mid()->mom);
+ test_stability(candidate, border_vect);
+}
+
+
+/**
+ * carry out the computations needed for the stability check of the
+ * candidate, using the border_vect to indicate which particles
+ * should / should not be in the stable cone; if the cone is stable
+ * insert it into the hash.
+ **********************************************************************/
+void CSphstable_cones::test_stability(CSphmomentum & candidate, const vector<CSphborder_store> & border_vect) {
+
+ // this almost certainly has not been done...
+ //candidate.build_etaphi();
+
+ bool stable = true;
+ for (unsigned i = 0; i < border_vect.size(); i++) {
+ if (is_closer(&candidate, border_vect[i].mom,tan2R) ^ (border_vect[i].is_in)) {
+ stable = false;
+ break; // it's unstable so there's no point continuing
+ }
+ }
+
+ if (stable) hc->insert(&candidate);
+}
+
+/*
+ * check if we are in a situation of cocircularity.
+ * if it is the case, update and test in the corresponding way
+ * return 'false' if no cocircularity detected, 'true' otherwise
+ * Note that if cocircularity is detected, we need to
+ * recall 'update' from 'update' !!!
+ ***************************************************************/
+bool CSphstable_cones::cocircular_check(){
+ // check if many configurations have the same centre.
+ // if this is the case, branch on the algorithm for this
+ // special case.
+ // Note that those situation, being considered separately in
+ // test_cone_multiple, must only be considered here if all
+ // angles are on the same side (this avoid multiple counting)
+
+ if (centre->cocircular.empty()) return false;
+
+ // first get cone into status required at end...
+ if ((centre->side) && (cone.ref.not_empty())){
+ // update cone
+ cone -= (*child);
+
+ // update info on particles inside
+ centre->is_inside->cone = false;
+
+ // update stability check quantities
+ dpt += fabs(child->px)+fabs(child->py)+fabs(child->pz); //child->perp2();
+ }
+
+
+ // now establish the list of unique children in the list
+ // first make sure parent and child are in!
+
+ list<siscone::Cvicinity_inclusion *> removed_from_cone;
+ list<siscone::Cvicinity_inclusion *> put_in_border;
+ list<CSphmomentum *> border_list;
+
+ CSphmomentum cone_removal;
+ CSphmomentum border = *parent;
+ border_list.push_back(parent);
+
+ // make sure child appears in the border region
+ centre->cocircular.push_back(centre);
+
+ // now establish the full contents of the cone minus the cocircular
+ // region and of the cocircular region itself
+ for(list<CSphvicinity_elm *>::iterator it = centre->cocircular.begin();
+ it != centre->cocircular.end(); it++) {
+
+ if ((*it)->is_inside->cone) {
+ cone_removal += *((*it)->v);
+ (*it)->is_inside->cone = false;
+ removed_from_cone.push_back((*it)->is_inside);
+ }
+
+ // if a point appears twice (i.e. with + and - sign) in the list of
+ // points on the border, we take care not to include it twice.
+ // Note that this situation may appear when a point is at a distance
+ // close to 2R from the parent
+ if (!(*it)->is_inside->cocirc) {
+ border += *((*it)->v);
+ (*it)->is_inside->cocirc = true;
+ put_in_border.push_back((*it)->is_inside);
+ border_list.push_back((*it)->v);
+ //cout << " adding particle " << (*it)->v->_theta << ", " << (*it)->v->_phi << " to the border list" << endl;
+ }
+ }
+
+
+ // figure out whether this pairing has been observed before
+ CSphmomentum borderless_cone = cone;
+ borderless_cone -= cone_removal;
+ bool consider = true;
+ for (unsigned int i=0;i<multiple_centre_done.size();i++){
+ if ((multiple_centre_done[i].first ==borderless_cone.ref) &&
+ (multiple_centre_done[i].second==border.ref))
+ consider = false;
+ }
+
+ // now prepare the hard work
+ if (consider) {
+ // record the fact that we've now seen this combination
+ multiple_centre_done.push_back(pair<siscone::Creference,siscone::Creference>(borderless_cone.ref,
+ border.ref));
+
+ // first figure out whether our cone momentum is good
+ double local_dpt = fabs(cone_removal.px) + fabs(cone_removal.py);
+ double total_dpt = dpt + local_dpt;
+
+ recompute_cone_contents_if_needed(borderless_cone, total_dpt);
+ if (total_dpt == 0) {
+ // a recomputation has taken place -- so take advantage of this
+ // and update the member cone momentum
+ cone = borderless_cone + cone_removal;
+ dpt = local_dpt;
+ }
+
+ test_cone_cocircular(borderless_cone, border_list);
+ }
+
+
+ // relabel things that were in the cone but got removed
+ for(list<siscone::Cvicinity_inclusion *>::iterator is_in = removed_from_cone.begin();
+ is_in != removed_from_cone.end(); is_in++) {
+ (*is_in)->cone = true;
+ }
+
+ // relabel things that got put into the border
+ for(list<siscone::Cvicinity_inclusion *>::iterator is_in = put_in_border.begin();
+ is_in != put_in_border.end(); is_in++) {
+ (*is_in)->cocirc = false;
+ }
+
+ // we're done with everything -- return true to signal to user that we've
+ // been through the co-circularity rigmarole
+ return true;
+}
+
+
+////////////////////////////////////////////////////////
+// RECOMPUTATION OF CONE CONTENTS //
+// - compute_cone_contents() //
+// - recompute_cone_contents() //
+// - recompute_cone_contents_if_needed() //
+////////////////////////////////////////////////////////
+
+/**
+ * compute the cone contents by going once around the full set of
+ * circles and tracking the entry/exit status each time
+ * given parent, child and centre compute the momentum
+ * of the particle inside the cone
+ * This sets up the inclusion information, which can then be directly
+ * used to calculate the cone momentum.
+ **********************************************************************/
+void CSphstable_cones::compute_cone_contents() {
+ siscone::circulator<vector<CSphvicinity_elm*>::iterator >
+ start(vicinity.begin()+first_cone, vicinity.begin(), vicinity.end());
+
+ siscone::circulator<vector<CSphvicinity_elm*>::iterator > here(start);
+
+ // note that in the following algorithm, the cone contents never includes
+ // the child. Indeed, if it has positive sign, then it will be set as
+ // outside at the last step in the loop. If it has negative sign, then the
+ // loop will at some point go to the corresponding situation with positive
+ // sign and set the inclusion status to 0.
+
+ do {
+ // as we leave this position a particle enters if its side is
+ // negative (i.e. the centre is the one at -ve angle wrt to the
+ // parent-child line
+ if (!(*here())->side) ((*here())->is_inside->cone) = 1;
+
+ // move on to the next position
+ ++here;
+
+ // as we arrive at this position a particle leaves if its side is positive
+ if ((*here())->side) ((*here())->is_inside->cone) = 0;
+ } while (here != start);
+
+ // once we've reached the start the 'is_inside' information should be
+ // 100% complete, so we can use it to calculate the cone contents
+ // and then exit
+ recompute_cone_contents();
+ return;
+
+}
+
+
+/*
+ * compute the cone momentum from particle list.
+ * in this version, we use the 'pincluded' information
+ * from the CSphvicinity class
+ */
+void CSphstable_cones::recompute_cone_contents(){
+ unsigned int i;
+
+ // set momentum to 0
+ cone = CSphmomentum();
+
+ // Important note: we can browse only the particles
+ // in vicinity since all particles in the cone are
+ // withing a distance 2R w.r.t. parent hence in vicinity.
+ // Among those, we only add the particles for which 'is_inside' is true !
+ // This methos rather than a direct comparison avoids rounding errors
+ for (i=0;i<vicinity_size;i++){
+ // to avoid double-counting, only use particles with + angle
+ if ((vicinity[i]->side) && (vicinity[i]->is_inside->cone))
+ cone += *vicinity[i]->v;
+ }
+
+ // set check variables back to 0
+ dpt = 0.0;
+}
+
+
+/*
+ * if we have gone beyond the acceptable threshold of change, compute
+ * the cone momentum from particle list. in this version, we use the
+ * 'pincluded' information from the CSphvicinity class, but we don't
+ * change the member cone, only the locally supplied one
+ */
+void CSphstable_cones::recompute_cone_contents_if_needed(CSphmomentum & this_cone,
+ double & this_dpt){
+
+ if (this_dpt > PT_TSHOLD*(fabs(this_cone.px)+fabs(this_cone.py))) {
+ if (cone.ref.is_empty()) {
+ this_cone = CSphmomentum();
+ } else {
+ // set momentum to 0
+ this_cone = CSphmomentum();
+
+ // Important note: we can browse only the particles
+ // in vicinity since all particles in the this_cone are
+ // withing a distance 2R w.r.t. parent hence in vicinity.
+ // Among those, we only add the particles for which 'is_inside' is true !
+ // This methos rather than a direct comparison avoids rounding errors
+ for (unsigned int i=0;i<vicinity_size;i++){
+ // to avoid double-counting, only use particles with + angle
+ if ((vicinity[i]->side) && (vicinity[i]->is_inside->cone))
+ this_cone += *vicinity[i]->v;
+ }
+
+ }
+ // set check variables back to 0
+ this_dpt = 0.0;
+ }
+
+}
+
+
+////////////////////////////////////////////////////////
+// VARIOUS TOOLS //
+// - circle_intersect() //
+// - is_inside() //
+// - abs_dangle() //
+////////////////////////////////////////////////////////
+
+
+/*
+ * circle intersection.
+ * computes the intersection with a circle of given centre and radius.
+ * The output takes the form of a checkxor of the intersection's particles
+ * - cx circle centre x coordinate
+ * - cy circle centre y coordinate
+ * return the checkxor for the intersection
+ ******************************************************************/
+siscone::Creference CSphstable_cones::circle_intersect(CSph3vector &cone_centre){
+ siscone::Creference intersection;
+ int i;
+
+ for (i=0;i<n_part;i++){
+ // really check if the distance is less than R
+ if (is_closer(&cone_centre, &(plist[i]), tan2R))
+ intersection+=plist[i].ref;
+ }
+
+ return intersection;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/spherical/protocones.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/vicinity.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/vicinity.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/vicinity.cpp (revision 420)
@@ -0,0 +1,300 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: vicinity.cpp //
+// Description: source file for particle vicinity (Cvicinity class) //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "vicinity.h"
+#include <math.h>
+#include <algorithm>
+#include <iostream>
+
+namespace siscone_spherical{
+
+using namespace std;
+
+/*************************************************************
+ * CSphvicinity_elm implementation *
+ * element in the vicinity of a parent. *
+ * class used to manage one points in the vicinity *
+ * of a parent point. *
+ *************************************************************/
+
+// ordering pointers to CSphvicinity_elm
+//---------------------------------------
+bool ve_less(CSphvicinity_elm *ve1, CSphvicinity_elm *ve2){
+ return ve1->angle < ve2->angle;
+}
+
+
+/*************************************************************
+ * CSphvicinity implementation *
+ * list of element in the vicinity of a parent. *
+ * class used to manage the points which are in the vicinity *
+ * of a parent point. The construction of the list can be *
+ * made from a list of points or from a quadtree. *
+ *************************************************************/
+
+// default constructor
+//---------------------
+CSphvicinity::CSphvicinity(){
+ n_part = 0;
+
+ ve_list = NULL;
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ quadtree = NULL;
+#endif
+
+ parent = NULL;
+ VR2 = VR = 0.0;
+
+}
+
+// constructor with initialisation
+//---------------------------------
+CSphvicinity::CSphvicinity(vector<CSphmomentum> &_particle_list){
+ parent = NULL;
+ ve_list = NULL;
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ quadtree = NULL;
+#endif
+ cosVR = VR2 = tan2R = VR = 0.0;
+
+ set_particle_list(_particle_list);
+}
+
+// default destructor
+//--------------------
+CSphvicinity::~CSphvicinity(){
+ if (ve_list!=NULL)
+ delete[] ve_list;
+
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ if (quadtree!=NULL)
+ delete quadtree;
+#endif
+}
+
+/*
+ * set the particle_list
+ * - particle_list list of particles (type CSphmomentum)
+ * - n number of particles in the list
+ ************************************************************/
+void CSphvicinity::set_particle_list(vector<CSphmomentum> &_particle_list){
+ int i,j;
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ double eta_max=0.0;
+#endif
+
+ // if the particle list is not empty, destroy it !
+ if (ve_list!=NULL){
+ delete[] ve_list;
+ }
+ vicinity.clear();
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ if (quadtree!=NULL)
+ delete quadtree;
+#endif
+
+ // allocate memory array for particles
+ // Note: - we compute max for |eta|
+ // - we allocate indices to particles
+ n_part = 0;
+ plist.clear();
+ pincluded.clear();
+ for (i=0;i<(int) _particle_list.size();i++){
+ // if a particle is colinear with the beam (infinite rapidity)
+ // we do not take it into account
+ //if (fabs(_particle_list[i].pz)!=_particle_list[i].E){
+ plist.push_back(_particle_list[i]);
+ pincluded.push_back(siscone::Cvicinity_inclusion()); // zero inclusion status
+
+ // the parent_index is handled in the split_merge because
+ // of our multiple-pass procedure.
+ // Hence, it is not required here any longer.
+ // plist[n_part].parent_index = i;
+ plist[n_part].index = n_part;
+
+ // make sure the reference is randomly created
+ plist[n_part].ref.randomize();
+
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ if (fabs(plist[n_part].eta)>eta_max) eta_max=fabs(plist[n_part].eta);
+#endif
+ n_part++;
+ //}
+ }
+
+ // allocate quadtree and vicinity_elm list
+ // note: we set phi in [-pi:pi] as it is the natural range for atan2!
+ ve_list = new CSphvicinity_elm[2*n_part];
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ eta_max+=0.1;
+ quadtree = new siscone::Cquadtree(0.0, 0.0, eta_max, M_PI);
+#endif
+
+ // append particle to the vicinity_elm list
+ j = 0;
+ for (i=0;i<n_part;i++){
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ quadtree->add(&plist[i]);
+#endif
+ ve_list[j].v = ve_list[j+1].v = &plist[i];
+ ve_list[j].is_inside = ve_list[j+1].is_inside = &(pincluded[i]);
+ j+=2;
+ }
+
+}
+
+
+/*
+ * build the vicinity list from a list of points.
+ * - _parent reference particle
+ * - _VR vicinity radius
+ ************************************************************/
+void CSphvicinity::build(CSphmomentum *_parent, double _VR){
+ int i;
+
+ // set parent and radius
+ parent = _parent;
+
+ VR = _VR;
+ VR2 = VR*VR;
+ cosVR = cos(VR);
+ R2 = 0.25*VR2;
+ R = 0.5*VR;
+ double tmp = tan(R);
+ tan2R = tmp*tmp;
+
+ D2_R = 2.0*(1-cos(R));
+ //tmp = sqrt(D2_R);
+ inv_R_EPS_COCIRC = 1.0 / R / EPSILON_COCIRCULAR;
+ inv_R_2EPS_COCIRC = 0.5 / R / EPSILON_COCIRCULAR;
+
+ // clear vicinity
+ vicinity.clear();
+
+ // init parent variables
+ // we cpte the direction of the centre and two orthogonal ones
+ // to measure the angles. Those are taken orthogonal to the
+ // axis of smallest components (of the centre) to increase precision
+ parent_centre = (*parent)/parent->_norm;
+ parent_centre.get_angular_directions(angular_dir1, angular_dir2);
+ angular_dir1 /= angular_dir1._norm;
+ angular_dir2 /= angular_dir2._norm;
+
+ // really browse the particle list
+ for (i=0;i<n_part;i++){
+ append_to_vicinity(&plist[i]);
+ }
+
+ // sort the vicinity
+ sort(vicinity.begin(), vicinity.end(), ve_less);
+
+ vicinity_size = vicinity.size();
+}
+
+
+/// strictly increasing function of the angle
+//TODO//
+inline double sort_angle(double s, double c){
+ if (s==0) return (c>0) ? 0.0 : 2.0;
+ double t=c/s;
+ return (s>0) ? 1-t/(1+fabs(t)) : 3-t/(1+fabs(t));
+}
+
+
+/*
+ * append a particle to the 'vicinity' list after
+ * having computed the angular-ordering quantities
+ * - v vector to test
+ **********************************************************/
+void CSphvicinity::append_to_vicinity(CSphmomentum *v){
+ // skip the particle itself)
+ if (v==parent)
+ return;
+
+ int i=2*(v->index);
+
+ // compute the distance of the i-th particle with the parent
+ double dot = dot_product3(parent_centre,*v);
+ CSph3vector vnormal = *v;
+ vnormal/=v->_norm;
+ dot/=v->_norm;
+
+ // really check if the distance is less than VR
+ if (dot>cosVR){
+ CSph3vector cross = cross_product3(parent_centre,vnormal);
+
+ // for the centres
+ CSph3vector median = (parent_centre+vnormal);
+ double amplT = sqrt((tan2R*(1+dot)+(dot-1))*(1+dot));
+ CSph3vector transverse = amplT*cross/cross._norm;
+
+ // first angle (+)
+ ve_list[i].centre = median + transverse;
+ ve_list[i].centre.build_norm();
+ ve_list[i].centre/=ve_list[i].centre._norm;
+ CSph3vector diff = ve_list[i].centre - parent_centre;
+ //ve_list[i].angle = atan2(dot_product3(angular_dir2, diff),dot_product3(angular_dir1, diff));
+ ve_list[i].angle = sort_angle(dot_product3(angular_dir2, diff),dot_product3(angular_dir1, diff));
+ ve_list[i].side = true;
+ ve_list[i].cocircular.clear();
+ vicinity.push_back(&(ve_list[i]));
+
+ // second angle (-)
+ ve_list[i+1].centre = median - transverse;
+ ve_list[i+1].centre.build_norm();
+ ve_list[i+1].centre/=ve_list[i+1].centre._norm;
+ diff = ve_list[i+1].centre - parent_centre;
+ ve_list[i+1].angle = sort_angle(dot_product3(angular_dir2, diff),dot_product3(angular_dir1, diff));
+ ve_list[i+1].side = false;
+ ve_list[i+1].cocircular.clear();
+ vicinity.push_back(&(ve_list[i+1]));
+
+ // now work out the cocircularity range for the two points (range
+ // of angle within which the points stay within a distance
+ // EPSILON_COCIRCULAR of circule
+ // P = parent; C = child; O = Origin (center of circle)
+ CSph3vector OP = parent_centre - ve_list[i+1].centre;
+ CSph3vector OC = vnormal - ve_list[i+1].centre;
+
+ // two sources of error are (GPS CCN29-19) epsilon/(R sin theta)
+ // and sqrt(2*epsilon/(R (1-cos theta))) and the way things work
+ // out, it is the _smaller_ of the two that is relevant [NB have
+ // changed definition of theta here relative to that used in
+ // CCN29] [NB2: write things so as to avoid zero denominators and
+ // to minimize the multiplications, divisions and above all sqrts
+ // -- that means that c & s are defined including a factor of VR2]
+ double inv_err1 = cross_product3(OP,OC)._norm * inv_R_EPS_COCIRC;
+ double inv_err2_sq = (D2_R-dot_product3(OP,OC)) * inv_R_2EPS_COCIRC;
+ ve_list[i].cocircular_range = siscone::pow2(inv_err1) > inv_err2_sq ?
+ 1.0/inv_err1 :
+ sqrt(1.0/inv_err2_sq);
+ ve_list[i+1].cocircular_range = ve_list[i].cocircular_range;
+ }
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/spherical/vicinity.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/protocones.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/protocones.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/protocones.h (revision 420)
@@ -0,0 +1,262 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: protocones.h //
+// Description: header file for stable cones determination (Cstable_cones) //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_PROTOCONES_H__
+#define __SPH_PROTOCONES_H__
+
+#include "momentum.h"
+#include "vicinity.h"
+#include <stdio.h>
+#include <vector>
+#include <list>
+#include "hash.h"
+
+#include <siscone/defines.h>
+
+namespace siscone_spherical{
+
+/**
+ * \class CSphborder_store
+ *
+ * class for storing a border momentum (in context of co-circularity
+ * checks).
+
+ * This class essentially calculates angle of border point w.r.t.
+ * circle center (eta & phi), and provides a store of information
+ * about whether we are currently including this point in the
+ * candidate
+ */
+class CSphborder_store{
+public:
+ /// default ctor
+ CSphborder_store(CSphmomentum * momentum, CSph3vector &centre, CSph3vector &angl_dir1, CSph3vector &angl_dir2) :
+ mom(momentum), is_in(false) {
+ CSph3vector diff = (*momentum) - centre;
+ angle = atan2(dot_product3(diff, angl_dir2), dot_product3(diff, angl_dir1));
+#ifdef DEBUG_STABLE_CONES
+ std::cout << " adding point " << momentum->_theta << ", " << momentum->_phi
+ << " at an angle of " << angle << std::endl;
+#endif
+ }
+
+ CSphmomentum * mom; ///< particle momentum
+ double angle; ///< angle w.r.t. circle centre
+ bool is_in; ///< inclusion status of the particle
+};
+
+
+/// allows easy sorting of CSphborder_store objects (which need to be
+/// ordered in angle).
+inline bool operator<(const CSphborder_store & a, const CSphborder_store & b) {
+ return a.angle < b.angle;
+}
+
+
+/**
+ * \class CSphstable_cones
+ * \brief Computes the list of stable comes from a particle list.
+ *
+ * This class does the first fundamental task of te cone algorithm:
+ * it is used to compute the list of stable cones given a list
+ * of particles.
+ */
+class CSphstable_cones : public CSphvicinity{
+ public:
+ /// default ctor
+ CSphstable_cones();
+
+ /// ctor with initialisation (sse init for details)
+ CSphstable_cones(std::vector<CSphmomentum> &_particle_list);
+
+ /// default dtor
+ ~CSphstable_cones();
+
+ /**
+ * initialisation
+ * \param _particle_list list of particles
+ */
+ void init(std::vector<CSphmomentum> &_particle_list);
+
+ /**
+ * compute stable cones.
+ * This function really does the job i.e. computes
+ * the list of stable cones (in a seedless way)
+ * \param _radius radius of the cones
+ * \return The number of stable cones found is returned
+ */
+ int get_stable_cones(double _radius);
+
+ /// list of stable cones
+ std::vector<CSphmomentum> protocones;
+
+ /// list of candidates
+ sph_hash_cones *hc;
+
+ /// total number of tested cones
+ int nb_tot;
+#ifdef DEBUG_STABLE_CONES
+ int nb_hash_cones, nb_hash_occupied;
+#endif
+
+ protected:
+ /// cone radius
+ double R;
+
+ /// cone radius SQUARED
+ double R2;
+
+ /// squared tangent of the cone radius
+ double tan2R;
+
+ private:
+ /// cone with a given particle as parent
+ /// this reduction to a single vector assumes we trust the checksums
+ CSphmomentum cone;
+
+ /// child particle, taken in the 'vicinity' list
+ CSphmomentum *child;
+
+ /// centre of the tested cone
+ CSphvicinity_elm *centre;
+
+ /// index in the particle list;
+ unsigned int centre_idx;
+
+ /// first cone used in the vicinity list
+ unsigned int first_cone;
+
+ /**
+ * initialise the cone.
+ * We take the first particle in the angular ordering to compute this one
+ * \return 0 on success, 1 on error
+ */
+ int init_cone();
+
+ /**
+ * test cones.
+ * We check if the cone(s) build with the present parent and child
+ * are stable
+ * \return 0 on success 1 on error
+ */
+ int test_cone();
+
+ /**
+ * update the cone
+ * go to the next child for that parent and update 'cone' appropriately
+ * \return 0 if update candidate found, 1 otherwise
+ */
+ int update_cone();
+
+ /*
+ * run through the vicinity of the current parent and for each child
+ * indicate which members are cocircular...
+ */
+ void prepare_cocircular_lists();
+
+ /**
+ * check if we are in a situation of cocircularity.
+ * if it is the case, update and test in the corresponding way
+ * \return 'false' if no cocircularity detected, 'true' otherwise
+ * Note that if cocircularity is detected, we need to
+ * recall 'update' from 'update' !!!
+ */
+ bool cocircular_check();
+
+ /**
+ * Routine for testing cocircular configurations in p^3 time,
+ * rather than 2^p time;
+ */
+ void test_cone_cocircular(CSphmomentum & borderless_cone,
+ std::list<CSphmomentum *> & border_list);
+
+ /**
+ * carry out the computations needed for the stability check of the
+ * candidate, using the border_vect to indicate which particles
+ * should / should not be in the stable cone; if the cone is stable
+ * insert it into the hash.
+ */
+ void test_stability(CSphmomentum & candidate,
+ const std::vector<CSphborder_store> & border_vect);
+
+ /**
+ * compute the cone contents by going once around the full set of
+ * circles and tracking the entry/exit status each time -- this sets
+ * up the inclusion information, which can then be directly used to
+ * calculate the cone momentum.
+ */
+ void compute_cone_contents();
+
+ /**
+ * compute the cone momentum from particle list.
+ * in this version, we use the 'pincluded' information
+ * from the CSphvicinity class
+ */
+ void recompute_cone_contents();
+
+ /*
+ * if we have gone beyond the acceptable threshold of change, compute
+ * the cone momentum from particle list. in this version, we use the
+ * 'pincluded' information from the CSphvicinity class, but we don't
+ * change the member cone, only the locally supplied one
+ */
+ void recompute_cone_contents_if_needed(CSphmomentum & this_cone, double & this_dpt);
+
+ /**
+ * compute stability of all enumerated candidates.
+ * For all candidate cones which are stable w.r.t. their border particles,
+ * pass the last test: stability with quadtree intersection
+ */
+ int proceed_with_stability();
+
+ /*
+ * circle intersection.
+ * computes the intersection with a circle of given centre and radius.
+ * The output takes the form of a checkxor of the intersection's particles
+ * - cx circle centre x coordinate
+ * - cy circle centre y coordinate
+ * return the checkxor for the intersection
+ ******************************************************************/
+ siscone::Creference circle_intersect(CSph3vector &cone_centre);
+
+ /// present candidate cone
+ CSphmomentum cone_candidate;
+
+ /// in case of co-circular points, vector for them
+ std::vector<CSphmomentum*> child_list;
+
+ /// list of cocircular enclusures already studied
+ /// first element if cone contents, second is cone border
+ std::vector< std::pair<siscone::Creference,siscone::Creference> > multiple_centre_done;
+
+ // information for updating cone contents to avoid rounding errors
+ double dpt; ///< sums of Delta P_t
+};
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/protocones.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/momentum.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/momentum.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/momentum.cpp (revision 420)
@@ -0,0 +1,294 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: momentum.cpp //
+// Description: source file for 4-momentum class Cmomentum //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "momentum.h"
+#include <math.h>
+#include <stdlib.h>
+
+namespace siscone_spherical{
+
+/*************************************************************************
+ * class CSph3vector *
+ * This class contains the information for particle or group of *
+ * particles management. *
+ *************************************************************************/
+
+// default ctor
+//--------------
+CSph3vector::CSph3vector(){
+ _theta = _phi = _norm = 0.0;
+ px = py = pz = 0.0;
+ ref = siscone::Creference();
+}
+
+// ctor with initialisation
+//--------------------------
+CSph3vector::CSph3vector(double _px, double _py, double _pz){
+ px = _px;
+ py = _py;
+ pz = _pz;
+
+ // compute the norm
+ build_norm();
+
+ ref = siscone::Creference();
+}
+
+// default dtor
+//--------------
+CSph3vector::~CSph3vector(){
+
+}
+
+
+// assignment of vectors
+//-----------------------
+CSph3vector& CSph3vector::operator = (const CSph3vector &v){
+ px = v.px;
+ py = v.py;
+ pz = v.pz;
+
+ _norm = v._norm;
+ _theta = v._theta;
+ _phi = v._phi;
+
+ ref = v.ref;
+ return *this;
+}
+
+// addition of vectors
+//------------------------------------------------
+const CSph3vector CSph3vector::operator + (const CSph3vector &v){
+ CSph3vector tmp = *this;
+ return tmp+=v;
+}
+
+// subtraction of vectors
+//------------------------------------------------
+const CSph3vector CSph3vector::operator - (const CSph3vector &v){
+ CSph3vector tmp = *this;
+ return tmp-=v;
+}
+
+// division by constant
+//------------------------------------------------
+const CSph3vector CSph3vector::operator / (const double &r){
+ CSph3vector tmp = *this;
+ return tmp/=r;
+}
+
+// incrementation
+//------------------------------------------------
+CSph3vector& CSph3vector::operator += (const CSph3vector &v){
+ px+=v.px;
+ py+=v.py;
+ pz+=v.pz;
+
+ return *this;
+}
+
+// decrementation
+//------------------------------------------------
+CSph3vector& CSph3vector::operator -= (const CSph3vector &v){
+ px-=v.px;
+ py-=v.py;
+ pz-=v.pz;
+
+ return *this;
+}
+
+// multiplication by a constant
+//------------------------------------------------
+CSph3vector& CSph3vector::operator *= (const double &r){
+ px*=r;
+ py*=r;
+ pz*=r;
+
+ return *this;
+}
+
+// division by a constant
+//------------------------------------------------
+CSph3vector& CSph3vector::operator /= (const double &r){
+ px/=r;
+ py/=r;
+ pz/=r;
+
+ _norm/=r;
+
+ return *this;
+}
+
+// build norm from 3-momentum info
+void CSph3vector::build_norm(){
+ _norm = norm();
+}
+
+// build norm from 3-momentum info
+void CSph3vector::build_thetaphi(){
+ _theta = theta();
+ _phi = phi();
+}
+
+
+// for this direction, compute the two reference directions
+// used to measure angles
+void CSph3vector::get_angular_directions(CSph3vector &angular_dir1, CSph3vector &angular_dir2){
+ if (px < py){
+ if (pz < px){
+ // z smallest
+ angular_dir1 = CSph3vector(-py, px, 0.0);
+ } else {
+ // x smallest
+ angular_dir1 = CSph3vector(0.0, -pz, py);
+ }
+ } else {
+ if (pz < py){
+ // z smallest
+ angular_dir1 = CSph3vector(-py, px, 0.0);
+ } else {
+ // y smallest
+ angular_dir1 = CSph3vector(-pz, 0.0, px);
+ }
+ }
+ angular_dir2 = cross_product3(*this, angular_dir1);
+ // We'll simply take x & y so the reflection symmetry is not broken
+ //angular_dir1 = CSph3vector(0.0, -pz, py);
+ //angular_dir2 = CSph3vector(-pz, 0.0, -px);
+}
+
+/*************************************************************************
+ * class CSphmomentum *
+ * This class contains the information for particle or group of *
+ * particles management. *
+ * It includes all Lorentz properties as well as tools for summing them. *
+ *************************************************************************/
+
+// default ctor
+//--------------
+CSphmomentum::CSphmomentum(){
+ E=0.0;
+ index = -1;
+}
+
+// ctor with initialisation
+//--------------------------
+CSphmomentum::CSphmomentum(double _px, double _py, double _pz, double _E)
+ : CSph3vector(_px, _py, _pz) {
+ E = _E;
+
+ // compute the angles
+ build_thetaphi();
+}
+
+// ctor with initialisation
+//--------------------------
+CSphmomentum::CSphmomentum(CSph3vector &_v, double _E)
+ : CSph3vector(_v.px, _v.py, _v.pz) {
+ E = _E;
+}
+
+// default dtor
+//--------------
+CSphmomentum::~CSphmomentum(){
+
+}
+
+// assignment of vectors
+//-----------------------
+CSphmomentum& CSphmomentum::operator = (const CSphmomentum &v){
+ px = v.px;
+ py = v.py;
+ pz = v.pz;
+ E = v.E;
+
+ _norm = v._norm;
+ _theta = v._theta;
+ _phi = v._phi;
+
+ ref = v.ref;
+ return *this;
+}
+
+// addition of vectors
+// !!! WARNING !!! no updating of eta and phi !!!
+//------------------------------------------------
+const CSphmomentum CSphmomentum::operator + (const CSphmomentum &v){
+ CSphmomentum tmp = *this;
+ return tmp+=v;
+}
+
+// incrementation of vectors
+// !!! WARNING !!! no updating of eta and phi !!!
+//------------------------------------------------
+CSphmomentum& CSphmomentum::operator += (const CSphmomentum &v){
+ px+=v.px;
+ py+=v.py;
+ pz+=v.pz;
+ E +=v.E;
+
+ ref+=v.ref;
+
+ return *this;
+}
+
+// decrementation of vectors
+// !!! WARNING !!! no updating of eta and phi !!!
+//------------------------------------------------
+CSphmomentum& CSphmomentum::operator -= (const CSphmomentum &v){
+ px-=v.px;
+ py-=v.py;
+ pz-=v.pz;
+ E -=v.E;
+
+ ref-=v.ref;
+ return *this;
+}
+
+
+// ordering of two vectors
+// the default ordering is w.r.t. their references
+//-------------------------------------------------
+bool operator < (const CSphmomentum &v1, const CSphmomentum &v2){
+ return v1.ref < v2.ref;
+}
+
+// ordering of vectors in eta (e.g. used in collinear tests)
+//-----------------------------------------------------------
+bool momentum_theta_less(const CSphmomentum &v1, const CSphmomentum &v2){
+ return v1._theta < v2._theta;
+}
+
+// ordering of vectors in pt
+//---------------------------
+bool momentum_pt_less(const CSphmomentum &v1, const CSphmomentum &v2){
+ return v1.perp2() < v2.perp2();
+}
+
+}
+
Property changes on: tags/siscone-3.0.4/siscone/spherical/momentum.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/vicinity.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/vicinity.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/vicinity.h (revision 420)
@@ -0,0 +1,149 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: vicinity.h //
+// Description: header file for particle vicinity (Cvicinity class) //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_VICINITY_H__
+#define __SPH_VICINITY_H__
+
+#include <siscone/vicinity.h>
+#include <vector>
+#include <list>
+#include "momentum.h"
+#include <siscone/defines.h>
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+#include <siscone/quadtree.h>
+#endif
+
+namespace siscone_spherical{
+
+
+/**
+ * \class CSphvicinity_elm
+ * \brief element in the vicinity of a parent.
+ *
+ * class used to manage one points in the vicinity
+ * of a parent point.
+ */
+class CSphvicinity_elm{
+ public:
+ /// pointer to the second borderline particle
+ CSphmomentum *v;
+
+ /// variable to tell if the particle is inside or outside the cone
+ siscone::Cvicinity_inclusion *is_inside;
+
+ // centre variables
+ CSph3vector centre; ///< direction of the centre
+ double angle; ///< angle with parent
+ bool side; ///< true if angle on the positive side, false otherwise
+ double cocircular_range; ///< amount by which the angle can be varied while
+ ///< maintaining this point within co-circularity margin
+
+ /// list of elements co-circular with this one
+ /// NB: empty list uses less mem than vector
+ std::list<CSphvicinity_elm * > cocircular;
+};
+
+/// ordering pointers to CSphvicinity_elm
+bool ve_less(CSphvicinity_elm *ve1, CSphvicinity_elm *ve2);
+
+
+/**
+ * \class CSphvicinity
+ * \brief list of element in the vicinity of a parent.
+ *
+ * class used to manage the points which are in the vicinity
+ * of a parent point.
+ */
+class CSphvicinity{
+ public:
+ /// default constructor
+ CSphvicinity();
+
+ /// constructor with initialisation (see set_particle_list)
+ CSphvicinity(std::vector<CSphmomentum> &_particle_list);
+
+ /// default destructor
+ ~CSphvicinity();
+
+ /**
+ * set the particle_list
+ * \param _particle_list list of particles (type CSphmomentum)
+ */
+ void set_particle_list(std::vector<CSphmomentum> &_particle_list);
+
+ /**
+ * build the vicinity list from the list of points.
+ * \param _parent reference particle
+ * \param _VR vicinity radius
+ */
+ void build(CSphmomentum *_parent, double _VR);
+
+ // cone kinematical information
+ CSphmomentum *parent; ///< parent vector
+ double VR; ///< radius of the vicinity
+ double VR2; ///< squared radius of the vicinity
+ double cosVR; ///< cosine of the radius of the vicinity
+ double R; ///< normal radius
+ double R2; ///< squared normal radius
+ double tan2R; ///< squared tangent of the normal radius
+ double D2_R; ///< euclidian distance (squared) corresp. to the arc R
+ double inv_R_EPS_COCIRC; ///< R / EPSILON_COCIRCULAR
+ double inv_R_2EPS_COCIRC; ///< R / (2*EPSILON_COCIRCULAR)
+
+ // particle list information
+ int n_part; ///< number of particles
+ std::vector<CSphmomentum> plist; ///< the list of particles
+ /// the inclusion state of particles
+ std::vector<siscone::Cvicinity_inclusion> pincluded;
+ CSphvicinity_elm *ve_list; ///< list of vicinity elements built from particle list (size=2*n)
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ siscone::Cquadtree *quadtree; ///< quadtree used for final stability tests
+#endif
+
+ // vicinity information
+ std::vector<CSphvicinity_elm*> vicinity; ///< list of points in parent's vicinity
+ unsigned int vicinity_size; ///< number of elements in vicinity
+
+ protected:
+ /**
+ * append a particle to the 'vicinity' list after
+ * having tested it and computed the angular-ordering quantities
+ * \param v vector to test
+ */
+ void append_to_vicinity(CSphmomentum *v);
+
+ // internal variables
+ CSph3vector parent_centre; ///< parent centre
+ CSph3vector angular_dir1; ///< main direction to measure angles
+ CSph3vector angular_dir2; ///< second direction to measure angles (sign)
+};
+
+}
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/vicinity.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/siscone.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/siscone.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/siscone.cpp (revision 420)
@@ -0,0 +1,297 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: siscone.cpp //
+// Description: source file for the main SISCone class //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <siscone/config.h>
+#include <siscone/ranlux.h>
+#include <siscone/siscone_error.h>
+#include <siscone/defines.h>
+#include "momentum.h"
+#include "siscone.h"
+#include <iostream>
+#include <sstream>
+#include <iomanip>
+
+namespace siscone_spherical{
+using namespace std;
+
+/***************************************************************
+ * CSphsiscone implementation *
+ * final class: gather everything to compute the jet contents. *
+ * *
+ * This is the class user should use. *
+ * It computes the jet contents of a list of particles *
+ * given a cone radius and a threshold for splitting/merging. *
+ ***************************************************************/
+
+// default ctor
+//--------------
+CSphsiscone::CSphsiscone(){
+ rerun_allowed = false;
+}
+
+// default dtor
+//--------------
+CSphsiscone::~CSphsiscone(){
+ rerun_allowed = false;
+}
+
+bool CSphsiscone::init_done=false;
+std::ostream* CSphsiscone::_banner_ostr=&cout;
+
+/*
+ * compute the jets from a given particle set doing multiple passes
+ * such pass N looks for jets among all particles not put into jets
+ * during previous passes.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _f shared energy threshold for splitting&merging
+ * - _n_pass_max maximum number of runs
+ * - _Emin minimum energy of the protojets
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: using pt leads to IR unsafety for some events with momentum
+ * conservation. So we strongly advise not to change the default
+ * value.
+ * return the number of jets found.
+ **********************************************************************/
+int CSphsiscone::compute_jets(vector<CSphmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max, double _Emin,
+ Esplit_merge_scale _split_merge_scale){
+ // make sure things are initialised
+ _initialise_if_needed();
+
+ // run some general safety tests (NB: f will be checked in split-merge)
+ if (_radius <= 0.0 || _radius >= 0.5*M_PI) {
+ ostringstream message;
+ message << "Illegal value for cone radius, R = " << _radius
+ << " (legal values are 0<R<pi/2)";
+ throw siscone::Csiscone_error(message.str());
+ }
+
+
+
+ ptcomparison.split_merge_scale = _split_merge_scale;
+ partial_clear(); // make sure some things are initialised properly
+
+ // init the split_merge algorithm with the initial list of particles
+ // this initialises particle list p_left of remaining particles to deal with
+ init_particles(_particles);
+
+ bool finished = false;
+
+ rerun_allowed = false;
+ protocones_list.clear();
+
+#ifdef DEBUG_STABLE_CONES
+ nb_hash_cones_total = 0;
+ nb_hash_occupied_total = 0;
+#endif
+
+ do{
+ // initialise stable_cone finder
+ // here we use the list of remaining particles
+ // AFTER COLLINEAR CLUSTERING !!!!!!
+ CSphstable_cones::init(p_uncol_hard);
+
+ // get stable cones
+ if (get_stable_cones(_radius)){
+ // we have some new protocones.
+ // add them to candidates
+ protocones_list.push_back(protocones);
+ add_protocones(&protocones, R2, _Emin);
+#ifdef DEBUG_STABLE_CONES
+ nb_hash_cones_total += nb_hash_cones;
+ nb_hash_occupied_total += nb_hash_occupied;
+#endif
+ } else {
+ // no new protocone: leave
+ finished=true;
+ }
+
+ _n_pass_max--;
+ } while ((!finished) && (n_left>0) && (_n_pass_max!=0));
+
+ rerun_allowed = true;
+
+ // split & merge
+ return perform(_f, _Emin);
+}
+
+/*
+ * compute the jets from a given particle set doing multiple passes
+ * such pass N looks for jets among all particles not put into jets
+ * during previous passes.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _n_pass_max maximum number of runs
+ * - _Emin minimum energy of the protojets
+ * - _ordering_scale the ordering scale to decide which stable
+ * cone is removed
+ * return the number of jets found.
+ **********************************************************************/
+int CSphsiscone::compute_jets_progressive_removal(vector<CSphmomentum> &_particles, double _radius,
+ int _n_pass_max, double _Emin,
+ Esplit_merge_scale _ordering_scale){
+ // make sure things are initialised
+ _initialise_if_needed();
+
+ // run some general safety tests (NB: f will be checked in split-merge)
+ if (_radius <= 0.0 || _radius >= 0.5*M_PI) {
+ ostringstream message;
+ message << "Illegal value for cone radius, R = " << _radius
+ << " (legal values are 0<R<pi/2)";
+ throw siscone::Csiscone_error(message.str());
+ }
+
+ ptcomparison.split_merge_scale = _ordering_scale;
+ partial_clear(); // make sure some things are initialised properly
+
+ // init the split_merge algorithm with the initial list of particles
+ // this initialises particle list p_left of remaining particles to deal with
+ //
+ // this stores the "processed" particles in p_uncol_hard
+ init_particles(_particles);
+ jets.clear();
+
+ bool unclustered_left;
+ rerun_allowed = false;
+ protocones_list.clear();
+
+ do{
+ //cout << n_left << " particle left" << endl;
+
+ // initialise stable_cone finder
+ // here we use the list of remaining particles
+ // AFTER COLLINEAR CLUSTERING !!!!!!
+ CSphstable_cones::init(p_uncol_hard);
+
+ // get stable cones (stored in 'protocones')
+ unclustered_left = get_stable_cones(_radius);
+
+ // add the hardest stable cone to the list of jets
+ if (add_hardest_protocone_to_jets(&protocones, R2, _Emin)) break;
+
+ _n_pass_max--;
+ } while ((unclustered_left) && (n_left>0) && (_n_pass_max!=0));
+
+ // split & merge
+ return jets.size();
+}
+/*
+ * recompute the jets with a different overlap parameter.
+ * we use the same particles and R as in the preceeding call.
+ * - _f shared energy threshold for splitting&merging
+ * - _Emin minimum Energy of the protojets
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: using pt leads to IR unsafety for some events with momentum
+ * conservation. So we strongly advise not to change the default
+ * value.
+ * return the number of jets found, -1 if recomputation not allowed.
+ ********************************************************************/
+int CSphsiscone::recompute_jets(double _f, double _Emin,
+ Esplit_merge_scale _split_merge_scale){
+ if (!rerun_allowed)
+ return -1;
+
+ ptcomparison.split_merge_scale = _split_merge_scale;
+
+ // restore particle list
+ partial_clear();
+ init_pleft();
+
+ // initialise split/merge algorithm
+ unsigned int i;
+ for (i=0;i<protocones_list.size();i++)
+ add_protocones(&(protocones_list[i]), R2, _Emin);
+
+ // split & merge
+ return perform(_f, _Emin);
+}
+
+
+// make sure things are initialised
+void CSphsiscone::_initialise_if_needed(){
+ // initialise random number generator
+ if (init_done) return;
+
+ // initialise random number generator
+ siscone::ranlux_init();
+
+ // do not do this again
+ init_done=true;
+
+ // print the banner
+ if (_banner_ostr != 0){
+ ios::fmtflags flags_to_restore(_banner_ostr->flags());
+
+ (*_banner_ostr) << "#ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo" << endl;
+ (*_banner_ostr) << "# SISCone version " << setw(28) << left << siscone_version() << "o" << endl;
+ (*_banner_ostr) << "# http://projects.hepforge.org/siscone o" << endl;
+ (*_banner_ostr) << "# o" << endl;
+ (*_banner_ostr) << "# This is SISCone: the Seedless Infrared Safe Cone Jet Algorithm o" << endl;
+ (*_banner_ostr) << "# SISCone was written by Gavin Salam and Gregory Soyez o" << endl;
+ (*_banner_ostr) << "# It is released under the terms of the GNU General Public License o" << endl;
+ (*_banner_ostr) << "# o" << endl;
+ (*_banner_ostr) << "# !!! WARNING !!! o" << endl;
+ (*_banner_ostr) << "# This is the version of SISCone using spherical coordinates o" << endl;
+ (*_banner_ostr) << "# o" << endl;
+ (*_banner_ostr) << "# A description of the algorithm is available in the publication o" << endl;
+ (*_banner_ostr) << "# JHEP 05 (2007) 086 [arXiv:0704.0292 (hep-ph)]. o" << endl;
+ (*_banner_ostr) << "# Please cite it if you use SISCone. o" << endl;
+ (*_banner_ostr) << "#ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo" << endl;
+ (*_banner_ostr) << endl;
+
+ _banner_ostr->flush();
+ _banner_ostr->flags(flags_to_restore);
+ }
+}
+
+// finally, a bunch of functions to access to
+// basic information (package name, version)
+//---------------------------------------------
+
+/*
+ * return SISCone package name.
+ * This is nothing but "SISCone", it is a replacement to the
+ * SISCONE_PACKAGE_NAME string defined in config.h and which is not
+ * guaranteed to be public.
+ * return the SISCone name as a string
+ */
+string siscone_package_name(){
+ return SISCONE_PACKAGE_NAME;
+}
+
+/*
+ * return SISCone version number.
+ * return a string of the form "X.Y.Z" with possible additional tag
+ * (alpha, beta, devel) to mention stability status
+ */
+string siscone_version(){
+ return SISCONE_VERSION;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/spherical/siscone.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/momentum.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/momentum.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/momentum.h (revision 420)
@@ -0,0 +1,312 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: momentum.h //
+// Description: header file for 4-momentum class Cmomentum //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_VECTOR_H__
+#define __SPH_VECTOR_H__
+
+#include <vector>
+#include <math.h>
+#include <siscone/reference.h>
+#include "geom_2d.h"
+#include <siscone/defines.h>
+
+namespace siscone_spherical{
+
+/**
+ * \class CSph3vector
+ * \brief base class for managing the spatial part of Cmomentum (defined after)
+ *
+ * This class contains the information for particle or group of
+ * particles management.
+ * It is adapted to use spherical geometry, where, for our purposes,
+ * the only time-consuming operation we need is the computation of
+ * the norm. To compute it once-and-for-all and store it in a local
+ * variable, you should call the 'build_norm' method.
+ * On top of that, the angle phi is computed from the x-axis
+ * and theta from the "north pole".
+ */
+class CSph3vector{
+ public:
+ /// default ctor
+ CSph3vector();
+
+ /// ctor with initialisation
+ CSph3vector(double _px, double _py, double _pz);
+
+ /// default dtor
+ ~CSph3vector();
+
+ /// assignment of vectors
+ CSph3vector& operator = (const CSph3vector &v);
+
+ /// addition of vectors
+ /// WARNING= norm is not updated
+ const CSph3vector operator + (const CSph3vector &v);
+
+ /// subtraction of vectors
+ /// WARNING= norm is not updated
+ const CSph3vector operator - (const CSph3vector &v);
+
+ /// division by a constant
+ /// WARNING= norm is not updated
+ const CSph3vector operator / (const double &r);
+
+ /// incrementation of vectors
+ /// WARNING= norm is not updated
+ CSph3vector& operator += (const CSph3vector &v);
+
+ /// decrementation of vectors
+ /// WARNING= norm is not updated
+ CSph3vector& operator -= (const CSph3vector &v);
+
+ /// multiplication by a constant
+ /// WARNING= norm is not updated
+ CSph3vector& operator *= (const double &r);
+
+ /// division by a constant
+ /// WARNING= norm is not updated
+ CSph3vector& operator /= (const double &r);
+
+ /// computes pT
+ inline double perp() const {return sqrt(perp2());}
+
+ /// computes pT^2
+ inline double perp2() const {return px*px+py*py;}
+
+ /// 3-vect norm
+ inline double norm() const {return sqrt(px*px+py*py+pz*pz);}
+
+ /// 3-vect norm squared
+ inline double norm2() const {return px*px+py*py+pz*pz;}
+
+ /// 3-vect azimuthal angle
+ inline double phi() const {return atan2(py, px);}
+
+ /// 3-vect polar angle
+ inline double theta() const {return atan2(perp(),pz);}
+
+ /// build the spatial normfrom 4-momentum info
+ /// !!! WARNING !!!
+ /// !!! computing the norm is the only time-consuming !!!
+ /// !!! information we need in all computations. !!!
+ /// !!! use this whenever you need repeated access !!!
+ /// !!! to the norm to store it in the local variable !!!
+ void build_norm();
+
+ /// just a useful tool to store theta and phi
+ /// locally (in _theta and _phi) in case you need
+ /// repeated access
+ void build_thetaphi();
+
+ /// for this direction, compute the two reference directions
+ /// used to measure angles
+ void get_angular_directions(CSph3vector &angular_dir1, CSph3vector &angular_dir2);
+
+ double px; ///< x-momentum
+ double py; ///< y-momentum
+ double pz; ///< z-momentum
+
+ double _norm; ///< particle spatial norm (available ONLY after a call to build_norm)
+ double _theta; ///< particle theta angle (available ONLY after a call to build_thetaphi)
+ double _phi; ///< particle phi angle (available ONLY after a call to build_thetaphi)
+
+ //////////////////////////////////////////////
+ // the following part is used for checksums //
+ //////////////////////////////////////////////
+ siscone::Creference ref; ///< reference number for the vector
+};
+
+/**
+ * \class CSphmomentum
+ * \brief base class for dynamic coordinates management
+ *
+ * This class contains the information for particle or group of
+ * particles management.
+ * It is adapted to use spherical geometry, where, for our purposes,
+ * the only time-consuming operation we need is the computation of
+ * the norm. To compute it once-and-for-all and store it in a local
+ * variable, you should call the 'build_norm' method.
+ * On top of that, the angle phi is computed from the x-axis
+ * and theta from the "north pole".
+ */
+class CSphmomentum : public CSph3vector{
+ public:
+ /// default ctor
+ CSphmomentum();
+
+ /// init from a 3-vect
+ CSphmomentum(CSph3vector &init, double E=0.0);
+
+ /// ctor with initialisation
+ CSphmomentum(double _px, double _py, double _pz, double _E);
+
+ /// ctor with detailed initialisation
+ //CSphmomentum(double _eta, double _phi, siscone::Creference _ref);
+
+ /// default dtor
+ ~CSphmomentum();
+
+ /// computes m
+ inline double mass() const {return sqrt(mass2());}
+
+ /// computes m^2
+ inline double mass2() const {return perpmass2()-perp2();}
+
+ /// transverse mass, mt = sqrt(pt^2+m^2) = sqrt(E^2 - pz^2)
+ inline double perpmass() const {return sqrt((E-pz)*(E+pz));}
+
+ /// transverse mass squared, mt^2 = pt^2+m^2 = E^2 - pz^2
+ inline double perpmass2() const {return (E-pz)*(E+pz);}
+
+ /// computes transverse energy
+ inline double Et() const {return E/sqrt(1.0+pz*pz/perp2());}
+
+ /// computes transverse energy (squared)
+ inline double Et2() const {return E*E/(1.0+pz*pz/perp2());}
+
+ /// assignment of vectors
+ CSphmomentum& operator = (const CSphmomentum &v);
+
+ /// addition of vectors
+ /// !!! WARNING !!! no updating of eta and phi !!!
+ const CSphmomentum operator + (const CSphmomentum &v);
+
+ /// incrementation of vectors
+ /// !!! WARNING !!! no updating of eta and phi !!!
+ CSphmomentum& operator += (const CSphmomentum &v);
+
+ /// decrementation of vectors
+ /// !!! WARNING !!! no updating of eta and phi !!!
+ CSphmomentum& operator -= (const CSphmomentum &v);
+
+ double E; ///< energy
+
+ int parent_index; ///< particle number in the parent list
+ int index; ///< internal particle number
+};
+
+/// ordering of two vectors
+/// this is by default done w.r.t. their references
+bool operator < (const CSphmomentum &v1, const CSphmomentum &v2);
+
+/// ordering of vectors in eta (e.g. used in collinear tests)
+bool momentum_theta_less(const CSphmomentum &v1, const CSphmomentum &v2);
+
+/// ordering of vectors in pt
+bool momentum_pt_less(const CSphmomentum &v1, const CSphmomentum &v2);
+
+
+//////////////////////////
+// some handy utilities //
+//////////////////////////
+
+/// square
+inline double sqr(double x){return x*x;}
+
+/// dot product for te spatial 3-vect
+/// \param v1 first 4-vect
+/// \param v2 second 4-vect
+inline double dot_product3(const CSph3vector &v1, const CSph3vector &v2){
+ //double tmp = v1.px*v2.px + v1.py*v2.py + v1.pz*v2.pz;
+ //if (!isfinite(tmp)){
+ // std::cout << "dot_product inf: " << std::endl;
+ // std::cout << " angles: " << v1._theta << " " << v1._phi << " and " << v2._theta << " " << v2._phi << std::endl;
+ // std::cout << " moms : " << v1.px << " " << v1.py << " " << v1.pz
+ // << " and " << v2.px << " " << v2.py << " " << v2.pz << std::endl;
+ //}
+ return v1.px*v2.px + v1.py*v2.py + v1.pz*v2.pz;
+}
+
+/// cross product for the spatial 3-vect
+/// \param v1 first 4-vect
+/// \param v2 second 4-vect
+inline CSph3vector cross_product3(const CSph3vector &v1, const CSph3vector &v2){
+ //CSph3vector tmp;
+ //tmp.px = v1.py*v2.pz-v1.pz*v2.py;
+ //tmp.py = v1.pz*v2.px-v1.px*v2.pz;
+ //tmp.pz = v1.px*v2.py-v1.py*v2.px;
+ //return tmp;
+ return CSph3vector(v1.py*v2.pz-v1.pz*v2.py,
+ v1.pz*v2.px-v1.px*v2.pz,
+ v1.px*v2.py-v1.py*v2.px);
+}
+
+/// squared norm of the cross product for the spatial 3-vect (energy is set to 0)
+/// \param v1 first 4-vect
+/// \param v2 second 4-vect
+inline double norm2_cross_product3(const CSph3vector &v1, const CSph3vector &v2){
+ return sqr(v1.py*v2.pz-v1.pz*v2.py) + sqr(v1.pz*v2.px-v1.px*v2.pz) + sqr(v1.px*v2.py-v1.py*v2.px);
+}
+
+/// get tangent squared of the spherical distance between two vectors
+/// \param v1 vector defining the first point
+/// \param v2 vector defining the second point
+inline double get_tan2_distance(const CSphmomentum &v1, const CSphmomentum &v2){
+ return norm2_cross_product3(v1,v2)/sqr(dot_product3(v1,v2));
+}
+
+/// get spherical distance between to vectors
+/// \param v1 vector defining the first point
+/// \param v2 vector defining the second point
+inline double get_distance(const CSph3vector *v1, const CSph3vector *v2){
+ return atan2(sqrt(norm2_cross_product3(*v1,*v2)), dot_product3(*v1,*v2));
+}
+
+/// return true if the two points are distant by less than get spherical distance between two vectors
+/// \param v1 vector defining the first point
+/// \param v2 vector defining the second point
+/// \param tan2R tangent squared of the max distance
+/// WARNING: using the tangent here is dangerous for R>pi/2.
+/// this never happens per se for "regular R" but
+/// it may in the vicinity computation as we're using
+/// 2R there.
+inline bool is_closer(const CSph3vector *v1, const CSph3vector *v2, const double tan2R){
+ double dot = dot_product3(*v1,*v2);
+ return (dot>=0) && (norm2_cross_product3(*v1,*v2)<=tan2R*dot*dot);
+}
+
+/// return true if the two points are distant by less than get spherical distance between to vectors
+/// \param v1 vector defining the first point
+/// \param v2 vector defining the second point
+/// \param tan2R tangent squared of the max distance
+/// safer version but computes the norm
+inline bool is_closer_safer(const CSph3vector *v1, const CSph3vector *v2, const double cosR){
+ return dot_product3(*v1,*v2)>=cosR*sqrt(v1->norm2()*v2->norm2());
+ //double dot = dot_product3(*v1,*v2);
+ //return (dot>=0) && (norm2_cross_product3(*v1,*v2)<tan2R*dot*dot);
+}
+
+/// multiply a vector by a constant
+/// WARNING: norm not updated
+inline CSph3vector operator * (const double &r, const CSph3vector &v){
+ CSph3vector tmp = v;
+ return tmp*=r;
+}
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/momentum.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/siscone.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/siscone.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/siscone.h (revision 420)
@@ -0,0 +1,173 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: siscone.h //
+// Description: header file for the main SISCone class //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_SISCONE_H__
+#define __SPH_SISCONE_H__
+
+#include "protocones.h"
+#include "split_merge.h"
+
+namespace siscone_spherical{
+
+/**
+ * \class CSphsiscone
+ * final class: gather everything to compute the jet contents.
+ *
+ * This is the class user should use.
+ * It computes the jet contents of a list of particles
+ * given a cone radius and a threshold for splitting/merging.
+ *
+ * After the call to 'perform', the vector jets is filled with
+ * the jets found. the 'contents' field of each jets contains
+ * the indices of the particles included in that jet.
+ */
+class CSphsiscone : public CSphstable_cones, public CSphsplit_merge{
+ public:
+ /// default ctor
+ CSphsiscone();
+
+ /// default dtor
+ ~CSphsiscone();
+
+ /**
+ * compute the jets from a given particle set.
+ * We are doing multiple passes such pass n_pass looks for jets among
+ * all particles not put into jets during previous passes.
+ * By default the number of passes is infinite (0).
+ * \param _particles list of particles
+ * \param _radius cone radius
+ * \param _f shared energy threshold for splitting&merging
+ * \param _n_pass_max maximum number of passes (0=full search)
+ * \param _Emin minimum energy of the protojets
+ * \param _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: SM_Etilde
+ * is always IR safe
+ * SM_E
+ * is IR unsafe for events with mom. conservation
+ *
+ * \return the number of jets found.
+ */
+ int compute_jets(std::vector<CSphmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max=0, double _Emin=0.0,
+ Esplit_merge_scale _split_merge_scale=SM_Etilde);
+
+ /**
+ * compute the jets from a given particle set.
+ * We are doing multiple passes such pass n_pass looks for jets among
+ * all particles not put into jets during previous passes.
+ * By default the number of passes is infinite (0).
+ * \param _particles list of particles
+ * \param _radius cone radius
+ * \param _n_pass_max maximum number of passes (0=full search)
+ * \param _Emin minimum energy of the protojets
+ * \param _ordering_scale the ordering scale to decide which stable
+ * cone is removed
+ *
+ * \return the number of jets found.
+ */
+ int compute_jets_progressive_removal(std::vector<CSphmomentum> &_particles, double _radius,
+ int _n_pass_max=0, double _Emin=0.0,
+ Esplit_merge_scale _ordering_scale=SM_Etilde);
+
+ /**
+ * recompute the jets with a different overlap parameter.
+ * we use the same particles and R as in the preceeding call.
+ * \param _f shared energy threshold for splitting&merging
+ * \param _Emin minimum energy of the protojets
+ * \param _split_merge_scale the scale choice for the split-merge procedure
+ * split--merge variable
+ * NOTE: using pt leads to IR unsafety for some events with momentum
+ * conservation. So we strongly advise not to change the default
+ * value.
+ * \return the number of jets found, -1 if recomputation not allowed.
+ */
+ int recompute_jets(double _f, double _Emin = 0.0,
+ Esplit_merge_scale _split_merge_scale=SM_Etilde);
+
+ /// list of protocones found pass-by-pass
+ std::vector<std::vector<CSphmomentum> > protocones_list;
+
+ // random number initialisation
+ static bool init_done; ///< check random generator initialisation
+
+#ifdef DEBUG_STABLE_CONES
+ int nb_hash_cones_total, nb_hash_occupied_total;
+#endif
+
+ /**
+ * A call to this function modifies the stream
+ * used to print banners (by default cout).
+ *
+ * Please note that if you distribute 3rd party code
+ * that links with SISCone, that 3rd party code must not
+ * use this call turn off the printing of thw banner
+ * by default. This requirement reflects the spirit of
+ * clause 2c of the GNU Public License (v2), under which
+ * SISCone is distributed.
+ */
+ static void set_banner_stream(std::ostream * ostr) {_banner_ostr = ostr;}
+
+ /**
+ * returns a pointer to the stream to be used to print banners
+ * (cout by default)
+ */
+ static std::ostream * banner_stream() {return _banner_ostr;}
+
+ private:
+ bool rerun_allowed; ///< is recompute_jets allowed ?
+ static std::ostream * _banner_ostr; ///< stream to use for banners
+
+ /// ensure things are initialised
+ void _initialise_if_needed();
+
+};
+
+
+// finally, a bunch of functions to access to
+// basic information (package name, version)
+//---------------------------------------------
+
+/**
+ * return SISCone package name.
+ * This is nothing but "SISCone", it is a replacement to the
+ * SISCONE_PACKAGE_NAME string defined in config.h and which is not
+ * guaranteed to be public.
+ * \return the SISCone name as a string
+ */
+std::string siscone_package_name();
+
+/**
+ * return SISCone version number.
+ * \return a string of the form "X.Y.Z" with possible additional tag
+ * (alpha, beta, devel) to mention stability status
+ */
+std::string siscone_version();
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/siscone.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/split_merge.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/split_merge.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/split_merge.cpp (revision 420)
@@ -0,0 +1,1201 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: split_merge.cpp //
+// Description: source file for splitting/merging (contains the CJet class) //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <siscone/siscone_error.h>
+#include "split_merge.h"
+#include "momentum.h"
+#include <limits> // for max
+#include <iostream>
+#include <algorithm>
+#include <sstream>
+#include <cassert>
+#include <cmath>
+
+namespace siscone_spherical{
+
+using namespace std;
+
+/********************************************************
+ * class CSphjet implementation *
+ * real Jet information. *
+ * This class contains information for one single jet. *
+ * That is, first, its momentum carrying information *
+ * about its centre and pT, and second, its particle *
+ * contents *
+ ********************************************************/
+// default ctor
+//--------------
+CSphjet::CSphjet(){
+ n = 0;
+ v = CSphmomentum();
+ E_tilde = 0.0;
+ sm_var2 = 0.0;
+ pass = CJET_INEXISTENT_PASS; // initialised to a value that should
+ // notappear in the end (after clustering)
+}
+
+// default dtor
+//--------------
+CSphjet::~CSphjet(){
+
+}
+
+// ordering of jets in E (e.g. used in final jets ordering)
+//----------------------------------------------------------
+bool jets_E_less(const CSphjet &j1, const CSphjet &j2){
+ return j1.v.E > j2.v.E;
+}
+
+
+/********************************************************
+ * CSphsplit_merge_ptcomparison implementation *
+ * This deals with the ordering of the jets candidates *
+ ********************************************************/
+
+// odering of two jets
+// The variable of the ordering is pt or mt
+// depending on 'split_merge_scale' choice
+//
+// with EPSILON_SPLITMERGE defined, this attempts to identify
+// delicate cases where two jets have identical momenta except for
+// softish particles -- the difference of pt's may not be correctly
+// identified normally and so lead to problems for the fate of the
+// softish particle.
+//
+// NB: there is a potential issue in momentum-conserving events,
+// whereby the harder of two jets becomes ill-defined when a soft
+// particle is emitted --- this may have a knock-on effect on
+// subsequent split-merge steps in cases with sufficiently large R
+// (but we don't know what the limit is...)
+//------------------------------------------------------------------
+bool CSphsplit_merge_ptcomparison::operator ()(const CSphjet &jet1, const CSphjet &jet2) const{
+ double q1, q2;
+
+ // compute the value for comparison for both jets
+ // This depends on the choice of variable (mt is the default)
+ q1 = jet1.sm_var2;
+ q2 = jet2.sm_var2;
+
+ bool res = q1 > q2;
+
+ // if we enable the refined version of the comparison (see defines.h),
+ // we compute the difference more precisely when the two jets are very
+ // close in the ordering variable.
+#ifdef EPSILON_SPLITMERGE
+ if ( (fabs(q1-q2) < EPSILON_SPLITMERGE*max(q1,q2)) &&
+ (jet1.v.ref != jet2.v.ref) ) {
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "Using high-precision ordering tests" << endl;
+#endif
+ // get the momentum of the difference
+ CSphmomentum difference;
+ double E_tilde_difference;
+ get_difference(jet1,jet2,&difference,&E_tilde_difference);
+
+ // use the following relation: pt1^2 - pt2^2 = (pt1+pt2)*(pt1-pt2)
+ double qdiff;
+ CSphmomentum sum = jet1.v ;
+ sum += jet2.v;
+ double E_tilde_sum = jet1.E_tilde + jet2.E_tilde;
+
+ // depending on the choice of ordering variable, set the result
+ switch (split_merge_scale){
+ case SM_Etilde:
+ qdiff = E_tilde_sum*E_tilde_difference;
+ break;
+ case SM_E:
+ qdiff = sum.E*difference.E;
+ break;
+ default:
+ throw siscone::Csiscone_error("Unsupported split-merge scale choice: "
+ + SM_scale_name());
+ }
+ res = qdiff > 0;
+ }
+#endif // EPSILON_SPLITMERGE
+
+ return res;
+}
+
+
+/// return a name for the sm scale choice
+/// NB: used internally and also by fastjet
+std::string split_merge_scale_name(Esplit_merge_scale sms) {
+ switch(sms) {
+ case SM_E:
+ return "E (IR unsafe for pairs of identical decayed heavy particles)";
+ case SM_Etilde:
+ return "Etilde (sum of E.[1+sin^2(theta_{i,jet})])";
+ default:
+ return "[SM scale without a name]";
+ }
+}
+
+
+// get the difference between 2 jets
+// - j1 first jet
+// - j2 second jet
+// - v jet1-jet2
+// - pt_tilde jet1-jet2 pt_tilde
+// return true if overlapping, false if disjoint
+//-----------------------------------------------
+void CSphsplit_merge_ptcomparison::get_difference(const CSphjet &j1, const CSphjet &j2,
+ CSphmomentum *v, double *E_tilde) const {
+ int i1,i2;
+
+ // initialise
+ i1=i2=0;
+ *v = CSphmomentum();
+ *E_tilde = 0.0;
+
+ CSph3vector jet1_axis = j1.v;
+ //jet1_axis /= j1.v._norm;
+ jet1_axis /= j1.v.E;
+ CSph3vector jet2_axis = j2.v;
+ //jet2_axis /= j2.v._norm;
+ jet2_axis /= j2.v.E;
+
+ // compute overlap
+ // at the same time, we store union in indices
+ // note tat for Etilde, we'll add the direct energy contributino at the end
+ do{
+ if (j1.contents[i1]==j2.contents[i2]) {
+ const CSphmomentum & p = (*particles)[j1.contents[i1]];
+ (*E_tilde) += p.E*((norm2_cross_product3(p,jet1_axis)-norm2_cross_product3(p,jet2_axis))/(*particles_norm2)[j1.contents[i1]]);
+ i1++;
+ i2++;
+ } else if (j1.contents[i1]<j2.contents[i2]){
+ const CSphmomentum & p = (*particles)[j1.contents[i1]];
+ (*v) += p;
+ (*E_tilde) += p.E*norm2_cross_product3(p,jet1_axis)/(*particles_norm2)[j1.contents[i1]];
+ i1++;
+ } else if (j1.contents[i1]>j2.contents[i2]){
+ const CSphmomentum &p = (*particles)[j2.contents[i2]];
+ (*v) -= p;
+ (*E_tilde) -= p.E*norm2_cross_product3(p,jet2_axis)/(*particles_norm2)[j2.contents[i2]];
+ i2++;
+ } else {
+ throw siscone::Csiscone_error("get_non_overlap reached part it should never have seen...");
+ }
+ } while ((i1<j1.n) && (i2<j2.n));
+
+ // deal with particles at the end of the list...
+ while (i1 < j1.n) {
+ const CSphmomentum &p = (*particles)[j1.contents[i1]];
+ (*v) += p;
+ (*E_tilde) += p.E*norm2_cross_product3(p,jet1_axis)/(*particles_norm2)[j1.contents[i1]];
+ i1++;
+ }
+ while (i2 < j2.n) {
+ const CSphmomentum &p = (*particles)[j2.contents[i2]];
+ (*v) -= p;
+ (*E_tilde) -= p.E*norm2_cross_product3(p,jet2_axis)/(*particles_norm2)[j2.contents[i2]];
+ i2++;
+ }
+
+ // add the direct energy contribution to Etilde
+ (*E_tilde) += v->E;
+}
+
+
+/********************************************************
+ * class CSphsplit_merge implementation *
+ * Class used to split and merge jets. *
+ ********************************************************/
+// default ctor
+//--------------
+CSphsplit_merge::CSphsplit_merge(){
+ merge_identical_protocones = false;
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+#ifdef MERGE_IDENTICAL_PROTOCONES_DEFAULT_TRUE
+ merge_identical_protocones = true;
+#endif
+#endif
+ _user_scale = NULL;
+ indices = NULL;
+
+ // ensure that ptcomparison points to our set of particles (though params not correct)
+ ptcomparison.particles = &particles;
+ ptcomparison.particles_norm2 = &particles_norm2;
+ candidates.reset(new multiset<CSphjet,CSphsplit_merge_ptcomparison>(ptcomparison));
+
+ // no hardest cut (col-unsafe)
+ SM_var2_hardest_cut_off = -numeric_limits<double>::max();
+
+ // no energy cutoff for the particles to put in p_uncol_hard
+ stable_cone_soft_E2_cutoff = -1.0;
+
+ // no pt-weighted splitting
+ use_E_weighted_splitting = false;
+}
+
+
+// default dtor
+//--------------
+CSphsplit_merge::~CSphsplit_merge(){
+ full_clear();
+}
+
+
+// initialisation function
+// - _particles list of particles
+// - protocones list of protocones (initial jet candidates)
+// - R2 cone radius (squared)
+// - Emin minimal energy allowed for jets
+//-------------------------------------------------------------
+int CSphsplit_merge::init(vector<CSphmomentum> & /*_particles*/, vector<CSphmomentum> *protocones, double R2, double Emin){
+ // browse protocones
+ return add_protocones(protocones, R2, Emin);
+}
+
+
+// initialisation function for particle list
+// - _particles list of particles
+//-------------------------------------------------------------
+int CSphsplit_merge::init_particles(vector<CSphmomentum> &_particles){
+ full_clear();
+
+ // compute the list of particles
+ // here, we do not need to throw away particles
+ // with infinite rapidity (colinear with the beam)
+ particles = _particles;
+ n = particles.size();
+
+ // store the particle norm^2
+ particles_norm2.resize(n);
+ for (int i=0;i<n;i++){
+ particles_norm2[i] = particles[i].norm2();
+ }
+
+ // ensure that ptcomparison points to our set of particles (though params not correct)
+ ptcomparison.particles = &particles;
+ ptcomparison.particles_norm2 = &particles_norm2;
+
+ // set up the list of particles left.
+ init_pleft();
+
+ indices = new int[n];
+
+ return 0;
+}
+
+
+// build initial list of remaining particles
+//------------------------------------------
+int CSphsplit_merge::init_pleft(){
+ // at this level, we only rule out particles with
+ // infinite rapidity
+ // in the parent particle list, index contain the run
+ // at which particles are puts in jets:
+ // - -1 means infinity rapidity
+ // - 0 means not included
+ // - i mean included at run i
+ int i,j;
+
+ // copy particles removing the ones with infinite rapidity
+ j=0;
+ p_remain.clear();
+ for (i=0;i<n;i++){
+ // set ref for checkxor
+ particles[i].ref.randomize();
+
+ //REMOVED: check if rapidity is not infinite or ill-defined
+ //if (fabs(particles[i].pz) < (particles[i].E)){
+ p_remain.push_back(particles[i]);
+ // set up parent index for tracability
+ p_remain[j].parent_index = i;
+ // left particles are marked with a 1
+ // IMPORTANT NOTE: the meaning of index in p_remain is
+ // somehow different as in the initial particle list.
+ // here, within one pass, we use the index to track whether
+ // a particle is included in the current pass (index set to 0
+ // in add_protocones) or still remain (index still 1)
+ p_remain[j].index = 1;
+
+ j++;
+ // set up parent-particle index
+ particles[i].index = 0;
+ //} else {
+ // particles[i].index = -1;
+ //}
+ }
+ n_left = p_remain.size();
+ n_pass = 0;
+
+ merge_collinear_and_remove_soft();
+
+ return 0;
+}
+
+
+// partial clearance
+// we want to keep particle list and indices
+// for future usage, so do not clear it !
+// this is done in full_clear
+//----------------------------------------
+int CSphsplit_merge::partial_clear(){
+ // release jets
+
+ // set up the auto_ptr for the multiset with the _current_ state of
+ // ptcomparison (which may have changed since we constructed the
+ // class)
+ candidates.reset(new multiset<CSphjet,CSphsplit_merge_ptcomparison>(ptcomparison));
+
+ // start off with huge number
+ most_ambiguous_split = numeric_limits<double>::max();
+
+ jets.clear();
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ if (merge_identical_protocones)
+ cand_refs.clear();
+#endif
+
+ p_remain.clear();
+
+ return 0;
+}
+
+
+// full clearance
+//----------------
+int CSphsplit_merge::full_clear(){
+ partial_clear();
+
+ // clear previously allocated memory
+ if (indices != NULL){
+ delete[] indices;
+ }
+ particles.clear();
+
+ return 0;
+}
+
+
+// build the list 'p_uncol_hard' from p_remain by clustering collinear particles
+// note that thins in only used for stable-cone detection
+// so the parent_index field is unnecessary
+//-------------------------------------------------------------------------
+int CSphsplit_merge::merge_collinear_and_remove_soft(){
+ int i,j;
+ vector<CSphmomentum> p_sorted;
+ bool collinear;
+ double dphi;
+
+ p_uncol_hard.clear();
+
+ // we first sort the particles according to their theta angle
+ for (i=0;i<n_left;i++)
+ p_sorted.push_back(p_remain[i]);
+ sort(p_sorted.begin(), p_sorted.end(), momentum_theta_less);
+
+ // then we cluster particles looping over the particles in the following way
+ // if (a particle i has same eta-phi a one after (j))
+ // then add momentum i to j
+ // else add i to the p_uncol_hard list
+ i = 0;
+ while (i<n_left){
+ // check if the particle passes the stable_cone_soft_E2_cutoff
+ if (p_sorted[i].E*p_sorted[i].E<stable_cone_soft_E2_cutoff) {
+ i++;
+ continue;
+ }
+
+ // check if there is(are) particle(s) with the 'same' theta
+ collinear = false;
+ j=i+1;
+ while ((j<n_left) && (fabs(p_sorted[j]._theta-p_sorted[i]._theta)<EPSILON_COLLINEAR) && (!collinear)){
+ dphi = fabs(p_sorted[j]._phi-p_sorted[i]._phi);
+ if (dphi>M_PI) dphi = twopi-dphi;
+ if (dphi<EPSILON_COLLINEAR){
+ // i is collinear with j; add the momentum (i) to the momentum (j)
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "# collinear merging at point " << p_sorted[i]._theta << ", " << p_sorted[j]._phi << endl;
+#endif
+ p_sorted[j] += p_sorted[i];
+ //p_sorted[j].build_thetaphi();
+ p_sorted[j].build_norm();
+ // set collinearity test to true
+ collinear = true;
+ }
+ j++;
+ }
+ // if no collinearity detected, add the particle to our list
+ if (!collinear)
+ p_uncol_hard.push_back(p_sorted[i]);
+ i++;
+ }
+
+ return 0;
+}
+
+
+// add a list of protocones
+// - protocones list of protocones (initial jet candidates)
+// - R2 cone radius (squared)
+// - Emin minimal energy allowed for jets
+//-------------------------------------------------------------
+int CSphsplit_merge::add_protocones(vector<CSphmomentum> *protocones, double R2, double Emin){
+ int i;
+ CSphmomentum *c;
+ CSphmomentum *v;
+ double tan2R;
+ CSphjet jet;
+
+ if (protocones->size()==0)
+ return 1;
+
+ E_min = Emin;
+ double R = sqrt(R2);
+ tan2R = tan(R);
+ tan2R *= tan2R;
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "particle list: ";
+ for (int i2=0;i2<n_left;i2++)
+ cout << p_remain[i2].parent_index << " "
+ << p_remain[i2].px << " " << p_remain[i2].py << " "
+ << p_remain[i2].pz << " " << p_remain[i2].E << endl;
+ cout << endl;
+#endif
+
+ // browse protocones
+ // for each of them, build the list of particles in them
+ for (vector<CSphmomentum>::iterator p_it = protocones->begin();p_it != protocones->end();p_it++){
+ // initialise variables
+ c = &(*p_it);
+
+ // browse particles to create cone contents
+ // note that jet is always initialised with default values at this level
+ jet.v = CSphmomentum();
+ jet.contents.clear();
+ for (i=0;i<n_left;i++){
+ v = &(p_remain[i]);
+ if (is_closer(v, c, tan2R)){
+ jet.contents.push_back(v->parent_index);
+ jet.v+= *v;
+ v->index=0;
+ }
+ }
+ jet.n=jet.contents.size();
+
+ // compute Etilde for that jet.
+ // we can't do that before as it requires knowledge of the jet axis
+ // which has just been computed.
+ compute_Etilde(jet);
+
+ // set the momentum in protocones
+ // (it was only known through its spatial coordinates up to now)
+ *c = jet.v;
+ c->build_thetaphi();
+
+ // set the jet range
+ jet.range=CSphtheta_phi_range(c->_theta,c->_phi,R);
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "adding protojet: ";
+
+ unsigned int phirange=jet.range.phi_range;
+ for (unsigned int i2=0;i2<32;i2++) fprintf(stdout, "%d", (phirange&(1<<i2)) >> i2 );
+ fprintf(stdout, "\t");
+ unsigned int thetarange=jet.range.theta_range;
+ for (unsigned int i2=0;i2<32;i2++) fprintf(stdout, "%d", (thetarange&(1<<i2)) >> i2);
+ fprintf(stdout, "\t");
+
+ for (int i2=0;i2<jet.n;i2++)
+ cout << jet.contents[i2] << " ";
+ cout << endl;
+#endif
+
+ // add it to the list of jets
+ insert(jet);
+ }
+
+ // update list of included particles
+ n_pass++;
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "remaining particles: ";
+#endif
+ int j=0;
+ for (i=0;i<n_left;i++){
+ if (p_remain[i].index){
+ // copy particle
+ p_remain[j]=p_remain[i];
+ p_remain[j].parent_index = p_remain[i].parent_index;
+ p_remain[j].index=1;
+ // set run in initial list
+ particles[p_remain[j].parent_index].index = n_pass;
+#ifdef DEBUG_SPLIT_MERGE
+ cout << p_remain[j].parent_index << " ";
+#endif
+ j++;
+ }
+ }
+#ifdef DEBUG_SPLIT_MERGE
+ cout << endl;
+#endif
+ n_left = j;
+ p_remain.resize(j);
+
+ merge_collinear_and_remove_soft();
+
+ return 0;
+}
+
+/*
+ * remove the hardest protocone and declare it a a jet
+ * - protocones list of protocones (initial jet candidates)
+ * - R2 cone radius (squared)
+// - Emin minimal energy allowed for jets
+ * return 0 on success, 1 on error
+ *
+ * The list of remaining particles (and the uncollinear-hard ones)
+ * is updated.
+ */
+int CSphsplit_merge::add_hardest_protocone_to_jets(std::vector<CSphmomentum> *protocones, double R2, double Emin){
+
+ int i;
+ CSphmomentum *c;
+ CSphmomentum *v;
+ double R, tan2R;
+ CSphjet jet, jet_candidate;
+ bool found_jet = false;
+
+ if (protocones->size()==0)
+ return 1;
+
+ E_min = Emin;
+ R = sqrt(R2);
+ tan2R = tan(R);
+ tan2R *= tan2R;
+
+ // browse protocones
+ // for each of them, build the list of particles in them
+ for (vector<CSphmomentum>::iterator p_it = protocones->begin();p_it != protocones->end();p_it++){
+ // initialise variables
+ c = &(*p_it);
+
+ // browse particles to create cone contents
+ // note that jet is always initialised with default values at this level
+ jet_candidate.v = CSphmomentum();
+ jet_candidate.contents.clear();
+ for (i=0;i<n_left;i++){
+ v = &(p_remain[i]);
+ if (is_closer(v, c, tan2R)){
+ jet_candidate.contents.push_back(v->parent_index);
+ jet_candidate.v+= *v;
+ v->index=0;
+ }
+ }
+ jet_candidate.n=jet_candidate.contents.size();
+
+ // compute Etilde for that jet.
+ // we can't do that before as it requires knowledge of the jet axis
+ // which has just been computed.
+ compute_Etilde(jet_candidate);
+
+ // set the momentum in protocones
+ // (it was only known through its spatial coordinates up to now)
+ *c = jet_candidate.v;
+ c->build_thetaphi();
+
+ // set the jet range
+ jet_candidate.range=CSphtheta_phi_range(c->_theta,c->_phi,R);
+
+ // check that the protojet has large enough pt
+ if (jet_candidate.v.E<E_min)
+ continue;
+
+ // assign the split-merge (or progressive-removal) squared scale variable
+ if (_user_scale) {
+ // sm_var2 is the signed square of the user scale returned
+ // for the jet candidate
+ jet_candidate.sm_var2 = (*_user_scale)(jet_candidate);
+ jet_candidate.sm_var2 *= abs(jet_candidate.sm_var2);
+ } else {
+ jet_candidate.sm_var2 = get_sm_var2(jet_candidate.v, jet_candidate.E_tilde);
+ }
+
+ // now check if it is possibly the hardest
+ if ((! found_jet) ||
+ (_user_scale ? _user_scale->is_larger(jet_candidate, jet)
+ : ptcomparison(jet_candidate, jet))){
+ jet = jet_candidate;
+ found_jet = true;
+ }
+ }
+
+ // make sure at least one of the jets has passed the selection
+ if (!found_jet) return 1;
+
+ // add the jet to the list of jets
+ jets.push_back(jet);
+ jets[jets.size()-1].v.build_thetaphi();
+ jets[jets.size()-1].v.build_norm();
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "PR-Jet " << jets.size() << " [size " << jet.contents.size() << "]:";
+#endif
+
+ // update the list of what particles are left
+ int p_remain_index = 0;
+ int contents_index = 0;
+ //sort(next_jet.contents.begin(),next_jet.contents.end());
+ for (int index=0;index<n_left;index++){
+ if ((contents_index<(int) jet.contents.size()) &&
+ (p_remain[index].parent_index == jet.contents[contents_index])){
+ // this particle belongs to the newly found jet
+ // set pass in initial list
+ particles[p_remain[index].parent_index].index = n_pass;
+#ifdef DEBUG_SPLIT_MERGE
+ cout << " " << jet.contents[contents_index];
+#endif
+ contents_index++;
+ } else {
+ // this particle still has to be clustered
+ p_remain[p_remain_index] = p_remain[index];
+ p_remain[p_remain_index].parent_index = p_remain[index].parent_index;
+ p_remain[p_remain_index].index=1;
+ p_remain_index++;
+ }
+ }
+ p_remain.resize(n_left-jet.contents.size());
+ n_left = p_remain.size();
+ jets[jets.size()-1].pass = particles[jet.contents[0]].index;
+
+ // update list of included particles
+ n_pass++;
+
+#ifdef DEBUG_SPLIT_MERGE
+ cout << endl;
+#endif
+
+ // male sure the list of uncol_hard particles (used for the next
+ // stable cone finding) is updated [could probably be more
+ // efficient]
+ merge_collinear_and_remove_soft();
+
+ return 0;
+}
+
+/*
+ * really do the splitting and merging
+ * At the end, the vector jets is filled with the jets found.
+ * the 'contents' field of each jets contains the indices
+ * of the particles included in that jet.
+ * - overlap_tshold threshold for splitting/merging transition
+ * - Emin minimal energy allowed for jets
+ * return the number of jets is returned
+ ******************************************************************/
+int CSphsplit_merge::perform(double overlap_tshold, double Emin){
+ // iterators for the 2 jets
+ cjet_iterator j1;
+ cjet_iterator j2;
+
+ E_min = Emin;
+
+ if (candidates->size()==0)
+ return 0;
+
+ if (overlap_tshold>=1.0 || overlap_tshold <= 0) {
+ ostringstream message;
+ message << "Illegal value for overlap_tshold, f = " << overlap_tshold;
+ message << " (legal values are 0<f<1)";
+ throw siscone::Csiscone_error(message.str());
+ }
+
+ // overlap (the contents of this variable depends on the choice for
+ // the split--merge variable.)
+ // Note that the square of the ovelap is used
+ double overlap2;
+
+ // avoid to compute tshold*tshold at each overlap
+ double overlap_tshold2 = overlap_tshold*overlap_tshold;
+
+ do{
+ if (candidates->size()>0){
+ // browse for the first jet
+ j1 = candidates->begin();
+
+ // if hardest jet does not pass threshold then nothing else will
+ // either so one stops the split merge.
+ //if (j1->sm_var2<SM_var2_hardest_cut_off) {break;}
+ if (j1->sm_var2<SM_var2_hardest_cut_off) {break;}
+
+ // browse for the second jet
+ j2 = j1;
+ j2++;
+ int j2_relindex = 1; // used only in ifdef, but costs little so keep it outside
+
+ while (j2 != candidates->end()){
+#ifdef DEBUG_SPLIT_MERGE
+ if (j2_relindex==1) show();
+ cout << "check overlap between cdt 1 and cdt " << j2_relindex+1 << " with overlap " << endl;
+#endif
+ // check overlapping
+ if (get_overlap(*j1, *j2, &overlap2)){
+ // check if overlapping energy passes threshold
+ // Note that this depends on the ordering variable
+#ifdef DEBUG_SPLIT_MERGE
+ cout << "overlap between cdt 1 and cdt " << j2_relindex+1 << " with overlap "
+ << sqrt(overlap2)/j2->v.E << endl<<endl;
+#endif
+ // We use the energy for the overlap computation
+ if (overlap2<overlap_tshold2*sqr(j2->v.E)){
+#ifdef DEBUG_SPLIT_MERGE
+ cout << " --> split" << endl<<endl;
+#endif
+ // split jets
+ split(j1, j2);
+
+ // update iterators
+ j2 = j1 = candidates->begin();
+ j2_relindex = 0;
+ } else {
+#ifdef DEBUG_SPLIT_MERGE
+ cout << " --> merge" << endl<<endl;
+#endif
+ // merge jets
+ merge(j1, j2);
+
+ // update iterators
+ j2 = j1 = candidates->begin();
+ j2_relindex = 0;
+ }
+ }
+ // watch out: split/merge might have caused new jets with E <
+ // Emin to disappear, so the total number of jets may
+ // have changed by more than expected and j2 might already by
+ // the end of the candidates list...
+ j2_relindex++;
+ if (j2 != candidates->end()) j2++;
+ } // end of loop on the second jet
+
+ if (j1 != candidates->end()) {
+ // all "second jet" passed without overlapping
+ // (otherwise we won't leave the j2 loop)
+ // => store jet 1 as real jet
+ jets.push_back(*j1);
+ jets[jets.size()-1].v.build_thetaphi();
+ jets[jets.size()-1].v.build_norm();
+ // a bug where the contents has non-zero size has been cropping
+ // up in many contexts -- so catch it!
+ assert(j1->contents.size() > 0);
+ jets[jets.size()-1].pass = particles[j1->contents[0]].index;
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ cand_refs.erase(j1->v.ref);
+#endif
+ candidates->erase(j1);
+ }
+ }
+ } while (candidates->size()>0);
+
+ // sort jets by Energy
+ sort(jets.begin(), jets.end(), jets_E_less);
+#ifdef DEBUG_SPLIT_MERGE
+ show();
+#endif
+
+ return jets.size();
+}
+
+
+
+// save the event on disk
+// - flux stream used to save jet contents
+//--------------------------------------------
+int CSphsplit_merge::save_contents(FILE *flux){
+ jet_iterator it_j;
+ CSphjet *j1;
+ int i1, i2;
+
+ fprintf(flux, "# %d jets found\n", (int) jets.size());
+ fprintf(flux, "# columns are: px, py, pz, E and number of particles for each jet\n");
+ for (it_j = jets.begin(), i1=0 ; it_j != jets.end() ; it_j++, i1++){
+ j1 = &(*it_j);
+ fprintf(flux, "%e\t%e\t%e\t%e\t%d\n",
+ j1->v.px, j1->v.py, j1->v.pz, j1->v.E, j1->n);
+ }
+
+ fprintf(flux, "# jet contents\n");
+ fprintf(flux, "# columns are: px, py, pz, E, particle index and jet number\n");
+ for (it_j = jets.begin(), i1=0 ; it_j != jets.end() ; it_j++, i1++){
+ j1 = &(*it_j);
+ for (i2=0;i2<j1->n;i2++)
+ fprintf(flux, "%e\t%e\t%e\t%e\t%d\t%d\n",
+ particles[j1->contents[i2]].px, particles[j1->contents[i2]].py,
+ particles[j1->contents[i2]].pz, particles[j1->contents[i2]].E,
+ j1->contents[i2], i1);
+ }
+
+ return 0;
+}
+
+
+// show current jets/candidate status
+//------------------------------------
+int CSphsplit_merge::show(){
+ jet_iterator it_j;
+ cjet_iterator it_c;
+ CSphjet *j;
+ const CSphjet *c;
+ int i1, i2;
+
+ for (it_j = jets.begin(), i1=0 ; it_j != jets.end() ; it_j++, i1++){
+ j = &(*it_j);
+ fprintf(stdout, "jet %2d: %e\t%e\t%e\t%e\t", i1+1,
+ j->v.px, j->v.py, j->v.pz, j->v.E);
+
+ unsigned int phirange=j->range.phi_range;
+ for (i2=0;i2<32;i2++) fprintf(stdout, "%d", (phirange&(1<<i2)) >> i2 );
+ fprintf(stdout, "\t");
+ unsigned int thetarange=j->range.theta_range;
+ for (i2=0;i2<32;i2++) fprintf(stdout, "%d", (thetarange&(1<<i2)) >> i2);
+ fprintf(stdout, "\t");
+
+ for (i2=0;i2<j->n;i2++)
+ fprintf(stdout, "%d ", j->contents[i2]);
+ fprintf(stdout, "\n");
+ }
+
+ for (it_c = candidates->begin(), i1=0 ; it_c != candidates->end() ; it_c++, i1++){
+ c = &(*it_c);
+ fprintf(stdout, "cdt %2d: %e\t%e\t%e\t%e\t%e\t", i1+1,
+ c->v.px, c->v.py, c->v.pz, c->v.E, sqrt(c->sm_var2));
+
+ unsigned int phirange=c->range.phi_range;
+ for (i2=0;i2<32;i2++) fprintf(stdout, "%d", (phirange&(1<<i2)) >> i2 );
+ fprintf(stdout, "\t");
+ unsigned int thetarange=c->range.theta_range;
+ for (i2=0;i2<32;i2++) fprintf(stdout, "%d", (thetarange&(1<<i2)) >> i2);
+ fprintf(stdout, "\t");
+
+ for (i2=0;i2<c->n;i2++)
+ fprintf(stdout, "%d ", c->contents[i2]);
+ fprintf(stdout, "\n");
+ }
+
+ fprintf(stdout, "\n");
+ return 0;
+}
+
+
+// get the overlap between 2 jets
+// - j1 first jet
+// - j2 second jet
+// - overlap2 returned overlap^2 (determined by the choice of SM variable)
+// return true if overlapping, false if disjoint
+//---------------------------------------------------------------------
+bool CSphsplit_merge::get_overlap(const CSphjet &j1, const CSphjet &j2, double *overlap2){
+ // check if ranges overlap
+ if (!is_range_overlap(j1.range,j2.range))
+ return false;
+
+ int i1,i2;
+ bool is_overlap;
+
+ // initialise
+ i1=i2=idx_size=0;
+ is_overlap = false;
+ CSphmomentum v;
+
+ // compute overlap
+ // at the same time, we store union in indices
+ do{
+ if (j1.contents[i1]<j2.contents[i2]){
+ indices[idx_size] = j1.contents[i1];
+ i1++;
+ } else if (j1.contents[i1]>j2.contents[i2]){
+ indices[idx_size] = j2.contents[i2];
+ i2++;
+ } else { // (j1.contents[i1]==j2.contents[i2])
+ v += particles[j2.contents[i2]];
+ indices[idx_size] = j2.contents[i2];
+ i1++;
+ i2++;
+ is_overlap = true;
+ }
+ idx_size++;
+ } while ((i1<j1.n) && (i2<j2.n));
+
+ // finish computing union
+ // (only needed if overlap !)
+ if (is_overlap){
+ while (i1<j1.n){
+ indices[idx_size] = j1.contents[i1];
+ i1++;
+ idx_size++;
+ }
+ while (i2<j2.n){
+ indices[idx_size] = j2.contents[i2];
+ i2++;
+ idx_size++;
+ }
+ }
+
+ // assign the overlapping var as return variable
+ (*overlap2) = sqr(v.E); //get_sm_var2(v, E_tilde);
+
+ return is_overlap;
+}
+
+
+
+// split the two given jet.
+// during this procedure, the jets j1 & j2 are replaced
+// by 2 new jets. Common particles are associted to the
+// closest initial jet.
+// - it_j1 iterator of the first jet in 'candidates'
+// - it_j2 iterator of the second jet in 'candidates'
+// - j1 first jet (CSphjet instance)
+// - j2 second jet (CSphjet instance)
+// return true on success, false on error
+////////////////////////////////////////////////////////////////
+bool CSphsplit_merge::split(cjet_iterator &it_j1, cjet_iterator &it_j2){
+ int i1, i2;
+ CSphjet jet1, jet2;
+ double E1_weight, E2_weight;
+ CSphmomentum tmp;
+ CSphmomentum *v;
+
+ // shorthand to avoid having "->" all over the place
+ const CSphjet & j1 = * it_j1;
+ const CSphjet & j2 = * it_j2;
+
+ i1=i2=0;
+ jet2.v = jet1.v = CSphmomentum();
+
+ // compute centroids
+ // When use_E_weighted_splitting is activated, the
+ // "geometrical" distance is weighted by the inverse
+ // of the E of the protojet
+ // This is stored in E{1,2}_weight
+ E1_weight = (use_E_weighted_splitting) ? 1.0/j1.v.E/j1.v.E : 1.0;
+ E2_weight = (use_E_weighted_splitting) ? 1.0/j2.v.E/j2.v.E : 1.0;
+
+ // compute jet splitting
+ do{
+ if (j1.contents[i1]<j2.contents[i2]){
+ // particle i1 belong only to jet 1
+ v = &(particles[j1.contents[i1]]);
+ jet1.contents.push_back(j1.contents[i1]);
+ jet1.v += *v;
+ //jet1.pt_tilde += pt[j1.contents[i1]];
+ i1++;
+ jet1.range.add_particle(v->_theta,v->_phi);
+ } else if (j1.contents[i1]>j2.contents[i2]){
+ // particle i2 belong only to jet 2
+ v = &(particles[j2.contents[i2]]);
+ jet2.contents.push_back(j2.contents[i2]);
+ jet2.v += *v;
+ //jet2.pt_tilde += pt[j2.contents[i2]];
+ i2++;
+ jet2.range.add_particle(v->_theta,v->_phi);
+ } else { // (j1.contents[i1]==j2.contents[i2])
+ // common particle, decide which is the closest centre
+ v = &(particles[j1.contents[i1]]);
+
+ //TODO: improve this brutal use of atan2 and sqrt !!!!
+
+ //? what when == ?
+ // When use_E_weighted_splitting is activated, the
+ // "geometrical" distance is weighted by the inverse
+ // of the E of the protojet
+ double d1 = get_distance(&(j1.v), v)*E1_weight;
+ double d2 = get_distance(&(j2.v), v)*E2_weight;
+ // do bookkeeping on most ambiguous split
+ if (fabs(d1-d2) < most_ambiguous_split)
+ most_ambiguous_split = fabs(d1-d2);
+
+ if (d1<d2){
+ // particle i1 belong only to jet 1
+ jet1.contents.push_back(j1.contents[i1]);
+ jet1.v += *v;
+ //jet1.pt_tilde += pt[j1.contents[i1]];
+ jet1.range.add_particle(v->_theta,v->_phi);
+ } else {
+ // particle i2 belong only to jet 2
+ jet2.contents.push_back(j2.contents[i2]);
+ jet2.v += *v;
+ //jet2.pt_tilde += pt[j2.contents[i2]];
+ jet2.range.add_particle(v->_theta,v->_phi);
+ }
+
+ i1++;
+ i2++;
+ }
+ } while ((i1<j1.n) && (i2<j2.n));
+
+ while (i1<j1.n){
+ v = &(particles[j1.contents[i1]]);
+ jet1.contents.push_back(j1.contents[i1]);
+ jet1.v += *v;
+ //jet1.pt_tilde += pt[j1.contents[i1]];
+ i1++;
+ jet1.range.add_particle(v->_theta,v->_phi);
+ }
+ while (i2<j2.n){
+ v = &(particles[j2.contents[i2]]);
+ jet2.contents.push_back(j2.contents[i2]);
+ jet2.v += *v;
+ //jet2.pt_tilde += pt[j2.contents[i2]];
+ i2++;
+ jet2.range.add_particle(v->_theta,v->_phi);
+ }
+
+ // finalise jets
+ jet1.n = jet1.contents.size();
+ jet2.n = jet2.contents.size();
+
+ // now the jet axis is known, we can compute Etilde
+ compute_Etilde(jet1);
+ compute_Etilde(jet2);
+
+ // remove previous jets
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ cand_refs.erase(j1.v.ref);
+ cand_refs.erase(j2.v.ref);
+#endif
+ candidates->erase(it_j1);
+ candidates->erase(it_j2);
+
+ // reinsert new ones
+ insert(jet1);
+ insert(jet2);
+
+ return true;
+}
+
+// merge the two given jet.
+// during this procedure, the jets j1 & j2 are replaced
+// by 1 single jets containing both of them.
+// - it_j1 iterator of the first jet in 'candidates'
+// - it_j2 iterator of the second jet in 'candidates'
+// return true on success, false on error
+////////////////////////////////////////////////////////////////
+bool CSphsplit_merge::merge(cjet_iterator &it_j1, cjet_iterator &it_j2){
+ CSphjet jet;
+ int i;
+
+ // build new jet
+ // note: particles within j1 & j2 have already been stored in indices
+ for (i=0;i<idx_size;i++){
+ jet.contents.push_back(indices[i]);
+ jet.v += particles[indices[i]];
+ //jet.pt_tilde += pt[indices[i]];
+ }
+ jet.n = jet.contents.size();
+
+ compute_Etilde(jet);
+
+ // deal with ranges
+ jet.range = range_union(it_j1->range, it_j2->range);
+
+ // remove old candidates
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ if (merge_identical_protocones){
+ cand_refs.erase(it_j1->v.ref);
+ cand_refs.erase(it_j2->v.ref);
+ }
+#endif
+ candidates->erase(it_j1);
+ candidates->erase(it_j2);
+
+ // reinsert new candidate
+ insert(jet);
+
+ return true;
+}
+
+/**
+ * Check whether or not a jet has to be inserted in the
+ * list of protojets. If it has, set its sm_variable and
+ * insert it to the list of protojets.
+ */
+bool CSphsplit_merge::insert(CSphjet &jet){
+
+ // eventually check that no other candidate are present with the
+ // same cone contents. We recall that this automatic merging of
+ // identical protocones can lead to infrared-unsafe situations.
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ if ((merge_identical_protocones) && (!cand_refs.insert(jet.v.ref).second))
+ return false;
+#endif
+
+ // check that the protojet has large enough energy
+ if (jet.v.E<E_min)
+ return false;
+
+ // assign SM variable
+ jet.sm_var2 = get_sm_var2(jet.v, jet.E_tilde);
+
+ // insert the jet.
+ candidates->insert(jet);
+
+ return true;
+}
+
+/**
+ * given a 4-momentum and its associated pT, return the
+ * variable that has to be used for SM
+ * \param v 4 momentum of the protojet
+ * \param pt_tilde pt_tilde of the protojet
+ */
+double CSphsplit_merge::get_sm_var2(CSphmomentum &v, double &E_tilde){
+ switch(ptcomparison.split_merge_scale) {
+ case SM_E: return v.E*v.E;
+ case SM_Etilde: return E_tilde*E_tilde;
+ default:
+ throw siscone::Csiscone_error("Unsupported split-merge scale choice: "
+ + ptcomparison.SM_scale_name());
+ }
+
+ //return 0.0;
+}
+
+
+
+/// compute Etilde for a given jet
+void CSphsplit_merge::compute_Etilde(CSphjet &jet){
+ jet.v.build_norm();
+ jet.E_tilde=0.0;
+ CSph3vector jet_axis = jet.v;
+ //if (jet.v._norm==0){
+ // jet_axis = CSph3vector(0.0,0.0,0.0);
+ //} else {
+ jet_axis/=jet.v.E;
+ //}
+ //cout << "~~~ Axis: " << jet.v.px << " " << jet.v.py << " " << jet.v.pz << " " << jet.v._norm << endl;
+ //cout << "~~~ Axis: " << jet_axis.px << " " << jet_axis.py << " " << jet_axis.pz << endl;
+ for (vector<int>::iterator cont_it=jet.contents.begin(); cont_it!=jet.contents.end(); cont_it++){
+ const CSphmomentum &p = particles[*cont_it];
+ jet.E_tilde+=p.E*(1.0+norm2_cross_product3(p,jet_axis)/particles_norm2[*cont_it]);
+ }
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/spherical/split_merge.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/geom_2d.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/geom_2d.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/geom_2d.cpp (revision 420)
@@ -0,0 +1,178 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: geom_2d.cpp //
+// Description: source file for two-dimensional geometry tools //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "geom_2d.h"
+#include <algorithm>
+
+namespace siscone_spherical{
+
+#define PHI_RANGE_MASK 0xFFFFFFFF
+
+/*********************************************************
+ * class CSphtheta_phi_range implementation *
+ * class for holding a covering range in eta-phi *
+ * *
+ * This class deals with ranges in the eta-phi plane. It *
+ * implements methods to test if two ranges overlap and *
+ * to take the union of two overlapping intervals. *
+ *********************************************************/
+
+using namespace std;
+
+// static member default init
+//----------------------------
+double CSphtheta_phi_range::theta_min = 0.0;
+double CSphtheta_phi_range::theta_max = M_PI;
+
+// default ctor
+//--------------
+CSphtheta_phi_range::CSphtheta_phi_range(){
+ theta_range = 0;
+ phi_range = 0;
+}
+
+// ctor with initialisation
+// we initialise with a centre (in eta,phi) and a radius
+// - c_theta theta coordinate of the centre
+// - c_phi phi coordinate of the centre
+// - R radius
+//-------------------------------------------------------
+CSphtheta_phi_range::CSphtheta_phi_range(double c_theta, double c_phi, double R){
+ // determination of the eta range
+ //-------------------------------
+ double xmin = max(c_theta-R,theta_min+0.00001);
+ double xmax = min(c_theta+R,theta_max-0.00001);
+
+ unsigned int cell_min = get_theta_cell(xmin);
+ unsigned int cell_max = get_theta_cell(xmax);
+
+ // warning: if cell_max==2^31, 2*cell_max==0 hence,
+ // even if the next formula is formally (2*cell_max-cell_min),
+ // expressing it as (cell_max-cell_min)+cell_max is safe.
+ theta_range = (cell_max-cell_min)+cell_max;
+
+ // determination of the phi range
+ // !! taking care of periodicity !!
+ // !! and the theta dependence !!
+ //---------------------------------
+ double ymin,ymax;
+ double extra = asin(R/M_PI);
+ // if the theta range comes too close to the endpoints (theta=0 or
+ // theta=pi), then keep the full phi range
+ if (xmin<=theta_min+extra){
+ ymin = -M_PI+0.00001;
+ ymax = M_PI-0.00001;
+ } else if (xmax>=theta_max-extra){
+ ymin = -M_PI+0.00001;
+ ymax = M_PI-0.00001;
+ } else {
+ extra = max(1.0/sin(xmin), 1.0/sin(xmax));
+ ymin = (c_phi-R)*extra;
+ while (ymin<-M_PI) ymin+=twopi;
+ while (ymin> M_PI) ymin-=twopi;
+ ymax = (c_phi-R)*extra;
+ while (ymax<-M_PI) ymax+=twopi;
+ while (ymax> M_PI) ymax-=twopi;
+ }
+ cell_min = get_phi_cell(ymin);
+ cell_max = get_phi_cell(ymax);
+
+ // Also, if the interval goes through pi, inversion is needed
+ if (ymax>ymin)
+ phi_range = (cell_max-cell_min)+cell_max;
+ else {
+ phi_range = (cell_min==cell_max)
+ ? PHI_RANGE_MASK
+ : ((PHI_RANGE_MASK^(cell_min-cell_max)) + cell_max);
+ }
+}
+
+// assignment of range
+// - r range to assign to current one
+//---------------------------------------
+CSphtheta_phi_range& CSphtheta_phi_range::operator = (const CSphtheta_phi_range &r){
+ theta_range = r.theta_range;
+ phi_range = r.phi_range;
+
+ return *this;
+}
+
+// add a particle to the range
+// - eta eta coordinate of the particle
+// - phi phi coordinate of the particle
+// \return 0 on success, 1 on error
+//----------------------------------------
+int CSphtheta_phi_range::add_particle(const double theta, const double phi){
+ // get the theta cell
+ unsigned int theta_cell = get_theta_cell(theta);
+
+ // deal with the eta coordinate
+ theta_range |= theta_cell;
+
+ // deal with the phi coordinate
+ //
+ // watch out: if the theta_cell includes theta==0 or theta==pi,
+ // incude the full phi range
+ if ((theta_cell == 0x1) || (theta_cell == 0x80000000))
+ phi_range = 0xffffffff;
+ else
+ phi_range |= get_phi_cell(phi);
+
+ return 0;
+}
+
+
+// test overlap
+// - r1 first range
+// - r2 second range
+// return true if overlap, false otherwise.
+//------------------------------------------
+bool is_range_overlap(const CSphtheta_phi_range &r1, const CSphtheta_phi_range &r2){
+ // check overlap in eta AND phi
+ return ((r1.theta_range & r2.theta_range) && (r1.phi_range & r2.phi_range));
+}
+
+// compute union
+// Note: we assume that the two intervals overlap
+// - r1 first range
+// - r2 second range
+// \return union of the two ranges
+//------------------------------------------
+const CSphtheta_phi_range range_union (const CSphtheta_phi_range &r1, const CSphtheta_phi_range &r2){
+ CSphtheta_phi_range tmp;
+
+ // compute union in eta
+ tmp.theta_range = r1.theta_range | r2.theta_range;
+
+ // compute union in phi
+ tmp.phi_range = r1.phi_range | r2.phi_range;
+
+ return tmp;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/spherical/geom_2d.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Revision
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/README
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/README (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/README (revision 420)
@@ -0,0 +1 @@
+This directory hosts the sperical-coordinates version of SISCone
Index: tags/siscone-3.0.4/siscone/spherical/split_merge.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/split_merge.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/split_merge.h (revision 420)
@@ -0,0 +1,477 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: split_merge.h //
+// Description: header file for splitting/merging (contains the CJet class) //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_SPLIT_MERGE_H__
+#define __SPH_SPLIT_MERGE_H__
+
+#include <siscone/defines.h>
+#include <siscone/config.h>
+#include "geom_2d.h"
+#include "momentum.h"
+#include <stdio.h>
+#include <vector>
+#include <set>
+#include <memory>
+#include <string>
+
+namespace siscone_spherical{
+
+const int CJET_INEXISTENT_PASS = -2;
+
+/**
+ * \class CSphjet
+ * real Jet information.
+ *
+ * This class contains information for one single jet.
+ * That is, first, its momentum carrying information
+ * about its centre and pT, and second, its particle
+ * contents
+ */
+class CSphjet{
+ public:
+ /// default ctor
+ CSphjet();
+
+ /// default dtor
+ ~CSphjet();
+
+ CSphmomentum v; ///< jet momentum
+ double E_tilde; ///< sum of E_i [ 1 +|p_i x p_J|^2/(|p_i|^2 E_J^2)]
+ int n; ///< number of particles inside
+ std::vector<int> contents; ///< particle contents (list of indices)
+
+ /// ordering variable used for ordering and overlap in the
+ /// split--merge. This variable is automatically set either to
+ /// E_tilde or E depending on the siscone parameter.
+ ///
+ /// Note that the default behaviour is E_tilde and that other
+ /// choices may lead to infrared unsafe situations.
+ ///
+ /// Note: we use the square of the varible rather than the variable
+ /// itself
+ ///
+ /// Note 2: for the overlap computation, we shall use the jet energy!
+ double sm_var2;
+
+ /// covered range in eta-phi
+ CSphtheta_phi_range range;
+
+ /// pass at which the jet has been found
+ /// It starts at 0 (first pass), -1 means infinite rapidity
+ /// (it will be initialised to "CJET_INEXISTENT_PASS" which should
+ /// never appear after clustering)
+ int pass;
+};
+
+/// ordering of jets in pt
+///bool jets_pt_less(const CSphjet &j1, const CSphjet &j2);
+
+/// ordering of jets in energy (e.g. used in final jets ordering)
+bool jets_E_less(const CSphjet &j1, const CSphjet &j2);
+
+
+/// the choices of scale variable that can be used in the split-merge
+/// step, both for ordering the protojets and for measuing their
+/// overlap; E is defined in E-scheme (4-momentum) recombination;
+/// Etilde = \sum_{i\in jet} E_i [1+sin^2(theta_{i,jet})]
+///
+/// NB: if one changes the order here, one _MUST_ also change the order
+/// in the SISCone plugin
+enum Esplit_merge_scale {
+ SM_E, ///< Energy (IR unsafe with momentum conservation)
+ SM_Etilde ///< sum_{i \in jet} E_i [1+sin^2(theta_iJ)]
+};
+
+/// return the name of the split-merge scale choice
+std::string split_merge_scale_name(Esplit_merge_scale sms);
+
+/**
+ * \class CSphsplit_merge_ptcomparison
+ * a class that allows us to carry out comparisons of pt of jets, using
+ * information from exact particle contents where necessary.
+ */
+class CSphsplit_merge_ptcomparison{
+public:
+ /// default ctor
+ CSphsplit_merge_ptcomparison() :
+ particles(0), split_merge_scale(SM_Etilde){};
+
+ /// return the name corresponding to the SM scale variable
+ std::string SM_scale_name() const {
+ return split_merge_scale_name(split_merge_scale);}
+
+ std::vector<CSphmomentum> * particles; ///< pointer to the list of particles
+ std::vector<double> * particles_norm2; ///< pointer to the particles's norm^2
+
+ /// comparison of 2 CSphjet
+ bool operator()(const CSphjet &jet1, const CSphjet &jet2) const;
+
+ /**
+ * get the difference between 2 jets, calculated such that rounding
+ * errors will not affect the result even if the two jets have
+ * almost the same content (so that the difference is below the
+ * rounding errors)
+ *
+ * \param j1 first jet
+ * \param j2 second jet
+ * \param v jet1-jet2
+ * \param E_tilde jet1-jet2 E_tilde
+ */
+ void get_difference(const CSphjet &j1, const CSphjet &j2, CSphmomentum *v, double *E_tilde) const;
+
+ /// the following parameter controls the variable we're using for
+ /// the split-merge process i.e. the variable we use for
+ /// 1. ordering jet candidates;
+ /// 2. computing the overlap fraction of two candidates.
+ /// The default value uses Etilde. The other alternative is E
+ /// NOTE: Modifying the default choice can have nasty effects:
+ /// - using E is IR-safe for QCD jets but the IR unsafety remains
+ /// for back-to-back jets of unstable narrow-width particles
+ /// (e.g. Higgs).
+ /// Therefore, keeping the default value is strongly advised.
+ Esplit_merge_scale split_merge_scale;
+};
+
+
+// iterator types
+/// iterator definition for the jet candidates structure
+typedef std::multiset<siscone_spherical::CSphjet,CSphsplit_merge_ptcomparison>::iterator cjet_iterator;
+
+/// iterator definition for the jet structure
+typedef std::vector<siscone_spherical::CSphjet>::iterator jet_iterator;
+
+
+
+/**
+ * \class CSphsplit_merge
+ * Class used to split and merge jets.
+ */
+class CSphsplit_merge{
+ public:
+ /// default ctor
+ CSphsplit_merge();
+
+ /// default dtor
+ ~CSphsplit_merge();
+
+
+ //////////////////////////////
+ // initialisation functions //
+ //////////////////////////////
+
+ /**
+ * initialisation function
+ * \param _particles list of particles
+ * \param protocones list of protocones (initial jet candidates)
+ * \param R2 cone radius (squared)
+ * \param Emin minimal energy allowed for jets
+ * \return 0 on success, 1 on error
+ */
+ int init(std::vector<CSphmomentum> &_particles, std::vector<CSphmomentum> *protocones, double R2, double Emin=0.0);
+
+ /**
+ * initialisation function for particle list
+ * \param _particles list of particles
+ * \return 0 on success, 1 on error
+ */
+ int init_particles(std::vector<CSphmomentum> &_particles);
+
+ /**
+ * build initial list of left particles
+ */
+ int init_pleft();
+
+ /**
+ * use an energy-dependent boundary for splitting
+ * When called with true, the criterium for splitting two protojets
+ * will be to compare D1^2/kt1^2 vs. D2^2/kt2^2, the (anti-)kt-weighted
+ * distance instead of the plain distance D1^2 vs. D2^2.
+ * This can be set in order to produce more circular hard jets,
+ * with the same underlying philosophy as for the anti-kt algorithm.
+ * We thus expect a behaviour closer to the IterativeCone one.
+ * By default, we use the standard D1^2 vs. D2^2 comparison and this
+ * function is not called.
+ */
+ inline int set_E_weighted_splitting(bool _use_E_weighted_splitting){
+ use_E_weighted_splitting = _use_E_weighted_splitting;
+ return 0;
+ }
+
+ ////////////////////////
+ // cleaning functions //
+ ////////////////////////
+
+ /// partial clearance
+ int partial_clear();
+
+ /// full clearance
+ int full_clear();
+
+ ///////////////////////////////////////
+ // user-defined stable-cone ordering //
+ ///////////////////////////////////////
+
+ /// \class Cuser_scale_base
+ /// base class for user-defined ordering of stable cones
+ ///
+ /// derived classes have to implement the () operator that returns
+ /// the scale associated with a given jet.
+ class Cuser_scale_base{
+ public:
+ /// empty virtual dtor
+ virtual ~Cuser_scale_base(){}
+
+ /// the scale associated with a given jet
+ ///
+ /// "progressive removal" iteratively removes the stable cone with
+ /// the largest scale
+ virtual double operator()(const CSphjet & jet) const = 0;
+
+ /// returns true when the scale associated with jet a is larger than
+ /// the scale associated with jet b
+ ///
+ /// By default this does a simple direct comparison but it can be
+ /// overloaded for higher precision [recommended if possible]
+ ///
+ /// This function assumes that a.sm_var2 and b.sm_var2 have been
+ /// correctly initialised with the signed squared output of
+ /// operator(), as is by default the case when is_larger is called
+ /// from within siscone.
+ virtual bool is_larger(const CSphjet & a, const CSphjet & b) const{
+ return (a.sm_var2 > b.sm_var2);
+ }
+ };
+
+ /// associate a user-defined scale to order the stable cones
+ ///
+ /// Note that this is only used in "progressive-removal mode",
+ /// e.g. in add_hardest_protocone_to_jets().
+ void set_user_scale(const Cuser_scale_base * user_scale_in){
+ _user_scale = user_scale_in;
+ }
+
+ /// return the user-defined scale (NULL if none)
+ const Cuser_scale_base * user_scale() const { return _user_scale; }
+
+
+ /////////////////////////////////
+ // main parts of the algorithm //
+ /////////////////////////////////
+
+ /**
+ * build the list 'p_uncol_hard' from p_remain by clustering
+ * collinear particles
+ * note that thins in only used for stable-cone detection
+ * so the parent_index field is unnecessary
+ *
+ * Note that soft particles are not removed here
+ * This is just a remnant from the trunk version
+ */
+ int merge_collinear_and_remove_soft();
+
+ /**
+ * add a list of protocones
+ * \param protocones list of protocones (initial jet candidates)
+ * \param R2 cone radius (squared)
+ * \param Emin minimal emergy allowed for jets
+ * \return 0 on success, 1 on error
+ */
+ int add_protocones(std::vector<CSphmomentum> *protocones, double R2, double Emin=0.0);
+
+ /**
+ * remove the hardest protocone and declare it a a jet
+ * \param protocones list of protocones (initial jet candidates)
+ * \param R2 cone radius (squared)
+ * \param Emin minimal emergy allowed for jets
+ * \return 0 on success, 1 on error
+ *
+ * The list of remaining particles (and the uncollinear-hard ones)
+ * is updated.
+ */
+ int add_hardest_protocone_to_jets(std::vector<CSphmomentum> *protocones, double R2, double Emin=0.0);
+
+ /**
+ * really do the splitting and merging
+ * At the end, the vector jets is filled with the jets found.
+ * the 'contents' field of each jets contains the indices
+ * of the particles included in that jet.
+ * \param overlap_tshold threshold for splitting/merging transition
+ * \param Emin minimal energy allowed for jets
+ * \return the number of jets is returned
+ */
+ int perform(double overlap_tshold, double Emin=0.0);
+
+
+ //////////////////////////////
+ // save and debug functions //
+ //////////////////////////////
+
+ /// save final jets
+ /// \param flux stream to save the jet contentss
+ int save_contents(FILE *flux);
+
+ /// show jets/candidates status
+ int show();
+
+ // particle information
+ int n; ///< number of particles
+ std::vector<CSphmomentum> particles; ///< list of particles
+ std::vector<double> particles_norm2; ///< norm^2 of the particle (3-vect part)
+ int n_left; ///< numer of particles that does not belong to any jet
+ std::vector<CSphmomentum> p_remain; ///< list of particles remaining to deal with
+ std::vector<CSphmomentum> p_uncol_hard; ///< list of particles remaining with collinear clustering
+ int n_pass; ///< index of the run
+
+ /// minimal difference in squared distance between a particle and
+ /// two overlapping protojets when doing a split (useful when
+ /// testing approx. collinear safety)
+ double most_ambiguous_split;
+
+ // jets information
+ std::vector<CSphjet> jets; ///< list of jets
+
+ // working entries
+ int *indices; ///< maximal size array for indices works
+ int idx_size; ///< number of elements in indices1
+
+ /// The following flag indicates that identical protocones
+ /// are to be merged automatically each time around the split-merge
+ /// loop and before anything else happens.
+ ///
+ /// This flag is only effective if ALLOW_MERGE_IDENTICAL_PROTOCONES
+ /// is set in 'defines.h'
+ /// Note that this lead to infrared-unsafety so it is disabled
+ /// by default
+ bool merge_identical_protocones;
+
+ /// member used for detailed comparisons of pt's
+ CSphsplit_merge_ptcomparison ptcomparison;
+
+ /// stop split--merge or progressive-removal when the squared SM_var
+ /// of the hardest protojet is below this cut-off. Note that this is
+ /// a signed square (ie SM_var*|SM_var|) to be able to handle
+ /// negative values.
+ ///
+ /// Note that the cut-off is set on the variable squared.
+ double SM_var2_hardest_cut_off;
+
+ /// Energy cutoff for the particles to put in p_uncol_hard
+ /// this is meant to allow removing soft particles in the
+ /// stable-cone search.
+ ///
+ /// This is not collinear-safe so you should not use this
+ /// variable unless you really know what you are doing
+ /// Note that the cut-off is set on the variable squared.
+ double stable_cone_soft_E2_cutoff;
+
+ private:
+ /**
+ * get the overlap between 2 jets
+ * \param j1 first jet
+ * \param j2 second jet
+ * \param v returned overlap^2 (determined by the choice of SM variable)
+ * \return true if overlapping, false if disjoint
+ */
+ bool get_overlap(const CSphjet &j1, const CSphjet &j2, double *v);
+
+
+ /**
+ * split the two given jets.
+ * during this procedure, the jets j1 & j2 are replaced
+ * by 2 new jets. Common particles are associted to the
+ * closest initial jet.
+ * \param it_j1 iterator of the first jet in 'candidates'
+ * \param it_j2 iterator of the second jet in 'candidates'
+ * \param j1 first jet (CSphjet instance)
+ * \param j2 second jet (CSphjet instance)
+ * \return true on success, false on error
+ */
+ bool split(cjet_iterator &it_j1, cjet_iterator &it_j2);
+
+ /**
+ * merge the two given jet.
+ * during this procedure, the jets j1 & j2 are replaced
+ * by 1 single jets containing both of them.
+ * \param it_j1 iterator of the first jet in 'candidates'
+ * \param it_j2 iterator of the second jet in 'candidates'
+ * \return true on success, false on error
+ */
+ bool merge(cjet_iterator &it_j1, cjet_iterator &it_j2);
+
+ /**
+ * Check whether or not a jet has to be inserted in the
+ * list of protojets. If it has, set its sm_variable and
+ * insert it to the list of protojets.
+ * \param jet jet to insert
+ */
+ bool insert(CSphjet &jet);
+
+ /**
+ * given a 4-momentum and its associated pT, return the
+ * variable tht has to be used for SM
+ * \param v 4 momentum of the protojet
+ * \param E_tilde E_tilde of the protojet
+ */
+ double get_sm_var2(CSphmomentum &v, double &E_tilde);
+
+ /// compute Etilde for a given jet
+ void compute_Etilde(CSphjet &j);
+
+ // jet information
+ /// list of jet candidates
+#ifdef SISCONE_USES_UNIQUE_PTR_AS_AUTO_PTR
+ std::unique_ptr<std::multiset<CSphjet,CSphsplit_merge_ptcomparison> > candidates;
+#else
+ std::auto_ptr<std::multiset<CSphjet,CSphsplit_merge_ptcomparison> > candidates;
+#endif
+
+ /// minimal E
+ double E_min;
+
+ /**
+ * do we have or not to use the energy-weighted splitting
+ * (see description for set_E_weighted_splitting)
+ * This will be false by default
+ */
+ bool use_E_weighted_splitting;
+
+ /// use a user-defined scale to order the stable cones and jet
+ /// candidates
+ const Cuser_scale_base *_user_scale;
+
+#ifdef ALLOW_MERGE_IDENTICAL_PROTOCONES
+ /// checkxor for the candidates (to avoid having twice the same contents)
+ std::set<siscone::Creference> cand_refs;
+#endif
+};
+
+}
+
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/split_merge.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/geom_2d.h
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/geom_2d.h (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/geom_2d.h (revision 420)
@@ -0,0 +1,112 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: geom_2d.h //
+// Description: header file for two-dimensional geometry tools //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __SPH_GEOM_2D_H__
+#define __SPH_GEOM_2D_H__
+
+#include <iostream>
+#include <math.h>
+#include <siscone/defines.h>
+#include <siscone/geom_2d.h>
+
+#ifndef M_PI
+#define M_PI 3.141592653589793238462643383279502884197
+#endif
+
+namespace siscone_spherical{
+
+/**
+ * \class CSphtheta_phi_range
+ * \brief class for holding a covering range in eta-phi
+ *
+ * This class deals with ranges in the eta-phi plane. It
+ * implements methods to test if two ranges overlap and
+ * to take the union of two overlapping intervals.
+ */
+class CSphtheta_phi_range{
+public:
+ /// default ctor
+ CSphtheta_phi_range();
+
+ /// ctor with initialisation
+ /// we initialise with a centre (in theta,phi) and a radius
+ /// \param c_theta theta coordinate of the centre
+ /// \param c_phi phi coordinate of the centre
+ /// \param R radius
+ CSphtheta_phi_range(double c_theta, double c_phi, double R);
+
+ /// assignment of range
+ /// \param r range to assign to current one
+ CSphtheta_phi_range& operator = (const CSphtheta_phi_range &r);
+
+ /// add a particle to the range
+ /// \param theta theta coordinate of the particle
+ /// \param phi phi coordinate of the particle
+ /// \return 0 on success, 1 on error
+ int add_particle(const double theta, const double phi);
+
+ /// theta range as a binary coding of covered cells
+ unsigned int theta_range;
+
+ /// phi range as a binary coding of covered cells
+ unsigned int phi_range;
+
+ /// extremal value for theta
+ static double theta_min; ///< minimal value for theta (set to 0)
+ static double theta_max; ///< maximal value for theta (set to pi)
+
+private:
+ /// return the cell index corrsponding to a theta value
+ inline unsigned int get_theta_cell(double theta){
+ if (theta>=theta_max) return 1<<31;
+ return (unsigned int) (1 << ((int) (32*((theta-theta_min)/(theta_max-theta_min)))));
+ }
+
+ /// return the cell index corrsponding to a phi value
+ inline unsigned int get_phi_cell(double phi){
+ return (unsigned int) (1 << ((int) (32*phi/twopi+16)%32));
+ }
+};
+
+/// test overlap
+/// \param r1 first range
+/// \param r2 second range
+/// \return true if overlap, false otherwise.
+bool is_range_overlap(const CSphtheta_phi_range &r1, const CSphtheta_phi_range &r2);
+
+/// compute union
+/// Note: we assume that the two intervals overlap
+/// \param r1 first range
+/// \param r2 second range
+/// \return union of the two ranges
+const CSphtheta_phi_range range_union(const CSphtheta_phi_range &r1, const CSphtheta_phi_range &r2);
+
+}
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/spherical/geom_2d.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Revision
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/makefile.static
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/makefile.static (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/makefile.static (revision 420)
@@ -0,0 +1,64 @@
+CC = g++
+LIBOUT = libsiscone_spherical.a
+CFLAGS = -Wall -g -O3 -ffast-math -I../..
+
+LDFLAGS = -lm #-lprofiler -lpthread -ltcmalloc
+ifeq ($(shell whoami),salam)
+ # needed for Gavin to include tcmalloc
+ LDFLAGS += -L/ada1/lpthe/salam/software/local/lib
+endif
+
+OBJS = geom_2d.o momentum.o hash.o\
+ vicinity.o protocones.o split_merge.o siscone.o
+
+SRCS = $(patsubst %.o,%.cpp,$(OBJS))
+
+
+%.o: %.cpp %.h
+ $(CC) -c $(CFLAGS) $<
+
+%.o: %.cpp
+ $(CC) -c $(CFLAGS) $<
+
+all: $(OBJS)
+ ar cru $(LIBOUT) $(OBJS)
+ ranlib $(LIBOUT)
+
+.PHONY: clean
+
+clean:
+ rm -f *.o *~
+
+
+# note the -Y option below avoids including all the standard
+# include directories (which change from one system to another)
+depend:
+ makedepend -I../.. -f makefile.static -- -Y -- $(SRCS)
+# DO NOT DELETE
+
+geom_2d.o: geom_2d.h ../../siscone/defines.h ../../siscone/geom_2d.h
+geom_2d.o: ../../siscone/defines.h
+momentum.o: momentum.h ../../siscone/reference.h geom_2d.h
+momentum.o: ../../siscone/defines.h ../../siscone/geom_2d.h
+momentum.o: ../../siscone/defines.h
+hash.o: hash.h momentum.h ../../siscone/reference.h geom_2d.h
+hash.o: ../../siscone/defines.h ../../siscone/geom_2d.h
+hash.o: ../../siscone/defines.h
+vicinity.o: vicinity.h ../../siscone/vicinity.h momentum.h
+vicinity.o: ../../siscone/reference.h geom_2d.h ../../siscone/defines.h
+vicinity.o: ../../siscone/geom_2d.h ../../siscone/defines.h
+vicinity.o: ../../siscone/quadtree.h
+protocones.o: ../../siscone/defines.h ../../siscone/siscone_error.h
+protocones.o: ../../siscone/circulator.h protocones.h momentum.h
+protocones.o: ../../siscone/reference.h geom_2d.h ../../siscone/geom_2d.h
+protocones.o: ../../siscone/defines.h vicinity.h ../../siscone/vicinity.h
+protocones.o: ../../siscone/quadtree.h hash.h
+split_merge.o: ../../siscone/siscone_error.h split_merge.h
+split_merge.o: ../../siscone/defines.h geom_2d.h ../../siscone/geom_2d.h
+split_merge.o: ../../siscone/defines.h momentum.h ../../siscone/reference.h
+siscone.o: ../../siscone/config.h ../../siscone/ranlux.h
+siscone.o: ../../siscone/siscone_error.h ../../siscone/defines.h momentum.h
+siscone.o: ../../siscone/reference.h geom_2d.h ../../siscone/geom_2d.h
+siscone.o: ../../siscone/defines.h siscone.h protocones.h vicinity.h
+siscone.o: ../../siscone/vicinity.h ../../siscone/quadtree.h hash.h
+siscone.o: split_merge.h
Index: tags/siscone-3.0.4/siscone/spherical/hash.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/hash.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/hash.cpp (revision 420)
@@ -0,0 +1,207 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: hash.cpp //
+// Description: source file for classes sph_hash_element and sph_hash_cones //
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006-2008 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <math.h>
+#include <stdio.h>
+#include "hash.h"
+#include <iostream>
+
+namespace siscone_spherical{
+
+using namespace std;
+
+/**************************************************************
+ * implementation of sph_hash_cones *
+ * list of cones candidates. *
+ * We store in this class all the sph_hash_element and give *
+ * functions to manipulate them. *
+ **************************************************************/
+
+// constructor with initialisation
+// - _Np number of particles
+// - _radius cone radius
+//-----------------------------------
+sph_hash_cones::sph_hash_cones(int _Np, double _radius){
+ int i;
+
+ n_cones = 0;
+#ifdef DEBUG_STABLE_CONES
+ n_occupied_cells = 0;
+#endif
+
+ // determine hash size
+ // for a ymax=5 and R=0.7, we observed an occupancy around 1/8 N^2 ~ N2 R2/4
+ //mask = 1 << (int) (2*log(double(_Np))/log(2.0));
+ //if (mask<=1) mask=2;
+ int nbits = (int) (log(_Np*_radius*_radius*_Np/4.0)/log(2.0));
+ if (nbits<1) nbits=1;
+ mask = 1 << nbits;
+
+ // create hash
+ hash_array = new sph_hash_element*[mask];
+ mask--;
+
+ // set the array to 0
+ //? needed ?
+ for (i=0;i<mask+1;i++)
+ hash_array[i] = NULL;
+
+ tan2R = tan(_radius);
+ tan2R *= tan2R;
+}
+
+// destructor
+//------------
+sph_hash_cones::~sph_hash_cones(){
+ int i;
+ sph_hash_element *elm;
+
+ for (i=0;i<mask+1;i++){
+ while (hash_array[i]!=NULL){
+ elm = hash_array[i];
+ hash_array[i] = hash_array[i]->next;
+ delete elm;
+ }
+ }
+
+ delete[] hash_array;
+}
+
+
+/*
+ * insert a new candidate into the hash.
+ * - v 4-momentum of the cone to add
+ * - parent parent particle defining the cone
+ * - child child particle defining the cone
+ * - p_io whether the parent has to belong to the cone or not
+ * - c_io whether the child has to belong to the cone or not
+ * return 0 on success, 1 on error
+ ***********************************************************************/
+int sph_hash_cones::insert(CSphmomentum *v, CSphmomentum *parent, CSphmomentum *child, bool p_io, bool c_io){
+ sph_hash_element *elm;
+ int index = (v->ref.ref[0]) & mask;
+
+ // check the array cell corresponding to our reference
+ elm = hash_array[index];
+
+#ifdef DEBUG_STABLE_CONES
+ if (elm==NULL)
+ n_occupied_cells++;
+#endif
+
+ do{
+ // if it is not present, add it
+ if (elm==NULL){
+ // create element
+ elm = new sph_hash_element;
+
+ // set its varibles
+ // Note: at this level, eta and phi have already been computed
+ // through CSphmomentum::build_thetaphi.
+ elm->centre = *v;
+
+ // if at least one of the two is_closer tests gives a result != from the expected,
+ // the || will be true hence !(...) false as wanted
+ elm->is_stable = !((is_closer(v, parent, tan2R)^p_io)||(is_closer(v, child, tan2R)^c_io));
+ //cout << "-- new status of " << v->ref[0] << ":" << elm->is_stable << endl;
+
+ // update hash
+ elm->next = hash_array[index];
+ hash_array[index] = elm;
+
+ n_cones++;
+ return 0;
+ }
+
+ // if the cone is already there, simply update stability status
+ if (v->ref == elm->centre.ref){
+ // there is only an update to perform to see if the cone is still stable
+ if (elm->is_stable){
+ elm->is_stable = !((is_closer(v, parent, tan2R)^p_io)||(is_closer(v, child, tan2R)^c_io));
+ //cout << " parent/child: "
+ // << parent->ref[0] << ":" << is_closer(v, parent) << ":" << p_io << " "
+ // << child->ref[0] << ":" << is_closer(v, child) << ":" << c_io << endl;
+ //cout << "-- rep status of " << v->ref[0] << ":" << elm->is_stable << endl;
+ //cout << v->eta << " " << v->phi << endl;
+ //cout << (child->eta) << " " << child->phi << endl;
+ }
+ return 0;
+ }
+
+ elm = elm->next;
+ } while (1);
+
+ return 1;
+}
+
+/*
+ * insert a new candidate into the hash.
+ * - v 4-momentum of te cone to add
+ * Note, in this case, we assume stability. We also assume
+ * that eta and phi are computed for v
+ * return 0 on success, 1 on error
+ ***********************************************************************/
+int sph_hash_cones::insert(CSphmomentum *v){
+ sph_hash_element *elm;
+ int index = (v->ref.ref[0]) & mask;
+ //cout << "-- stable candidate: " << v->ref[0] << ":" << endl;
+
+ // check the array cell corresponding to our reference
+ elm = hash_array[index];
+ do{
+ // if it is not present, add it
+ if (elm==NULL){
+ // create element
+ elm = new sph_hash_element;
+
+ // set its varibles
+ // Note: at this level, eta and phi have already been computed
+ // through CSphmomentum::build_thetaphi.
+ elm->centre = *v;
+ elm->is_stable = true;
+
+ // update hash
+ elm->next = hash_array[index];
+ hash_array[index] = elm;
+
+ n_cones++;
+ return 0;
+ }
+
+ // if the cone is already there, we have nothing to do
+ if (v->ref == elm->centre.ref){
+ return 0;
+ }
+
+ elm = elm->next;
+ } while (1);
+
+ return 1;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/spherical/hash.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/spherical/.gitignore
===================================================================
--- tags/siscone-3.0.4/siscone/spherical/.gitignore (revision 0)
+++ tags/siscone-3.0.4/siscone/spherical/.gitignore (revision 420)
@@ -0,0 +1,4 @@
+/Makefile.in
+/.deps
+/Makefile
+/.libs
Index: tags/siscone-3.0.4/siscone/spherical
===================================================================
--- tags/siscone-3.0.4/siscone/spherical (revision 419)
+++ tags/siscone-3.0.4/siscone/spherical (revision 420)
Property changes on: tags/siscone-3.0.4/siscone/spherical
___________________________________________________________________
Added: svn:ignore
## -0,0 +1,7 ##
+Makefile.in
+
+.deps
+
+Makefile
+
+.libs
Index: tags/siscone-3.0.4/siscone/protocones.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/protocones.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/protocones.cpp (revision 420)
@@ -0,0 +1,849 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: protocones.cpp //
+// Description: source file for stable cones determination (Cstable_cones) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+/*******************************************************
+ * Introductory note: *
+ * Since this file has many member functions, we have *
+ * structured them in categories: *
+ * INITIALISATION FUNCTIONS *
+ * - ctor() *
+ * - ctor(particle_list) *
+ * - dtor() *
+ * - init(particle_list) *
+ * ALGORITHM MAIN ENTRY *
+ * - get_stable_cone(radius) *
+ * ALGORITHM MAIN STEPS *
+ * - init_cone() *
+ * - test_cone() *
+ * - update_cone() *
+ * - proceed_with_stability() *
+ * ALGORITHM MAIN STEPS FOR COCIRCULAR SITUATIONS *
+ * - cocircular_pt_less(v1, v2) *
+ * - prepare_cocircular_list() *
+ * - test_cone_cocircular() *
+ * - test_stability(candidate, border_list) *
+ * - updat_cone_cocircular() *
+ * RECOMPUTATION OF CONE CONTENTS *
+ * - compute_cone_contents() *
+ * - recompute_cone_contents() *
+ * - recompute_cone_contents_if_needed() *
+ * VARIOUS TOOLS *
+ * - circle_intersect() *
+ * - is_inside() *
+ * - abs_dangle() *
+ *******************************************************/
+
+#include "protocones.h"
+#include "siscone_error.h"
+#include "defines.h"
+#include <math.h>
+#include <iostream>
+#include "circulator.h"
+#include <algorithm>
+
+namespace siscone{
+
+using namespace std;
+
+/**********************************************************************
+ * Cstable_cones implementation *
+ * Computes the list of stable comes from a particle list. *
+ * This class does the first fundamental task of te cone algorithm: *
+ * it is used to compute the list of stable cones given a list *
+ * of particles. *
+ **********************************************************************/
+
+////////////////////////////////////////////////////////
+// INITIALISATION FUNCTIONS //
+// - ctor() //
+// - ctor(particle_list) //
+// - dtor() //
+// - init(particle_list) //
+////////////////////////////////////////////////////////
+
+// default ctor
+//--------------
+Cstable_cones::Cstable_cones(){
+ nb_tot = 0;
+ hc = NULL;
+}
+
+// ctor with initialisation
+//--------------------------
+Cstable_cones::Cstable_cones(vector<Cmomentum> &_particle_list)
+ : Cvicinity(_particle_list){
+
+ nb_tot = 0;
+ hc = NULL;
+}
+
+// default dtor
+//--------------
+Cstable_cones::~Cstable_cones(){
+ if (hc!=NULL) delete hc;
+}
+
+/*
+ * initialisation
+ * - _particle_list list of particles
+ * - _n number of particles
+ *********************************************************************/
+void Cstable_cones::init(vector<Cmomentum> &_particle_list){
+ // check already allocated mem
+ if (hc!=NULL){
+ delete hc;
+ }
+ if (protocones.size()!=0)
+ protocones.clear();
+
+ multiple_centre_done.clear();
+
+ // initialisation
+ set_particle_list(_particle_list);
+}
+
+
+////////////////////////////////////////////////////////
+// ALGORITHM MAIN ENTRY //
+// - get_stable_cone(radius) //
+////////////////////////////////////////////////////////
+
+/*
+ * compute stable cones.
+ * This function really does the job i.e. computes
+ * the list of stable cones (in a seedless way)
+ * - _radius: radius of the cones
+ * The number of stable cones found is returned
+ *********************************************************************/
+int Cstable_cones::get_stable_cones(double _radius){
+ int p_idx;
+
+ // check if everything is correctly initialised
+ if (n_part==0){
+ return 0;
+ }
+
+ R = _radius;
+ R2 = R*R;
+
+ // allow hash for cones candidates
+ hc = new hash_cones(n_part, R2);
+
+ // browse all particles
+ for (p_idx=0;p_idx<n_part;p_idx++){
+ // step 0: compute the child list CL.
+ // Note that this automatically sets the parent P
+ build(&plist[p_idx], 2.0*R);
+
+ // special case:
+ // if the vicinity is empty, the parent particle is a
+ // stable cone by itself. Add it to protocones list.
+ if (vicinity_size==0){
+ protocones.push_back(*parent);
+ continue;
+ }
+
+ // step 1: initialise with the first cone candidate
+ init_cone();
+
+ do{
+ // step 2: test cone stability for that pair (P,C)
+ test_cone();
+
+ // step 3: go to the next cone child candidate C
+ } while (!update_cone());
+ }
+
+ return proceed_with_stability();
+}
+
+
+////////////////////////////////////////////////////////
+// ALGORITHM MAIN STEPS //
+// - init_cone() //
+// - test_cone() //
+// - update_cone() //
+// - proceed_with_stability() //
+////////////////////////////////////////////////////////
+
+/*
+ * initialise the cone.
+ * We take the first particle in the angular ordering to compute
+ * this one
+ * return 0 on success, 1 on error
+ *********************************************************************/
+int Cstable_cones::init_cone(){
+ // The previous version of the algorithm was starting the
+ // loop around vicinity elements with the "most isolated" child.
+ // given the nodist method to calculate the cone contents, we no
+ // longer need to worry about which cone comes first...
+ first_cone=0;
+
+ // now make sure we have lists of the cocircular particles
+ prepare_cocircular_lists();
+
+ //TODO? deal with a configuration with only degeneracies ?
+ // The only possibility seems a regular hexagon with a parent point
+ // in the centre. And this situation is by itself unclear.
+ // Hence, we do nothing here !
+
+ // init set child C
+ centre = vicinity[first_cone];
+ child = centre->v;
+ centre_idx = first_cone;
+
+ // build the initial cone (nodist: avoids calculating distances --
+ // just deduces contents by circulating around all in/out operations)
+ // this function also sets the list of included particles
+ compute_cone_contents();
+
+ return 0;
+}
+
+
+/*
+ * test cones.
+ * We check if the cone(s) built with the present parent and child
+ * are stable
+ * return 0 on success 1 on error
+ *********************************************************************/
+int Cstable_cones::test_cone(){
+ Creference weighted_cone_ref;
+
+ // depending on the side we are taking the child particle,
+ // we test different configuration.
+ // Each time, two configurations are tested in such a way that
+ // all 4 possible cases (parent or child in or out the cone)
+ // are tested when taking the pair of particle parent+child
+ // and child+parent.
+
+ // here are the tests entering the first series:
+ // 1. check if the cone is already inserted
+ // 2. check cone stability for the parent and child particles
+
+ if (centre->side){
+ // test when both particles are not in the cone
+ // or when both are in.
+ // Note: for the totally exclusive case, test emptyness before
+ cone_candidate = cone;
+ if (cone.ref.not_empty()){
+ hc->insert(&cone_candidate, parent, child, false, false);
+ }
+
+ cone_candidate = cone;
+ cone_candidate+= *parent + *child;
+ hc->insert(&cone_candidate, parent, child, true, true);
+ } else {
+ // test when 1! of the particles is in the cone
+ cone_candidate = cone + *parent;
+ hc->insert(&cone_candidate, parent, child, true, false);
+
+ cone_candidate = cone + *child;
+ hc->insert(&cone_candidate, parent, child, false, true);
+ }
+
+ nb_tot+=2;
+
+ return 0;
+}
+
+
+/*
+ * update the cone
+ * go to the next child for that parent and update 'cone' appropriately
+ * return 0 if update candidate found, 1 otherwise
+ ***********************************************************************/
+int Cstable_cones::update_cone(){
+ // get the next child and centre
+ centre_idx++;
+ if (centre_idx==vicinity_size)
+ centre_idx=0;
+ if (centre_idx==first_cone)
+ return 1;
+
+ // update the cone w.r.t. the old child
+ // only required if the old child is entering inside in which
+ // case we need to add it. We also know that the child is
+ // inside iff its side is -.
+ if (!centre->side){
+ // update cone
+ cone += (*child);
+
+ // update info on particles inside
+ centre->is_inside->cone = true;
+
+ // update stability check quantities
+ dpt += fabs(child->px)+fabs(child->py);
+ }
+
+ // update centre and child to correspond to the new position
+ centre = vicinity[centre_idx];
+ child = centre->v;
+
+ // check cocircularity
+ // note that if cocirculaity is detected (i.e. if we receive 1
+ // in the next test), we need to recall 'update_cone' directly
+ // since tests and remaining part of te update has been performed
+ //if (cocircular_check())
+ if (cocircular_check())
+ return update_cone();
+
+
+ // update the cone w.r.t. the new child
+ // only required if the new child was already inside in which
+ // case we need to remove it. We also know that the child is
+ // inside iff its side is +.
+ if ((centre->side) && (cone.ref.not_empty())){
+ // update cone
+ cone -= (*child);
+
+ // update info on particles inside
+ centre->is_inside->cone = false;
+
+ // update stability check quantities
+ dpt += fabs(child->px)+fabs(child->py); //child->perp2();
+ }
+
+ // check that the addition and subtraction of vectors does
+ // not lead to too much rounding error
+ // for that, we compute the sum of pt modifications and of |pt|
+ // since last recomputation and once the ratio overpasses a threshold
+ // we recompute vicinity.
+ if ((dpt>PT_TSHOLD*(fabs(cone.px)+fabs(cone.py))) && (cone.ref.not_empty())){
+ recompute_cone_contents();
+ }
+ if (cone.ref.is_empty()){
+ cone = Cmomentum();
+ dpt=0.0;
+ }
+
+ return 0;
+}
+
+
+/*
+ * compute stability of all enumerated candidates.
+ * For all candidate cones which are stable w.r.t. their border particles,
+ * pass the last test: stability with quadtree intersection
+ ************************************************************************/
+int Cstable_cones::proceed_with_stability(){
+ int i; // ,n;
+ hash_element *elm;
+
+ //n=0;
+ for (i=0;i<=hc->mask;i++){
+ // test ith cell of the hash array
+ elm = hc->hash_array[i];
+
+ // browse elements therein
+ while (elm!=NULL){
+ // test stability
+ if (elm->is_stable){
+ // stability is not ensured by all pairs of "edges" already browsed
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ // => testing stability with quadtree intersection
+ if (quadtree->circle_intersect(elm->eta, elm->phi, R2)==elm->ref){
+#else
+ // => testing stability with the particle-list intersection
+ if (circle_intersect(elm->eta, elm->phi)==elm->ref){
+#endif
+ // add it to the list of protocones
+ // note that in its present form, we do not allocate the
+ // 4-vector components of the momentum. There's no need to
+ // do it here as it will be recomputed in
+ // Csplit_merge::add_protocones
+ protocones.push_back(Cmomentum(elm->eta, elm->phi, elm->ref));
+ }
+ }
+
+ // jump to the next one
+ elm = elm->next;
+ }
+ }
+
+ // free hash
+ // we do that at this level because hash eats rather a lot of memory
+ // we want to free it before running the split/merge algorithm
+#ifdef DEBUG_STABLE_CONES
+ nb_hash_cones = hc->n_cones;
+ nb_hash_occupied = hc->n_occupied_cells;
+#endif
+
+ delete hc;
+ hc=NULL;
+
+ return protocones.size();
+}
+
+
+////////////////////////////////////////////////////////
+// ALGORITHM MAIN STEPS FOR COCIRCULAR SITUATIONS //
+// - cocircular_pt_less(v1, v2) //
+// - prepare_cocircular_list() //
+// - test_cone_cocircular() //
+// - test_stability(candidate, border_vect) //
+// - updat_cone_cocircular() //
+////////////////////////////////////////////////////////
+
+/// pt-ordering of momenta used for the cocircular case
+bool cocircular_pt_less(Cmomentum *v1, Cmomentum *v2){
+ return v1->perp2() < v2->perp2();
+}
+
+/*
+ * run through the vicinity of the current parent and for each child
+ * establish which other members are cocircular... Note that the list
+ * associated with each child contains references to vicinity
+ * elements: thus two vicinity elements each associated with one given
+ * particle may appear in a list -- this needs to be watched out for
+ * later on...
+ **********************************************************************/
+void Cstable_cones::prepare_cocircular_lists() {
+ circulator<vector<Cvicinity_elm*>::iterator > here(vicinity.begin(),
+ vicinity.begin(),
+ vicinity.end());
+
+ circulator<vector<Cvicinity_elm*>::iterator > search(here);
+
+ do {
+ Cvicinity_elm* here_pntr = *here();
+ search.set_position(here);
+
+ // search forwards for things that should have "here" included in
+ // their cocircularity list
+ while (true) {
+ ++search;
+ if ( abs_dphi((*search())->angle, here_pntr->angle) <
+ here_pntr->cocircular_range
+ && search() != here()) {
+ (*search())->cocircular.push_back(here_pntr);
+ } else {
+ break;
+ }
+ }
+
+ // search backwards
+ search.set_position(here);
+ while (true) {
+ --search;
+ if ( abs_dphi((*search())->angle, here_pntr->angle) <
+ here_pntr->cocircular_range
+ && search() != here()) {
+ (*search())->cocircular.push_back(here_pntr);
+ } else {
+ break;
+ }
+ }
+
+ ++here;
+ } while (here() != vicinity.begin());
+
+}
+
+/*
+ * Testing cocircular configurations in p^3 time,
+ * rather than 2^p time; we will test all contiguous subsets of points
+ * on the border --- note that this is till probably overkill, since
+ * in principle we only have to test situations where up to a
+ * half-circle is filled (but going to a full circle is simpler)
+ ******************************************************************/
+void Cstable_cones::test_cone_cocircular(Cmomentum & borderless_cone,
+ list<Cmomentum *> & border_list) {
+ vector<Cborder_store> border_vect;
+
+ border_vect.reserve(border_list.size());
+ for (list<Cmomentum *>::iterator it = border_list.begin();
+ it != border_list.end(); it++) {
+ border_vect.push_back(Cborder_store(*it, centre->eta, centre->phi));
+ }
+
+ // get them into order of angle
+ sort(border_vect.begin(), border_vect.end());
+
+ // set up some circulators, since these will help us go around the
+ // circle easily
+ circulator<vector<Cborder_store>::iterator >
+ start(border_vect.begin(), border_vect.begin(),border_vect.end());
+ circulator<vector<Cborder_store>::iterator > mid(start), end(start);
+
+ // test the borderless cone
+ Cmomentum candidate = borderless_cone;
+ candidate.build_etaphi();
+ if (candidate.ref.not_empty())
+ test_stability(candidate, border_vect);
+
+ do {
+ // reset status wrt inclusion in the cone
+ mid = start;
+ do {
+ mid()->is_in = false;
+ } while (++mid != start);
+
+ // now run over all inclusion possibilities with this starting point
+ candidate = borderless_cone;
+ while (++mid != start) {
+ // will begin with start+1 and go up to start-1
+ mid()->is_in = true;
+ candidate += *(mid()->mom);
+ test_stability(candidate, border_vect);
+ }
+
+ } while (++start != end);
+
+ // mid corresponds to momentum that we need to include to get the
+ // full cone
+ mid()->is_in = true;
+ candidate += *(mid()->mom);
+ test_stability(candidate, border_vect);
+}
+
+
+/**
+ * carry out the computations needed for the stability check of the
+ * candidate, using the border_vect to indicate which particles
+ * should / should not be in the stable cone; if the cone is stable
+ * insert it into the hash.
+ **********************************************************************/
+void Cstable_cones::test_stability(Cmomentum & candidate, const vector<Cborder_store> & border_vect) {
+
+ // this almost certainly has not been done...
+ candidate.build_etaphi();
+
+ bool stable = true;
+ for (unsigned i = 0; i < border_vect.size(); i++) {
+ if (is_inside(&candidate, border_vect[i].mom) ^ (border_vect[i].is_in)) {
+ stable = false;
+ break; // it's unstable so there's no point continuing
+ }
+ }
+
+ if (stable) hc->insert(&candidate);
+}
+
+/*
+ * check if we are in a situation of cocircularity.
+ * if it is the case, update and test in the corresponding way
+ * return 'false' if no cocircularity detected, 'true' otherwise
+ * Note that if cocircularity is detected, we need to
+ * recall 'update' from 'update' !!!
+ ***************************************************************/
+bool Cstable_cones::cocircular_check(){
+ // check if many configurations have the same centre.
+ // if this is the case, branch on the algorithm for this
+ // special case.
+ // Note that those situation, being considered separately in
+ // test_cone_multiple, must only be considered here if all
+ // angles are on the same side (this avoid multiple counting)
+
+ if (centre->cocircular.empty()) return false;
+
+ // first get cone into status required at end...
+ if ((centre->side) && (cone.ref.not_empty())){
+ // update cone
+ cone -= (*child);
+
+ // update info on particles inside
+ centre->is_inside->cone = false;
+
+ // update stability check quantities
+ dpt += fabs(child->px)+fabs(child->py); //child->perp2();
+ }
+
+
+ // now establish the list of unique children in the list
+ // first make sure parent and child are in!
+
+ list<Cvicinity_inclusion *> removed_from_cone;
+ list<Cvicinity_inclusion *> put_in_border;
+ list<Cmomentum *> border_list;
+
+ Cmomentum cone_removal;
+ Cmomentum border = *parent;
+ border_list.push_back(parent);
+
+ // make sure child appears in the border region
+ centre->cocircular.push_back(centre);
+
+ // now establish the full contents of the cone minus the cocircular
+ // region and of the cocircular region itself
+ for(list<Cvicinity_elm *>::iterator it = centre->cocircular.begin();
+ it != centre->cocircular.end(); it++) {
+
+ if ((*it)->is_inside->cone) {
+ cone_removal += *((*it)->v);
+ (*it)->is_inside->cone = false;
+ removed_from_cone.push_back((*it)->is_inside);
+ }
+
+ // if a point appears twice (i.e. with + and - sign) in the list of
+ // points on the border, we take care not to include it twice.
+ // Note that this situation may appear when a point is at a distance
+ // close to 2R from the parent
+ if (!(*it)->is_inside->cocirc) {
+ border += *((*it)->v);
+ (*it)->is_inside->cocirc = true;
+ put_in_border.push_back((*it)->is_inside);
+ border_list.push_back((*it)->v);
+ }
+ }
+
+
+ // figure out whether this pairing has been observed before
+ Cmomentum borderless_cone = cone;
+ borderless_cone -= cone_removal;
+ bool consider = true;
+ for (unsigned int i=0;i<multiple_centre_done.size();i++){
+ if ((multiple_centre_done[i].first ==borderless_cone.ref) &&
+ (multiple_centre_done[i].second==border.ref))
+ consider = false;
+ }
+
+ // now prepare the hard work
+ if (consider) {
+ // record the fact that we've now seen this combination
+ multiple_centre_done.push_back(pair<Creference,Creference>(borderless_cone.ref,
+ border.ref));
+
+ // first figure out whether our cone momentum is good
+ double local_dpt = fabs(cone_removal.px) + fabs(cone_removal.py);
+ double total_dpt = dpt + local_dpt;
+
+ recompute_cone_contents_if_needed(borderless_cone, total_dpt);
+ if (total_dpt == 0) {
+ // a recomputation has taken place -- so take advantage of this
+ // and update the member cone momentum
+ cone = borderless_cone + cone_removal;
+ dpt = local_dpt;
+ }
+
+ test_cone_cocircular(borderless_cone, border_list);
+ }
+
+
+ // relabel things that were in the cone but got removed
+ for(list<Cvicinity_inclusion *>::iterator is_in = removed_from_cone.begin();
+ is_in != removed_from_cone.end(); is_in++) {
+ (*is_in)->cone = true;
+ }
+
+ // relabel things that got put into the border
+ for(list<Cvicinity_inclusion *>::iterator is_in = put_in_border.begin();
+ is_in != put_in_border.end(); is_in++) {
+ (*is_in)->cocirc = false;
+ }
+
+ // we're done with everything -- return true to signal to user that we've
+ // been through the co-circularity rigmarole
+ return true;
+}
+
+
+////////////////////////////////////////////////////////
+// RECOMPUTATION OF CONE CONTENTS //
+// - compute_cone_contents() //
+// - recompute_cone_contents() //
+// - recompute_cone_contents_if_needed() //
+////////////////////////////////////////////////////////
+
+/**
+ * compute the cone contents by going once around the full set of
+ * circles and tracking the entry/exit status each time
+ * given parent, child and centre compute the momentum
+ * of the particle inside the cone
+ * This sets up the inclusion information, which can then be directly
+ * used to calculate the cone momentum.
+ **********************************************************************/
+void Cstable_cones::compute_cone_contents() {
+ circulator<vector<Cvicinity_elm*>::iterator >
+ start(vicinity.begin()+first_cone, vicinity.begin(), vicinity.end());
+
+ circulator<vector<Cvicinity_elm*>::iterator > here(start);
+
+ // note that in the following algorithm, the cone contents never includes
+ // the child. Indeed, if it has positive sign, then it will be set as
+ // outside at the last step in the loop. If it has negative sign, then the
+ // loop will at some point go to the corresponding situation with positive
+ // sign and set the inclusion status to 0.
+
+ do {
+ // as we leave this position a particle enters if its side is
+ // negative (i.e. the centre is the one at -ve angle wrt to the
+ // parent-child line
+ if (!(*here())->side) ((*here())->is_inside->cone) = 1;
+
+ // move on to the next position
+ ++here;
+
+ // as we arrive at this position a particle leaves if its side is positive
+ if ((*here())->side) ((*here())->is_inside->cone) = 0;
+ } while (here != start);
+
+ // once we've reached the start the 'is_inside' information should be
+ // 100% complete, so we can use it to calculate the cone contents
+ // and then exit
+ recompute_cone_contents();
+ return;
+
+}
+
+
+/*
+ * compute the cone momentum from particle list.
+ * in this version, we use the 'pincluded' information
+ * from the Cvicinity class
+ */
+void Cstable_cones::recompute_cone_contents(){
+ unsigned int i;
+
+ // set momentum to 0
+ cone = Cmomentum();
+
+ // Important note: we can browse only the particles
+ // in vicinity since all particles in the cone are
+ // withing a distance 2R w.r.t. parent hence in vicinity.
+ // Among those, we only add the particles for which 'is_inside' is true !
+ // This methos rather than a direct comparison avoids rounding errors
+ for (i=0;i<vicinity_size;i++){
+ // to avoid double-counting, only use particles with + angle
+ if ((vicinity[i]->side) && (vicinity[i]->is_inside->cone))
+ cone += *vicinity[i]->v;
+ }
+
+ // set check variables back to 0
+ dpt = 0.0;
+}
+
+
+/*
+ * if we have gone beyond the acceptable threshold of change, compute
+ * the cone momentum from particle list. in this version, we use the
+ * 'pincluded' information from the Cvicinity class, but we don't
+ * change the member cone, only the locally supplied one
+ */
+void Cstable_cones::recompute_cone_contents_if_needed(Cmomentum & this_cone,
+ double & this_dpt){
+
+ if (this_dpt > PT_TSHOLD*(fabs(this_cone.px)+fabs(this_cone.py))) {
+ if (cone.ref.is_empty()) {
+ this_cone = Cmomentum();
+ } else {
+ // set momentum to 0
+ this_cone = Cmomentum();
+
+ // Important note: we can browse only the particles
+ // in vicinity since all particles in the this_cone are
+ // withing a distance 2R w.r.t. parent hence in vicinity.
+ // Among those, we only add the particles for which 'is_inside' is true !
+ // This methos rather than a direct comparison avoids rounding errors
+ for (unsigned int i=0;i<vicinity_size;i++){
+ // to avoid double-counting, only use particles with + angle
+ if ((vicinity[i]->side) && (vicinity[i]->is_inside->cone))
+ this_cone += *vicinity[i]->v;
+ }
+
+ }
+ // set check variables back to 0
+ this_dpt = 0.0;
+ }
+
+}
+
+
+////////////////////////////////////////////////////////
+// VARIOUS TOOLS //
+// - circle_intersect() //
+// - is_inside() //
+// - abs_dangle() //
+////////////////////////////////////////////////////////
+
+
+/*
+ * circle intersection.
+ * computes the intersection with a circle of given centre and radius.
+ * The output takes the form of a checkxor of the intersection's particles
+ * - cx circle centre x coordinate
+ * - cy circle centre y coordinate
+ * return the checkxor for the intersection
+ ******************************************************************/
+Creference Cstable_cones::circle_intersect(double cx, double cy){
+ Creference intersection;
+ int i;
+ double dx, dy;
+
+ for (i=0;i<n_part;i++){
+ // compute the distance of the i-th particle with the parent
+ dx = plist[i].eta - cx;
+ dy = fabs(plist[i].phi - cy);
+
+ // pay attention to the periodicity in phi !
+ if (dy>M_PI)
+ dy -= twopi;
+
+ // really check if the distance is less than VR
+ if (dx*dx+dy*dy<R2)
+ intersection+=plist[i].ref;
+ }
+
+ return intersection;
+}
+
+/*
+ * test if a particle is inside a cone of given centre.
+ * check if the particle of coordinates 'v' is inside the circle of radius R
+ * centered at 'centre'.
+ * - centre centre of the circle
+ * - v particle to test
+ * return true if inside, false if outside
+ *****************************************************************************/
+inline bool Cstable_cones::is_inside(Cmomentum *centre_in, Cmomentum *v){
+ double dx, dy;
+
+ dx = centre_in->eta - v->eta;
+ dy = fabs(centre_in->phi - v->phi);
+ if (dy>M_PI)
+ dy -= twopi;
+
+ return dx*dx+dy*dy<R2;
+}
+
+/*
+ * compute the absolute value of the difference between 2 angles.
+ * We take care of the 2pi periodicity
+ * - angle1 first angle
+ * - angle2 second angle
+ * return the absolute value of the difference between the angles
+ *****************************************************************/
+inline double abs_dangle(double &angle1, double &angle2){
+ double dphi;
+
+ dphi = fabs(angle1-angle2);
+ if (dphi>M_PI)
+ dphi = dphi-twopi;
+
+ return dphi;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/protocones.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/vicinity.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/vicinity.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/vicinity.cpp (revision 420)
@@ -0,0 +1,296 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: vicinity.cpp //
+// Description: source file for particle vicinity (Cvicinity class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "vicinity.h"
+#include <math.h>
+#include <algorithm>
+#include <iostream>
+
+namespace siscone{
+
+using namespace std;
+
+/*************************************************************
+ * Cvicinity_elm implementation *
+ * element in the vicinity of a parent. *
+ * class used to manage one points in the vicinity *
+ * of a parent point. *
+ *************************************************************/
+
+// ordering pointers to Cvicinity_elm
+//------------------------------------
+bool ve_less(Cvicinity_elm *ve1, Cvicinity_elm *ve2){
+ return ve1->angle < ve2->angle;
+}
+
+
+/*************************************************************
+ * Cvicinity implementation *
+ * list of element in the vicinity of a parent. *
+ * class used to manage the points which are in the vicinity *
+ * of a parent point. The construction of the list can be *
+ * made from a list of points or from a quadtree. *
+ *************************************************************/
+
+// default constructor
+//---------------------
+Cvicinity::Cvicinity(){
+ n_part = 0;
+
+ ve_list = NULL;
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ quadtree = NULL;
+#endif
+
+ parent = NULL;
+ VR2 = VR = 0.0;
+
+}
+
+// constructor with initialisation
+//---------------------------------
+Cvicinity::Cvicinity(vector<Cmomentum> &_particle_list){
+ parent = NULL;
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ quadtree = NULL;
+#endif
+ VR2 = VR = 0.0;
+
+ ve_list = NULL;
+ set_particle_list(_particle_list);
+}
+
+// default destructor
+//--------------------
+Cvicinity::~Cvicinity(){
+ if (ve_list!=NULL)
+ delete[] ve_list;
+
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ if (quadtree!=NULL)
+ delete quadtree;
+#endif
+}
+
+/*
+ * set the particle_list
+ * - particle_list list of particles (type Cmomentum)
+ * - n number of particles in the list
+ ************************************************************/
+void Cvicinity::set_particle_list(vector<Cmomentum> &_particle_list){
+ int i,j;
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ double eta_max=0.0;
+#endif
+
+ // if the particle list is not empty, destroy it !
+ if (ve_list!=NULL){
+ delete[] ve_list;
+ }
+ vicinity.clear();
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ if (quadtree!=NULL)
+ delete quadtree;
+#endif
+
+ // allocate memory array for particles
+ // Note: - we compute max for |eta|
+ // - we allocate indices to particles
+ n_part = 0;
+ plist.clear();
+ pincluded.clear();
+ for (i=0;i<(int) _particle_list.size();i++){
+ // if a particle is colinear with the beam (infinite rapidity)
+ // we do not take it into account
+ if (fabs(_particle_list[i].pz)!=_particle_list[i].E){
+ plist.push_back(_particle_list[i]);
+ pincluded.push_back(Cvicinity_inclusion()); // zero inclusion status
+
+ // the parent_index is handled in the split_merge because
+ // of our multiple-pass procedure.
+ // Hence, it is not required here any longer.
+ // plist[n_part].parent_index = i;
+ plist[n_part].index = n_part;
+
+ // make sure the reference is randomly created
+ plist[n_part].ref.randomize();
+
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ if (fabs(plist[n_part].eta)>eta_max) eta_max=fabs(plist[n_part].eta);
+#endif
+
+ n_part++;
+ }
+ }
+
+ // allocate quadtree and vicinity_elm list
+ // note: we set phi in [-pi:pi] as it is the natural range for atan2!
+ ve_list = new Cvicinity_elm[2*n_part];
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ eta_max+=0.1;
+ quadtree = new Cquadtree(0.0, 0.0, eta_max, M_PI);
+#endif
+
+ // append particle to the vicinity_elm list
+ j = 0;
+ for (i=0;i<n_part;i++){
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ quadtree->add(&plist[i]);
+#endif
+ ve_list[j].v = ve_list[j+1].v = &plist[i];
+ ve_list[j].is_inside = ve_list[j+1].is_inside = &(pincluded[i]);
+ j+=2;
+ }
+
+}
+
+
+/*
+ * build the vicinity list from a list of points.
+ * - _parent reference particle
+ * - _VR vicinity radius
+ ************************************************************/
+void Cvicinity::build(Cmomentum *_parent, double _VR){
+ int i;
+
+ // set parent and radius
+ parent = _parent;
+ VR = _VR;
+ VR2 = VR*VR;
+ R2 = 0.25*VR2;
+ R = 0.5*VR;
+ inv_R_EPS_COCIRC = 1.0 / R / EPSILON_COCIRCULAR;
+ inv_R_2EPS_COCIRC = 0.5 / R / EPSILON_COCIRCULAR;
+
+ // clear vicinity
+ vicinity.clear();
+
+ // init parent variables
+ pcx = parent->eta;
+ pcy = parent->phi;
+
+ // really browse the particle list
+ for (i=0;i<n_part;i++){
+ append_to_vicinity(&plist[i]);
+ }
+
+ // sort the vicinity
+ sort(vicinity.begin(), vicinity.end(), ve_less);
+
+ vicinity_size = vicinity.size();
+}
+
+
+/// strictly increasing function of the angle
+inline double sort_angle(double s, double c){
+ if (s==0) return (c>0) ? 0.0 : 2.0;
+ double t=c/s;
+ return (s>0) ? 1-t/(1+fabs(t)) : 3-t/(1+fabs(t));
+}
+
+
+/*
+ * append a particle to the 'vicinity' list after
+ * having computed the angular-ordering quantities
+ * - v vector to test
+ **********************************************************/
+void Cvicinity::append_to_vicinity(Cmomentum *v){
+ double dx, dy, d2;
+
+ // skip the particle itself)
+ if (v==parent)
+ return;
+
+ int i=2*(v->index);
+
+ // compute the distance of the i-th particle with the parent
+ dx = v->eta - pcx;
+ dy = v->phi - pcy;
+
+ // pay attention to the periodicity in phi !
+ if (dy>M_PI)
+ dy -= twopi;
+ else if (dy<-M_PI)
+ dy += twopi;
+
+ d2 = dx*dx+dy*dy;
+
+ // really check if the distance is less than VR
+ if (d2<VR2){
+ double s,c,tmp;
+
+ // compute the angles used for future ordering ...
+ // - build temporary variables used for the computation
+ //d = sqrt(d2);
+ tmp = sqrt(VR2/d2-1);
+
+ // first angle (+)
+ c = 0.5*(dx-dy*tmp); // cosine of (parent,child) pair w.r.t. horizontal
+ s = 0.5*(dy+dx*tmp); // sine of (parent,child) pair w.r.t. horizontal
+ ve_list[i].angle = sort_angle(s,c);
+ ve_list[i].eta = pcx+c;
+ ve_list[i].phi = phi_in_range(pcy+s);
+ ve_list[i].side = true;
+ ve_list[i].cocircular.clear();
+ vicinity.push_back(&(ve_list[i]));
+
+ // second angle (-)
+ c = 0.5*(dx+dy*tmp); // cosine of (parent,child) pair w.r.t. horizontal
+ s = 0.5*(dy-dx*tmp); // sine of (parent,child) pair w.r.t. horizontal
+ ve_list[i+1].angle = sort_angle(s,c);
+ ve_list[i+1].eta = pcx+c;
+ ve_list[i+1].phi = phi_in_range(pcy+s);
+ ve_list[i+1].side = false;
+ ve_list[i+1].cocircular.clear();
+ vicinity.push_back(&(ve_list[i+1]));
+
+ // now work out the cocircularity range for the two points (range
+ // of angle within which the points stay within a distance
+ // EPSILON_COCIRCULAR of circule
+ // P = parent; C = child; O = Origin (center of circle)
+ Ctwovect OP(pcx - ve_list[i+1].eta, phi_in_range(pcy-ve_list[i+1].phi));
+ Ctwovect OC(v->eta - ve_list[i+1].eta,
+ phi_in_range(v->phi-ve_list[i+1].phi));
+
+ // two sources of error are (GPS CCN29-19) epsilon/(R sin theta)
+ // and sqrt(2*epsilon/(R (1-cos theta))) and the way things work
+ // out, it is the _smaller_ of the two that is relevant [NB have
+ // changed definition of theta here relative to that used in
+ // CCN29] [NB2: write things so as to avoid zero denominators and
+ // to minimize the multiplications, divisions and above all sqrts
+ // -- that means that c & s are defined including a factor of VR2]
+ c = dot_product(OP,OC);
+ s = fabs(cross_product(OP,OC));
+ double inv_err1 = s * inv_R_EPS_COCIRC;
+ double inv_err2_sq = (R2-c) * inv_R_2EPS_COCIRC;
+ ve_list[i].cocircular_range = pow2(inv_err1) > inv_err2_sq ?
+ 1.0/inv_err1 :
+ sqrt(1.0/inv_err2_sq);
+ ve_list[i+1].cocircular_range = ve_list[i].cocircular_range;
+ }
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/vicinity.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/reference.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/reference.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/reference.cpp (revision 420)
@@ -0,0 +1,120 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: reference.cpp //
+// Description: source file for checkxor management (Creference class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "reference.h"
+#include "ranlux.h"
+#include <stdlib.h>
+
+namespace siscone{
+
+/*******************************************************
+ * Creference implementation *
+ * references used for checksums. *
+ * *
+ * This class implements some reference variable *
+ * that can be used for checksums. Those checksums *
+ * are useful to disentengle between contents of two *
+ * cones without looking into their explicit particle *
+ * contents. *
+ *******************************************************/
+
+// default constructor
+//////////////////////
+Creference::Creference(){
+ ref[0] = ref[1] = ref[2] = 0;
+}
+
+ //static unsigned int reference_bit = 1;
+
+// create a random reference
+//---------------------------
+void Creference::randomize(){
+// ref[0] = reference_bit;
+// ref[1] = 0;
+// ref[2] = 0;
+// reference_bit <<= 1;
+
+ unsigned int r1 = ranlux_get();
+ unsigned int r2 = ranlux_get();
+ unsigned int r3 = ranlux_get();
+ unsigned int r4 = ranlux_get();
+ // since ranlux only produces 24 bits, take r4 and add 8 bits
+ // from it to each of r1,r2, r3 to get 3*32 bits.
+ ref[0] = r1+((r4 & 0x00ff0000) << 8);
+ ref[1] = r2+((r4 & 0x0000ff00) << 16);
+ ref[2] = r3+((r4 & 0x000000ff) << 24);
+
+ if (is_empty()) randomize();
+}
+
+// test emptyness
+//----------------
+bool Creference::is_empty(){
+ return (ref[0]==0) && (ref[1]==0) && (ref[2]==0);
+}
+
+// test non-emptyness
+//--------------------
+bool Creference::not_empty(){
+ return (ref[0]!=0) || (ref[1]!=0) || (ref[2]!=0);
+}
+
+// assignment of reference
+//-------------------------
+Creference& Creference::operator = (const Creference &r){
+ ref[0] = r.ref[0];
+ ref[1] = r.ref[1];
+ ref[2] = r.ref[2];
+ return *this;
+}
+
+// addition of reference
+//-----------------------
+Creference Creference::operator + (const Creference &r){
+ Creference tmp = *this;
+ return tmp+=r;
+}
+
+// incrementation of reference
+//-----------------------------
+Creference& Creference::operator += (const Creference &r){
+ ref[0] ^= r.ref[0];
+ ref[1] ^= r.ref[1];
+ ref[2] ^= r.ref[2];
+ return *this;
+}
+
+// decrementation of reference
+//-----------------------------
+Creference& Creference::operator -= (const Creference &r){
+ ref[0] ^= r.ref[0];
+ ref[1] ^= r.ref[1];
+ ref[2] ^= r.ref[2];
+ return *this;
+}
+
+}
+
Property changes on: tags/siscone-3.0.4/siscone/reference.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/protocones.h
===================================================================
--- tags/siscone-3.0.4/siscone/protocones.h (revision 0)
+++ tags/siscone-3.0.4/siscone/protocones.h (revision 420)
@@ -0,0 +1,271 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: protocones.h //
+// Description: header file for stable cones determination (Cstable_cones) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __PROTOCONES_H__
+#define __PROTOCONES_H__
+
+#include "momentum.h"
+#include "vicinity.h"
+#include <stdio.h>
+#include <vector>
+#include <list>
+#include "hash.h"
+
+#include "defines.h"
+
+namespace siscone{
+
+/**
+ * \class Cborder_store
+ *
+ * class for storing a border momentum (in context of co-circularity
+ * checks).
+
+ * This class essentially calculates angle of border point w.r.t.
+ * circle center (eta & phi), and provides a store of information
+ * about whether we are currently including this point in the
+ * candidate
+ */
+class Cborder_store{
+public:
+ /// default ctor
+ Cborder_store(Cmomentum * momentum, double centre_eta, double centre_phi) :
+ mom(momentum), is_in(false) {
+ angle = atan2(mom->phi - centre_phi, mom->eta - centre_eta);
+ }
+
+ Cmomentum * mom; ///< particle momentum
+ double angle; ///< angle w.r.t. circle centre
+ bool is_in; ///< inclusion status of the particle
+};
+
+
+/// allows easy sorting of Cborder_store objects (which need to be
+/// ordered in angle).
+inline bool operator<(const Cborder_store & a, const Cborder_store & b) {
+ return a.angle < b.angle;
+}
+
+
+/**
+ * \class Cstable_cones
+ * \brief Computes the list of stable comes from a particle list.
+ *
+ * This class does the first fundamental task of te cone algorithm:
+ * it is used to compute the list of stable cones given a list
+ * of particles.
+ */
+class Cstable_cones : public Cvicinity{
+ public:
+ /// default ctor
+ Cstable_cones();
+
+ /// ctor with initialisation (sse init for details)
+ Cstable_cones(std::vector<Cmomentum> &_particle_list);
+
+ /// default dtor
+ ~Cstable_cones();
+
+ /**
+ * initialisation
+ * \param _particle_list list of particles
+ */
+ void init(std::vector<Cmomentum> &_particle_list);
+
+ /**
+ * compute stable cones.
+ * This function really does the job i.e. computes
+ * the list of stable cones (in a seedless way)
+ * \param _radius radius of the cones
+ * \return The number of stable cones found is returned
+ */
+ int get_stable_cones(double _radius);
+
+ /// list of stable cones
+ std::vector<Cmomentum> protocones;
+
+ /// list of candidates
+ hash_cones *hc;
+
+ /// total number of tested cones
+ int nb_tot;
+#ifdef DEBUG_STABLE_CONES
+ int nb_hash_cones, nb_hash_occupied;
+#endif
+
+ protected:
+ /// cone radius
+ double R;
+
+ /// cone radius SQUARED
+ double R2;
+
+ private:
+ /// cone with a given particle as parent
+ /// this reduction to a single vector assumes we trust the checksums
+ Cmomentum cone;
+
+ /// child particle, taken in the 'vicinity' list
+ Cmomentum *child;
+
+ /// centre of the tested cone
+ Cvicinity_elm *centre;
+
+ /// index in the particle list;
+ unsigned int centre_idx;
+
+ /// first cone used in the vicinity list
+ unsigned int first_cone;
+
+ /**
+ * initialise the cone.
+ * We take the first particle in the angular ordering to compute this one
+ * \return 0 on success, 1 on error
+ */
+ int init_cone();
+
+ /**
+ * test cones.
+ * We check if the cone(s) build with the present parent and child
+ * are stable
+ * \return 0 on success 1 on error
+ */
+ int test_cone();
+
+ /**
+ * update the cone
+ * go to the next child for that parent and update 'cone' appropriately
+ * \return 0 if update candidate found, 1 otherwise
+ */
+ int update_cone();
+
+ /*
+ * run through the vicinity of the current parent and for each child
+ * indicate which members are cocircular...
+ */
+ void prepare_cocircular_lists();
+
+ /**
+ * check if we are in a situation of cocircularity.
+ * if it is the case, update and test in the corresponding way
+ * \return 'false' if no cocircularity detected, 'true' otherwise
+ * Note that if cocircularity is detected, we need to
+ * recall 'update' from 'update' !!!
+ */
+ bool cocircular_check();
+
+ /**
+ * Routine for testing cocircular configurations in p^3 time,
+ * rather than 2^p time;
+ */
+ void test_cone_cocircular(Cmomentum & borderless_cone,
+ std::list<Cmomentum *> & border_list);
+
+ /**
+ * carry out the computations needed for the stability check of the
+ * candidate, using the border_vect to indicate which particles
+ * should / should not be in the stable cone; if the cone is stable
+ * insert it into the hash.
+ */
+ void test_stability(Cmomentum & candidate,
+ const std::vector<Cborder_store> & border_vect);
+
+ /**
+ * compute the cone contents by going once around the full set of
+ * circles and tracking the entry/exit status each time -- this sets
+ * up the inclusion information, which can then be directly used to
+ * calculate the cone momentum.
+ */
+ void compute_cone_contents();
+
+ /**
+ * compute the cone momentum from particle list.
+ * in this version, we use the 'pincluded' information
+ * from the Cviinity class
+ */
+ void recompute_cone_contents();
+
+ /*
+ * if we have gone beyond the acceptable threshold of change, compute
+ * the cone momentum from particle list. in this version, we use the
+ * 'pincluded' information from the Cvicinity class, but we don't
+ * change the member cone, only the locally supplied one
+ */
+ void recompute_cone_contents_if_needed(Cmomentum & this_cone, double & this_dpt);
+
+ /**
+ * compute stability of all enumerated candidates.
+ * For all candidate cones which are stable w.r.t. their border particles,
+ * pass the last test: stability with quadtree intersection
+ */
+ int proceed_with_stability();
+
+ /*
+ * circle intersection.
+ * computes the intersection with a circle of given centre and radius.
+ * The output takes the form of a checkxor of the intersection's particles
+ * - cx circle centre x coordinate
+ * - cy circle centre y coordinate
+ * return the checkxor for the intersection
+ ******************************************************************/
+ Creference circle_intersect(double cx, double cy);
+
+ /// present candidate cone
+ Cmomentum cone_candidate;
+
+ /// in case of co-circular points, vector for them
+ std::vector<Cmomentum*> child_list;
+
+ /// list of cocircular enclusures already studied
+ /// first element if cone contents, second is cone border
+ std::vector< std::pair<Creference,Creference> > multiple_centre_done;
+
+ // information for updating cone contents to avoid rounding errors
+ double dpt; ///< sums of Delta P_t
+
+ /**
+ * test if a particle is inside a cone of given centre.
+ * check if the particle of coordinates 'v' is inside the circle of radius R
+ * centered at 'centre'.
+ * \param centre centre of the circle
+ * \param v particle to test
+ * \return true if inside, false if outside
+ */
+ inline bool is_inside(Cmomentum *centre, Cmomentum *v);
+};
+
+/*
+ * compute the absolute value of the difference between 2 angles.
+ * We take care of the 2pi periodicity
+ * \param angle1 first angle
+ * \param angle2 second angle
+ * \return the absolute value of the difference between the angles
+ *****************************************************************/
+inline double abs_dangle(double &angle1, double &angle2);
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/protocones.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/momentum.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/momentum.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/momentum.cpp (revision 420)
@@ -0,0 +1,161 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: momentum.cpp //
+// Description: source file for 4-momentum class Cmomentum //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "momentum.h"
+#include <math.h>
+#include <stdlib.h>
+
+namespace siscone{
+
+/*************************************************************************
+ * class Cmomentum *
+ * This class contains the information for particle or group of *
+ * particles management. *
+ * It includes all Lorentz properties as well as tools for summing them. *
+ *************************************************************************/
+
+// default ctor
+//--------------
+Cmomentum::Cmomentum(){
+ eta = 0.0;
+ phi = 0.0;
+ px = py = pz = E = 0.0;
+ ref = Creference();
+ index = -1;
+}
+
+// ctor with initialisation
+//--------------------------
+Cmomentum::Cmomentum(double _px, double _py, double _pz, double _E){
+ px = _px;
+ py = _py;
+ pz = _pz;
+ E = _E;
+
+ // compute eta and phi
+ build_etaphi();
+ ref = Creference();
+}
+
+// ctor with detailed initialisation
+//-----------------------------------
+Cmomentum::Cmomentum(double _eta, double _phi, Creference _ref){
+ eta = _eta;
+ phi = _phi;
+
+ ref = _ref;
+}
+
+// default dtor
+//--------------
+Cmomentum::~Cmomentum(){
+
+}
+
+// assignment of vectors
+//-----------------------
+Cmomentum& Cmomentum::operator = (const Cmomentum &v){
+ px = v.px;
+ py = v.py;
+ pz = v.pz;
+ E = v.E;
+
+ eta = v.eta;
+ phi = v.phi;
+
+ ref = v.ref;
+ return *this;
+}
+
+// addition of vectors
+// !!! WARNING !!! no updating of eta and phi !!!
+//------------------------------------------------
+const Cmomentum Cmomentum::operator + (const Cmomentum &v){
+ Cmomentum tmp = *this;
+ return tmp+=v;
+}
+
+// incrementation of vectors
+// !!! WARNING !!! no updating of eta and phi !!!
+//------------------------------------------------
+Cmomentum& Cmomentum::operator += (const Cmomentum &v){
+ px+=v.px;
+ py+=v.py;
+ pz+=v.pz;
+ E +=v.E;
+
+ ref+=v.ref;
+
+ return *this;
+}
+
+// incrementation of vectors
+// !!! WARNING !!! no updating of eta and phi !!!
+//------------------------------------------------
+Cmomentum& Cmomentum::operator -= (const Cmomentum &v){
+ px-=v.px;
+ py-=v.py;
+ pz-=v.pz;
+ E -=v.E;
+
+ ref-=v.ref;
+ return *this;
+}
+
+// build eta-phi from 4-momentum info
+// !!! WARNING !!!
+// !!! computing eta and phi is time-consuming !!!
+// !!! use this whenever you need eta or phi !!!
+// !!! automatically called for single-particle !!!
+//--------------------------------------------------
+void Cmomentum::build_etaphi(){
+ // note: the factor n (ref.nb) cancels in all expressions !!
+ eta = 0.5*log((E+pz)/(E-pz));
+ phi = atan2(py,px);
+}
+
+
+// ordering of two vectors
+// the default ordering is w.r.t. their references
+//-------------------------------------------------
+bool operator < (const Cmomentum &v1, const Cmomentum &v2){
+ return v1.ref < v2.ref;
+}
+
+// ordering of vectors in eta (e.g. used in collinear tests)
+//-----------------------------------------------------------
+bool momentum_eta_less(const Cmomentum &v1, const Cmomentum &v2){
+ return v1.eta < v2.eta;
+}
+
+// ordering of vectors in pt
+//---------------------------
+bool momentum_pt_less(const Cmomentum &v1, const Cmomentum &v2){
+ return v1.perp2() < v2.perp2();
+}
+
+}
+
Property changes on: tags/siscone-3.0.4/siscone/momentum.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/vicinity.h
===================================================================
--- tags/siscone-3.0.4/siscone/vicinity.h (revision 0)
+++ tags/siscone-3.0.4/siscone/vicinity.h (revision 420)
@@ -0,0 +1,156 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: vicinity.h //
+// Description: header file for particle vicinity (Cvicinity class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __VICINITY_H__
+#define __VICINITY_H__
+
+#include <vector>
+#include <list>
+#include "momentum.h"
+#include "defines.h"
+#include "quadtree.h"
+
+namespace siscone{
+
+
+
+/**
+ * \class Cvicinity_inclusion
+ * \brief a class to keep track of inclusion status in cone and in cocircular region
+ * while using minimal resources
+ */
+class Cvicinity_inclusion {
+public:
+ /// default ctor
+ Cvicinity_inclusion() : cone(false), cocirc(false) {}
+
+ bool cone; ///< flag for particle inclusion in the cone
+ bool cocirc; ///< flag for particle inclusion in the border
+};
+
+
+/**
+ * \class Cvicinity_elm
+ * \brief element in the vicinity of a parent.
+ *
+ * class used to manage one points in the vicinity
+ * of a parent point.
+ */
+class Cvicinity_elm{
+ public:
+ /// pointer to the second borderline particle
+ Cmomentum *v;
+
+ /// variable to tell if the particle is inside or outside the cone
+ Cvicinity_inclusion *is_inside;
+
+ // centre variables
+ double eta; ///< eta coordinate of the center
+ double phi; ///< phi coordinate of the center
+ double angle; ///< angle with parent
+ bool side; ///< true if angle on the positive side, false otherwise
+ double cocircular_range; ///< amount by which the angle can be varied while
+ ///< maintaining this point within co-circularity margin
+
+ /// list of elements co-circular with this one
+ /// NB: empty list uses less mem than vector
+ std::list<Cvicinity_elm * > cocircular;
+};
+
+/// ordering pointers to Cvicinity_elm
+bool ve_less(Cvicinity_elm *ve1, Cvicinity_elm *ve2);
+
+
+/**
+ * \class Cvicinity
+ * \brief list of element in the vicinity of a parent.
+ *
+ * class used to manage the points which are in the vicinity
+ * of a parent point.
+ */
+class Cvicinity{
+ public:
+ /// default constructor
+ Cvicinity();
+
+ /// constructor with initialisation (see set_particle_list)
+ Cvicinity(std::vector<Cmomentum> &_particle_list);
+
+ /// default destructor
+ ~Cvicinity();
+
+ /**
+ * set the particle_list
+ * \param _particle_list list of particles (type Cmomentum)
+ */
+ void set_particle_list(std::vector<Cmomentum> &_particle_list);
+
+ /**
+ * build the vicinity list from the list of points.
+ * \param _parent reference particle
+ * \param _VR vicinity radius
+ */
+ void build(Cmomentum *_parent, double _VR);
+
+ // cone kinematical information
+ Cmomentum *parent; ///< parent vector
+ double VR; ///< radius of the vicinity
+ double VR2; ///< squared radius of the vicinity
+ double R; ///< normal radius
+ double R2; ///< squared normal radius
+ double inv_R_EPS_COCIRC; ///< R / EPSILON_COCIRCULAR
+ double inv_R_2EPS_COCIRC; ///< R / (2*EPSILON_COCIRCULAR)
+
+ // particle list information
+ int n_part; ///< number of particles
+ std::vector<Cmomentum> plist; ///< the list of particles
+ std::vector<Cvicinity_inclusion> pincluded; ///< the inclusion state of particles
+ Cvicinity_elm *ve_list; ///< list of vicinity elements built from particle list (size=2*n)
+#ifdef USE_QUADTREE_FOR_STABILITY_TEST
+ Cquadtree *quadtree; ///< quadtree used for final stability tests
+#endif
+
+ // vicinity information
+ std::vector<Cvicinity_elm*> vicinity; ///< list of points in parent's vicinity
+ unsigned int vicinity_size; ///< number of elements in vicinity
+
+ protected:
+ /**
+ * append a particle to the 'vicinity' list after
+ * having tested it and computed the angular-ordering quantities
+ * \param v vector to test
+ */
+ void append_to_vicinity(Cmomentum *v);
+
+ // internal variables
+ double pcx; ///< parent centre (eta)
+ double pcy; ///< parent centre (phi)
+};
+
+}
+
+#endif
Property changes on: tags/siscone-3.0.4/siscone/vicinity.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/siscone.cpp
===================================================================
--- tags/siscone-3.0.4/siscone/siscone.cpp (revision 0)
+++ tags/siscone-3.0.4/siscone/siscone.cpp (revision 420)
@@ -0,0 +1,294 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: siscone.cpp //
+// Description: source file for the main SISCone class //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "config.h"
+#include "ranlux.h"
+#include "momentum.h"
+#include "defines.h"
+#include "siscone.h"
+#include "siscone_error.h"
+#include <iostream>
+#include <sstream>
+#include <iomanip>
+
+namespace siscone{
+using namespace std;
+
+/***************************************************************
+ * Csiscone implementation *
+ * final class: gather everything to compute the jet contents. *
+ * *
+ * This is the class user should use. *
+ * It computes the jet contents of a list of particles *
+ * given a cone radius and a threshold for splitting/merging. *
+ ***************************************************************/
+
+// default ctor
+//--------------
+Csiscone::Csiscone(){
+ rerun_allowed = false;
+}
+
+// default dtor
+//--------------
+Csiscone::~Csiscone(){
+ rerun_allowed = false;
+}
+
+bool Csiscone::init_done=false;
+std::ostream* Csiscone::_banner_ostr = &cout;
+
+/*
+ * compute the jets from a given particle set doing multiple passes
+ * such pass N looks for jets among all particles not put into jets
+ * during previous passes.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _f shared energy threshold for splitting&merging
+ * - _n_pass_max maximum number of runs
+ * - _ptmin minimum pT of the protojets
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: using pt leads to IR unsafety for some events with momentum
+ * conservation. So we strongly advise not to change the default
+ * value.
+ * return the number of jets found.
+ **********************************************************************/
+int Csiscone::compute_jets(vector<Cmomentum> &_particles, double _radius, double _f,
+ int _n_pass_max, double _ptmin,
+ Esplit_merge_scale _split_merge_scale){
+ _initialise_if_needed();
+
+ // run some general safety tests (NB: f will be checked in split-merge)
+ if (_radius <= 0.0 || _radius >= 0.5*M_PI) {
+ ostringstream message;
+ message << "Illegal value for cone radius, R = " << _radius
+ << " (legal values are 0<R<pi/2)";
+ throw Csiscone_error(message.str());
+ }
+
+
+
+ ptcomparison.split_merge_scale = _split_merge_scale;
+ partial_clear(); // make sure some things are initialised properly
+
+ // init the split_merge algorithm with the initial list of particles
+ // this initialises particle list p_left of remaining particles to deal with
+ init_particles(_particles);
+
+ bool finished = false;
+
+ rerun_allowed = false;
+ protocones_list.clear();
+
+#ifdef DEBUG_STABLE_CONES
+ nb_hash_cones_total = 0;
+ nb_hash_occupied_total = 0;
+#endif
+
+ do{
+ // initialise stable_cone finder
+ // here we use the list of remaining particles
+ // AFTER COLLINEAR CLUSTERING !!!!!!
+ Cstable_cones::init(p_uncol_hard);
+
+ // get stable cones
+ if (get_stable_cones(_radius)){
+ // we have some new protocones; add them to candidates
+ // Note that add_protocones has to be called first
+ // if we want the 4-vect components to be available
+ // on top of eta and phi.
+ add_protocones(&protocones, R2, _ptmin);
+ protocones_list.push_back(protocones);
+#ifdef DEBUG_STABLE_CONES
+ nb_hash_cones_total += nb_hash_cones;
+ nb_hash_occupied_total += nb_hash_occupied;
+#endif
+ } else {
+ // no new protocone: leave
+ finished=true;
+ }
+
+ _n_pass_max--;
+ } while ((!finished) && (n_left>0) && (_n_pass_max!=0));
+
+ rerun_allowed = true;
+
+ // split & merge
+ return perform(_f, _ptmin);
+}
+
+
+/*
+ * compute the jets from a given particle set doing multiple passes
+ * such pass N looks for jets among all particles not put into jets
+ * during previous passes.
+ * - _particles list of particles
+ * - _radius cone radius
+ * - _n_pass_max maximum number of runs
+ * - _ptmin minimum pT of the protojets
+ * - _ordering_scale the ordering scale to decide which stable
+ * cone is removed
+ * return the number of jets found.
+ **********************************************************************/
+int Csiscone::compute_jets_progressive_removal(vector<Cmomentum> &_particles, double _radius,
+ int _n_pass_max, double _ptmin,
+ Esplit_merge_scale _ordering_scale){
+ _initialise_if_needed();
+
+ // run some general safety tests (NB: f will be checked in split-merge)
+ if (_radius <= 0.0 || _radius >= 0.5*M_PI) {
+ ostringstream message;
+ message << "Illegal value for cone radius, R = " << _radius
+ << " (legal values are 0<R<pi/2)";
+ throw Csiscone_error(message.str());
+ }
+
+ ptcomparison.split_merge_scale = _ordering_scale;
+ partial_clear(); // make sure some things are initialised properly
+
+ // init the split_merge algorithm with the initial list of particles
+ // this initialises particle list p_left of remaining particles to deal with
+ //
+ // this stores the "processed" particles in p_uncol_hard
+ init_particles(_particles);
+ jets.clear();
+
+ bool unclustered_left;
+ rerun_allowed = false;
+ protocones_list.clear();
+
+ do{
+ //cout << n_left << " particle left" << endl;
+
+ // initialise stable_cone finder
+ // here we use the list of remaining particles
+ // AFTER COLLINEAR CLUSTERING !!!!!!
+ Cstable_cones::init(p_uncol_hard);
+
+ // get stable cones (stored in 'protocones')
+ unclustered_left = get_stable_cones(_radius);
+
+ // add the hardest stable cone to the list of jets
+ if (add_hardest_protocone_to_jets(&protocones, R2, _ptmin)) break;
+
+ _n_pass_max--;
+ } while ((unclustered_left) && (n_left>0) && (_n_pass_max!=0));
+
+ // split & merge
+ return jets.size();
+}
+
+
+/*
+ * recompute the jets with a different overlap parameter.
+ * we use the same particles and R as in the preceeding call.
+ * - _f shared energy threshold for splitting&merging
+ * - _ptmin minimum pT of the protojets
+ * - _split_merge_scale the scale choice for the split-merge procedure
+ * NOTE: using pt leads to IR unsafety for some events with momentum
+ * conservation. So we strongly advise not to change the default
+ * value.
+ * return the number of jets found, -1 if recomputation not allowed.
+ ********************************************************************/
+int Csiscone::recompute_jets(double _f, double _ptmin,
+ Esplit_merge_scale _split_merge_scale){
+ if (!rerun_allowed)
+ return -1;
+
+ ptcomparison.split_merge_scale = _split_merge_scale;
+
+ // restore particle list
+ partial_clear();
+ init_pleft();
+
+ // initialise split/merge algorithm
+ unsigned int i;
+ for (i=0;i<protocones_list.size();i++)
+ add_protocones(&(protocones_list[i]), R2, _ptmin);
+
+ // split & merge
+ return perform(_f, _ptmin);
+}
+
+// ensure things are initialised
+void Csiscone::_initialise_if_needed(){
+ // initialise random number generator
+ if (init_done) return;
+
+ // initialise random number generator
+ ranlux_init();
+
+ // do not do this again
+ init_done=true;
+
+ // print the banner
+ if (_banner_ostr != 0){
+ ios::fmtflags flags_to_restore(_banner_ostr->flags());
+
+ (*_banner_ostr) << "#ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo" << endl;
+ (*_banner_ostr) << "# SISCone version " << setw(28) << left << siscone_version() << "o" << endl;
+ (*_banner_ostr) << "# http://projects.hepforge.org/siscone o" << endl;
+ (*_banner_ostr) << "# o" << endl;
+ (*_banner_ostr) << "# This is SISCone: the Seedless Infrared Safe Cone Jet Algorithm o" << endl;
+ (*_banner_ostr) << "# SISCone was written by Gavin Salam and Gregory Soyez o" << endl;
+ (*_banner_ostr) << "# It is released under the terms of the GNU General Public License o" << endl;
+ (*_banner_ostr) << "# o" << endl;
+ (*_banner_ostr) << "# A description of the algorithm is available in the publication o" << endl;
+ (*_banner_ostr) << "# JHEP 05 (2007) 086 [arXiv:0704.0292 (hep-ph)]. o" << endl;
+ (*_banner_ostr) << "# Please cite it if you use SISCone. o" << endl;
+ (*_banner_ostr) << "#ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo" << endl;
+ (*_banner_ostr) << endl;
+
+ _banner_ostr->flush();
+ _banner_ostr->flags(flags_to_restore);
+ }
+}
+
+// finally, a bunch of functions to access to
+// basic information (package name, version)
+//---------------------------------------------
+
+/*
+ * return SISCone package name.
+ * This is nothing but "SISCone", it is a replacement to the
+ * SISCONE_PACKAGE_NAME string defined in config.h and which is not
+ * guaranteed to be public.
+ * return the SISCone name as a string
+ */
+string siscone_package_name(){
+ return SISCONE_PACKAGE_NAME;
+}
+
+/*
+ * return SISCone version number.
+ * return a string of the form "X.Y.Z" with possible additional tag
+ * (alpha, beta, devel) to mention stability status
+ */
+string siscone_version(){
+ return SISCONE_VERSION;
+}
+
+}
Property changes on: tags/siscone-3.0.4/siscone/siscone.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone/reference.h
===================================================================
--- tags/siscone-3.0.4/siscone/reference.h (revision 0)
+++ tags/siscone-3.0.4/siscone/reference.h (revision 420)
@@ -0,0 +1,111 @@
+// -*- C++ -*-
+///////////////////////////////////////////////////////////////////////////////
+// File: reference.h //
+// Description: header file for checkxor management (Creference class) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __REFERENCE_H__
+#define __REFERENCE_H__
+
+namespace siscone{
+
+/**
+ * \class Creference
+ * \brief references used for checksums.
+ *
+ * This class implements some reference variable
+ * that can be used for checksums. Those checksums
+ * are useful to disentengle between contents of two
+ * cones without looking into their explicit particle
+ * contents.
+ */
+class Creference{
+ public:
+ /// default constructor
+ Creference();
+
+ /// create a random reference
+ void randomize();
+
+ /// test emptyness
+ bool is_empty();
+
+ /// test non-emptyness
+ bool not_empty();
+
+ /// assignment of reference
+ Creference& operator = (const Creference &r);
+
+ /// addition of reference
+ Creference operator + (const Creference &r);
+
+ /// incrementation of reference
+ Creference& operator += (const Creference &r);
+
+ /// decrementation of reference
+ Creference& operator -= (const Creference &r);
+
+ /// accessing the reference
+ inline unsigned int operator[] (int i) {return ref[i];}
+
+ unsigned int ref[3]; ///< actual data for the reference
+};
+
+/// addition of two references
+Creference operator + (Creference &r1, Creference &r2);
+
+/// equality test of two references
+bool operator == (const Creference &r1, const Creference &r2);
+
+/// difference test of two references
+bool operator != (const Creference &r1, const Creference &r2);
+
+/// ordering of two references
+bool operator < (const Creference &r1, const Creference &r2);
+
+
+//=============== inline material ================
+
+// equality test for two references
+//----------------------------------
+inline bool operator == (const Creference &r1, const Creference &r2){
+ return (r1.ref[0]==r2.ref[0]) && (r1.ref[1]==r2.ref[1]) && (r1.ref[2]==r2.ref[2]);
+}
+
+// difference test for two references
+//----------------------------------
+inline bool operator != (const Creference &r1, const Creference &r2){
+ return (r1.ref[0]!=r2.ref[0]) || (r1.ref[1]!=r2.ref[1]) || (r1.ref[2]!=r2.ref[2]);
+}
+
+// difference test for two references
+//----------------------------------
+inline bool operator < (const Creference &r1, const Creference &r2){
+ return (r1.ref[0]<r2.ref[0]) || ((r1.ref[0]==r2.ref[0]) &&
+ ((r1.ref[1]<r2.ref[1]) || ((r1.ref[1]==r2.ref[1]) && (r1.ref[2]<r2.ref[2]))
+ ));
+}
+
+}
+#endif
Property changes on: tags/siscone-3.0.4/siscone/reference.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/siscone
===================================================================
--- tags/siscone-3.0.4/siscone (revision 419)
+++ tags/siscone-3.0.4/siscone (revision 420)
Property changes on: tags/siscone-3.0.4/siscone
___________________________________________________________________
Added: svn:ignore
## -0,0 +1,13 ##
+libsiscone.a
+
+Makefile.in
+
+.deps
+
+Makefile
+
+stamp-h1
+
+config.h
+
+.libs
Index: tags/siscone-3.0.4/makefile.static
===================================================================
--- tags/siscone-3.0.4/makefile.static (revision 0)
+++ tags/siscone-3.0.4/makefile.static (revision 420)
@@ -0,0 +1,34 @@
+SUBDIRS = siscone examples
+DISTFILES = AUTHORS BUGS COPYING ChangeLog INSTALL NEWS README TODO Doxyfile \
+makefile.static siscone/makefile.static examples/makefile.static \
+configure.ac Makefile.am siscone/Makefile.am examples/Makefile.am \
+config.h.in siscone/*.cpp siscone/*.h \
+examples/events/*.dat examples/mem_check examples/*.h examples/*.cpp
+VERSION = `head -1 configure.ac | sed -e"s/AC_INIT(\[SISCone\], \[//;s/\])//"`
+TARDIR = siscone-$(VERSION)
+
+all: config $(SUBDIRS)
+
+.PHONY: clean $(SUBDIRS)
+
+clean: $(SUBDIRS)
+ rm *~
+
+depend: $(SUBDIRS)
+
+config:
+ @echo "Creating the configuration file"
+ sed -e "s/#undef PACKAGE_NAME/#define PACKAGE_NAME \"SISCone\"/;s/#undef VERSION/#define VERSION \"$(VERSION)\"/" config.h.in > siscone/config.h
+
+siscone:
+ @cd siscone && $(MAKE) -f makefile.static $(MAKECMDGOALS)
+
+examples:
+ @cd examples && $(MAKE) -f makefile.static $(MAKECMDGOALS)
+
+dist:
+ mkdir $(TARDIR)
+ cp -R -t $(TARDIR) --parents $(DISTFILES)
+ tar -czf $(TARDIR)_noautoconf.tar.gz $(TARDIR)
+# chmod a-w $(TARDIR).tar.gz
+ rm -Rf $(TARDIR)
Index: tags/siscone-3.0.4/configure.ac
===================================================================
--- tags/siscone-3.0.4/configure.ac (revision 0)
+++ tags/siscone-3.0.4/configure.ac (revision 420)
@@ -0,0 +1,98 @@
+AC_INIT([SISCone], [3.0.4])
+AC_CONFIG_SRCDIR([siscone/siscone.cpp])
+AM_INIT_AUTOMAKE
+
+dnl (un)comment the following lines if you want to use autoheader
+dnl and also (un)comment the call to autoheader in autogen.sh
+dnl
+dnl Notes:
+dnl - the first macro needs to place the files in the correct
+dnl dir in order to have the correct -I options for the remote build
+dnl - see Makefile.am for distcleaning AX_PREFIX_CONFIG_H leftovers
+AC_CONFIG_HEADERS(siscone/config_raw.h:config.h.in)
+AX_PREFIX_CONFIG_H(siscone/config.h,SISCONE,siscone/config_raw.h)
+
+dnl and also uncomment the call to autoheader in autogen.sh
+
+dnl check autoconf version
+AC_PREREQ(2.63)
+
+dnl check basic types
+AC_CHECK_TYPE(int)
+AC_CHECK_TYPE(long)
+
+dnl set default compilation and link flags
+dnl those can be changed at configure time so we don't use AM_CXXFLAGS here
+test "x${CXXFLAGS+yes}" = xyes || CXXFLAGS="-O3 -Wall -ffast-math"
+dnl CXXFLAGS=" -Wall -O3 -ffast-math "
+
+dnl check useful programs
+AC_PROG_CXX
+AC_PROG_INSTALL
+AC_PROG_LN_S
+AC_PROG_MAKE_SET
+
+dnl check standard C headers
+AC_STDC_HEADERS
+
+dnl set the default destination directory
+AC_PREFIX_DEFAULT(/usr/local)
+
+dnl if the debug flag is set, build with -g
+dnl default is "yes"
+AC_ARG_ENABLE(debug,
+ [ --enable-debug Turn on debug compiler information],
+ [ENABLE_DEBUG_FLAG="$enableval"],
+ [ENABLE_DEBUG_FLAG="yes"])
+if [[ "x$ENABLE_DEBUG_FLAG" == "xyes" ]] ; then
+ CXXFLAGS=${CXXFLAGS}" -g "
+fi
+
+dnl uncomment the next line not to build the shared lib by default
+dnl AM_DISABLE_SHARED
+
+dnl-----------------
+dnl check libraries
+dnl ----------------
+
+dnl math lib
+AC_CHECK_LIB(m, cos)
+dnl already included into LIBS by the previous check
+dnl AM_LDFLAGS=" -lm "
+
+dnl if the debug flags are on, check if we can also use
+dnl some profiling tools
+dnl COMMENTED: Pass LDFLAGS to configure instead
+dnl if [[ "x$ENABLE_DEBUG_FLAG" == "xyes" ]] ; then
+dnl AC_CHECK_LIB(profiler, google_initializer_module_profiler)
+dnl AC_CHECK_LIB(pthread, pthread_create)
+dnl AC_CHECK_LIB(tcmalloc, malloc)
+dnl fi
+
+dnl enable libtool
+AC_PROG_LIBTOOL
+
+dnl chceck if auto_ptr is deprecated
+dnl if yes, see if unique_ptr is supported
+AC_MSG_CHECKING([[if $CXX $CXXFLAGS considers atd::auto_ptr as deprecated]])
+AC_LANG_PUSH(C++)
+save_CXXFLAGS="$CXXFLAGS"
+CXXFLAGS="$CXXFLAGS -Werror=deprecated-declarations"
+AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[#include <memory>]],[[int *a= new int(1); std::auto_ptr<int> b; b.reset(a);]])],
+ [ac_compilation_deprecated="no"],[ac_compilation_deprecated="yes"])
+AC_MSG_RESULT([$ac_compilation_deprecated])
+if [[ "$ac_compilation_deprecated" == "yes" ]] ; then
+ AC_MSG_CHECKING([[if $CXX $CXXFLAGS supports atd::unique_ptr]])
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[#include <memory>]],[[int *a= new int(1); std::unique_ptr<int> b; b.reset(a);]])],
+ [ac_supports_unique_ptr="yes"],[as_supports_unique_ptr="no"])
+ if [[ "$ac_supports_unique_ptr" == "yes" ]] ; then
+ AC_DEFINE(USES_UNIQUE_PTR_AS_AUTO_PTR, [], [use unique_ptr instead of auto_ptr])
+ fi
+ AC_MSG_RESULT([$ac_supports_unique_ptr])
+
+fi
+CXXFLAGS="$save_CXXFLAGS"
+AC_LANG_POP(C++)
+
+
+AC_OUTPUT( Makefile siscone/Makefile siscone/spherical/Makefile examples/Makefile examples/events/Makefile )
Index: tags/siscone-3.0.4/.gitignore
===================================================================
--- tags/siscone-3.0.4/.gitignore (revision 0)
+++ tags/siscone-3.0.4/.gitignore (revision 420)
@@ -0,0 +1,16 @@
+/*.tar.gz
+/Makefile.in
+/config.guess
+/config.log
+/config.status
+/config.sub
+/configure
+/depcomp
+/aclocal.m4
+/Makefile
+/autom4te.cache
+/install-sh
+/libtool
+/ltmain.sh
+/missing
+/compile
Index: tags/siscone-3.0.4/TODO
===================================================================
--- tags/siscone-3.0.4/TODO (revision 0)
+++ tags/siscone-3.0.4/TODO (revision 420)
@@ -0,0 +1,2 @@
+//!\file TODO
+
Index: tags/siscone-3.0.4/doc/latex/.gitignore
===================================================================
--- tags/siscone-3.0.4/doc/latex/.gitignore (revision 0)
+++ tags/siscone-3.0.4/doc/latex/.gitignore (revision 420)
@@ -0,0 +1 @@
+/*
Index: tags/siscone-3.0.4/doc/latex
===================================================================
--- tags/siscone-3.0.4/doc/latex (revision 419)
+++ tags/siscone-3.0.4/doc/latex (revision 420)
Property changes on: tags/siscone-3.0.4/doc/latex
___________________________________________________________________
Added: svn:ignore
## -0,0 +1 ##
+*
Index: tags/siscone-3.0.4/doc/devel/html/footer.html
===================================================================
--- tags/siscone-3.0.4/doc/devel/html/footer.html (revision 0)
+++ tags/siscone-3.0.4/doc/devel/html/footer.html (revision 420)
@@ -0,0 +1,13 @@
+<hr size="1"><address style="align: right;"><small>
+The <a href="http://projects.hepforge.org/siscone" target="_top">
+SISCone</a> project has been developed by
+<a href="http://www.lpthe.jussieu.fr/~salam" target="_top">
+Gavin Salam</a> and
+<a href="http://www.theo.phys.ulg.ac.be/~soyez" target="_top">
+Gregory Soyez</a><br>
+Documentation generated on $datetime for $projectname by&nbsp;
+<a href="http://www.doxygen.org/index.html">Doxygen</a> $doxygenversion
+</small>
+</address>
+</body>
+</html>
Index: tags/siscone-3.0.4/doc/html/.gitignore
===================================================================
--- tags/siscone-3.0.4/doc/html/.gitignore (revision 0)
+++ tags/siscone-3.0.4/doc/html/.gitignore (revision 420)
@@ -0,0 +1 @@
+/*
Index: tags/siscone-3.0.4/doc/html/usage.html
===================================================================
--- tags/siscone-3.0.4/doc/html/usage.html (revision 0)
+++ tags/siscone-3.0.4/doc/html/usage.html (revision 420)
@@ -0,0 +1,391 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+
+<head>
+<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>SISCone: Usage</title>
+<link href="doxygen.css" rel="stylesheet" type="text/css">
+<link href="style.css" rel="stylesheet" type="text/css">
+</head>
+
+<body>
+
+<!------------>
+<!-- Header -->
+<!------------>
+<h1 align="center">SISCone Documentation</h1>
+<p>
+<a name="top"></a>
+<h3 align="center">Version 3.0.4</h3>
+</p>
+<hr size="1">
+
+
+<!---------->
+<!-- Menu -->
+<!---------->
+<p>
+<a href="index.html"><img src="home.png" align="right" alt="home"></a>
+SISCone is written in C++ and is provided as a library. We describe below 3 ways of using it:
+<ul>
+<li> Using the <a href="#appli">sample application</a> </li>
+<li> Using the <a href="#lib">library</a> (from source code)</li>
+<li> Using the <a href="#fjp">FastJet plugin</a> </li>
+<li> Using <a href="#sph">SISCone in spherical coordinates</a> (<i>e<sup>+</sup>e<sup>-</sup></i> collisions) </li>
+<li> Using <a href="#sPR">SISCone with progressive removal</a> </li>
+</ul>
+</p>
+<p>
+For the <i>e<sup>+</sup>e<sup>-</sup></i> events, we provide an
+implementation of SISCone in spherical
+coordinates. See <a href="#sph">here</a> for details on how to use it.
+</p>
+<hr size="1">
+
+<!----------------------------->
+<!-- Application description -->
+<!----------------------------->
+<p>
+<a href="index.html"><img src="home.png" align="right" alt="home"></a>
+<h2><a name="appli">Using the sample application</a></h2>
+</p>
+<p>
+For simple applications, SISCone comes with a command-line application
+<table class="code">
+<tr><td><pre class="fragmant">
+Usage: ./siscone &lt;args&gt;
+
+Here is an exhaustive list of the arguments:
+Parameters control (with default values):
+ -n &lt;val&gt;, --number=&lt;val&gt; : set the maximum number of particles allowed (all)
+ -R &lt;val&gt;, --radius=&lt;val&gt; : set the radius (0.7)
+ -f &lt;val&gt;, --fraction=&lt;val&gt;: set the overlap parameter (0.5)
+ -p &lt;val&gt;, --ptmin=&lt;val&gt; : set the minimal pT for protojets (0)
+ -e &lt;val&gt;, --event=&lt;val&gt; : set the event filename (events/single-event.dat)
+ -n &lt;val&gt;, --npass=&lt;val&gt; : set the number of passes (0 for infinity) (0)
+ -s &lt;val&gt;, --sm=&lt;val&gt; : set the variable for split-merge (pttilde)
+
+Output flags:
+ --version : show version information
+ -h, --help : show this message
+ -v, --verbose: be verbose (on by default)
+ -q, --quiet : be quiet
+</pre>
+</td></tr>
+</table>
+</p>
+<p>
+The program outputs two files:
+<ul>
+<li> <tt>particles.dat</tt>: the list of particles as a two-column file giving the rapidity <em>y</em> and azimuthal angle &phi; for each particle</li>
+<li> <tt>jets.dat</tt>: the first line gives the number of jets. Then comes the list of jets within 4 columns giving, for each jet, the (<em>y</em>, &phi;) coordinates of its centre, its <em>p<sub>T</sub></em> and the number of particles it contains. The remaining part of the file lists the jet content. This is again given in 4 columns: the (<em>y</em>, &phi;) coordinates of the particle, its index in the initial list and the index of the jet to which it belongs.</li>
+</ul>
+</p>
+<p><a href="#top">Back to top</a></p>
+<hr size="1">
+
+
+<!------------------------->
+<!-- Library description -->
+<!------------------------->
+<p>
+<a href="index.html"><img src="home.png" align="right" alt="home"></a>
+<h2><a name="lib">Using the library</a></h2>
+</p>
+<p>
+SISCone can be more conveniently used directly in C++ program linked against the SISCone library.
+There are basically two objects that are important for users:
+</p>
+
+<h3><code>Cmomentum</code>: the 4-momentum class</h3> (see <tt><a class="code" href="../devel/html/momentum_8h_source.html">momentum.h</a></tt> for details)<br>
+
+<p>
+This class is used to store the property of one particle. It is defined through the 4-momentum coordinates of the particle e.g., to create a particle of momentum <tt>px</tt> <tt>py</tt> <tt>pz</tt> and energy <tt>E</tt><br>
+<table class="code">
+<tr><td>
+<pre class="fragment">
+ <a class="code" href="../devel/html/classsiscone_1_1Cmomentum.html">Cmomentum</a> particle=<a class="code" href="../devel/html/classsiscone_1_1Cmomentum.html">Cmomentum</a>(px, py, pz, E);
+</pre>
+</td></tr>
+</table>
+</p>
+
+<h3><code>Csiscone</code>: the SISCone jet finder</h3> (see <tt><a class="code" href="../devel/html/siscone_8h_source.html">siscone.h</a></tt> for details)<br>
+
+<p>
+The <a class="code" href="../devel/html/classsiscone_1_1Csiscone.html">Csiscone</a> class is the main class of interest of the algorithm. It is the one that you want to use to calculate the jets from a given set of particles. The algorithm is called through the following members:
+<table class="code">
+<tr><td><pre class="fragment">
+ int Csiscone::compute_jets(vector&lt;Cmomentum&gt; &#38;particles,
+ double R, double f, int n_pass_max=0, double ptmin=0.0,
+ Esplit_merge_scale _split_merge_scale=SM_pttilde);
+ int Csiscone::recompute_jets(double f, double ptmin=0.0,
+ Esplit_merge_scale _split_merge_scale=SM_pttilde);
+</pre></td></tr>
+</table>
+</p>
+<p>
+The first of those methods takes the following information as argument:
+<ul>
+<li> <tt>particles</tt>: the list of particles to deal with under the form of a <a href="http://www.sgi.com/tech/stl/">STL</a> vector of particles.</li>
+<li> <tt>R</tt>: the radius of the cone used to scan for stable cones (protocones)</li>
+<li> <tt>f</tt>: the overlap parameter. When splitting and merging protocones, two overlapping cones are split (resp. merged) when their overlapping <em>p<sub>T</sub></em> is smaller (resp. larger) than a fraction <tt>f</tt> of the smallest <em>p<sub>T</sub></em> of the parents. </li>
+<li> <tt>n_pass_max</tt>: maximum number of passes. When computing protocones, it happens that some particles do not enter into jet. We can therefore re-run the algorithm with those particles only. This parameter controls the number of such passes. It has been set to 1 by default. If you want to run the algorithm until all particles are associated with a jet or no new stable cone are found, set it to 0.</li>
+<li> <tt>ptmin</tt>: minimal <i>p<sub>T</sub></i> for the protojets included in the split-merge process. At each step of the split-merge process, we remove jet candidates which have a <i>p<sub>T</sub></i> less than <tt>ptmin</tt>.</li>
+<li> <tt>split_merge_scale</tt>: variable to use for split-merge (ordering and overlap fraction computation). This can be <tt>SM_pttilde</tt>, <tt>SM_Et</tt>, <tt>SM_mt</tt> or <tt>SM_pt</tt>, respectively corresponding to a p-scheme <i>p<sub>T</sub></i>, the transverse energy <i>E<sub>T</sub></i>, the transverse mass <i>m<sub>T</sub></i> or the transverse momentum <i>p<sub>T</sub></i>. We highly recommand to keep the default value <tt>SM_pttilde</tt> (see <a href="sm_issue.html">this note</a> for details)</li>
+</ul>
+The second member (<tt>recompute_jets</tt>) allows you to rerun the split/merge algorithm with a different overlap parameter.
+</p>
+<p>
+<b>Remark:</b> The algorithm has been placed inside the <tt>namespace siscone</tt>. Hence, you should either add the line <tt>using namespace siscone;</tt> on top of your applications, or prefix any call to the siscone library by <tt>siscone::</tt>.
+</p>
+
+<h3>Output</h3>
+<p>
+The result of calling <tt>compute_jets(...)</tt> or <tt>recompute_jets(...)</tt> is stored in the vector
+<table class="code">
+<tr><td><pre class="fragment">
+vector&lt;Cjet&gt; Csiscone::jets;
+</pre></td></tr>
+</table>
+The elements of that vector contain all necessary information concerning the jets:
+<ul>
+<li> <tt>Cjet::v</tt>: 4-momentum of the jet.</li>
+<li> <tt>Cjet::n</tt>: number of particles in the jet.</li>
+<li> <tt>Cjet::contents</tt>: jet contents. It is stored as a <tt>vector&lt;int&gt;</tt> listing the indices of the particles contained in the jet.</li>
+<li> <tt>Cjet::pass</tt> : pass at which the jet has been found (0 is the first, -1 means that the particle has not been included in the analysis <em>i.e.</em> it has infinite rapidity).</li>
+</ul>
+</p>
+
+<h3>an illustrative example</h3>
+<p>
+Here follows an example which illustrates the usage of those objects (see also <tt>main.cpp</tt> in the scones tree)
+<table class="code">
+<tr><td>
+<pre class="fragment">
+01 <span class="preprocessor">#include &lt;stdio.h&gt;</span>
+02 <span class="preprocessor">#include &lt;iostream&gt;</span>
+03 <span class="preprocessor">#include "siscone/momentum.h"</span>
+04 <span class="preprocessor">#include "siscone/siscone.h"</span>
+05
+06 <span class="preprocessor">#define R 0.7</span>
+07 <span class="preprocessor"></span><span class="preprocessor">#define f 0.5</span>
+08 <span class="preprocessor"></span><span class="preprocessor">#define f_alt 0.75</span>
+09 <span class="preprocessor"></span>
+10 <span class="keyword">using namespace </span>std;
+11 <span class="keyword">using namespace </span>siscone;
+12
+13 <span class="keywordtype">int</span> main(<span class="keywordtype">int</span> argc, <span class="keywordtype">char</span> *argv[]){
+14 vector&lt;Cmomentum&gt; particles; <span class="comment">// list of particles</span>
+15 <a class="code" href="../devel/html/classsiscone_1_1Csiscone.html">Csiscone</a> siscone; <span class="comment">// main object for the cone algorithm</span>
+16 <span class="keywordtype">int</span> i; <span class="comment">// loop index</span>
+17 <span class="keywordtype">int</span> N; <span class="comment">// number of particles</span>
+18 <span class="keywordtype">double</span> px,py,pz,E; <span class="comment">// particles 4-momentum</span>
+19 <span class="keywordtype">char</span> fline[512]; <span class="comment">// line to read from a file</span>
+20
+21 <span class="comment">// read particles</span>
+22 FILE *flux;
+23 flux = fopen(<span class="stringliteral">"events/single-event.dat"</span>, <span class="stringliteral">"r"</span>);
+24 <span class="keywordflow">if</span> (flux==NULL){
+25 cerr &lt;&lt; <span class="stringliteral">"cannot read event"</span> &lt;&lt; endl;
+26 <span class="keywordflow">return</span> 1;
+27 }
+28
+29 N=0;
+30 <span class="keywordflow">while</span> (fgets(fline, 512, flux)!=NULL){
+31 <span class="keywordflow">if</span> (fline[0]!=<span class="charliteral">'#'</span>){ <span class="comment">// skip lines beginning with '#'</span>
+32 <span class="keywordflow">if</span> (sscanf(fline, <span class="stringliteral">"%le%le%le%le"</span>, &amp;px, &amp;py, &amp;pz, &amp;E)==4){
+33 particles.push_back(<a class="code" href="../devel/html/classsiscone_1_1Cmomentum.html">Cmomentum</a>(px, py, pz, E));
+34 N++;
+35 } <span class="keywordflow">else</span> {
+36 cout &lt;&lt; <span class="stringliteral">"error in reading event file Giving up."</span> &lt;&lt; endl;
+37 fclose(flux);
+38 <span class="keywordflow">return</span> 2;
+39 }
+40 }
+41 }
+42 fclose(flux);
+43
+44 <span class="comment">// compute jets</span>
+45 <span class="comment">// first compute with multiple passes (default)</span>
+46 i=siscone.<a class="code" href="../devel/html/classsiscone_1_1Csiscone.html#a259669f7c1f86fd220d1024fe44dba45">compute_jets</a>(particles, R, f);
+47 cout &lt;&lt; <span class="stringliteral">" "</span> &lt;&lt; i &lt;&lt; <span class="stringliteral">" jets found in multi-pass run"</span> &lt;&lt; endl;
+48
+49 <span class="comment">// then, recompute it with a different f</span>
+50 i=siscone.<a class="code" href="../devel/html/classsiscone_1_1Csiscone.html#a3bb2362bcc9bed2ae8903afefd6646a0">recompute_jets</a>(f_alt);
+51 cout &lt;&lt; <span class="stringliteral">" "</span> &lt;&lt; i &lt;&lt; <span class="stringliteral">" jets found with alterntive f"</span> &lt;&lt; endl;
+52
+53 <span class="comment">// compute jets with a single pass</span>
+54 i=siscone.<a class="code" href="../devel/html/classsiscone_1_1Csiscone.html#a259669f7c1f86fd220d1024fe44dba45">compute_jets</a>(particles, R, f, 1);
+55 cout &lt;&lt; <span class="stringliteral">" "</span> &lt;&lt; i &lt;&lt; <span class="stringliteral">" jets found in single-pass run"</span> &lt;&lt; endl;
+56
+57 <span class="comment">// show jets</span>
+58 vector&lt;Cjet&gt;::iterator it_j;
+59 <span class="keywordtype">int</span> i1;
+60 fprintf(stdout, <span class="stringliteral">"# pT eta"</span>);
+61 fprintf(stdout, <span class="stringliteral">" phi px py pz E \n"</span>);
+62 <span class="keywordflow">for</span> (it_j = siscone.<a class="code" href="../devel/html/classsiscone_1_1Csplit__merge.html#ad01c675d4c79de395656cf25fadc8cc1">jets</a>.begin(), i1=0 ;
+63 it_j != siscone.<a class="code" href="../devel/html/classsiscone_1_1Csplit__merge.html#ad01c675d4c79de395656cf25fadc8cc1">jets</a>.end() ; it_j++, i1++){
+64 fprintf(stdout, <span class="stringliteral">"Jet %3d: %10.3f %8.3f %8.3f"</span>,
+65 i1, it_j-&gt;v.perp(), it_j-&gt;v.eta, it_j-&gt;v.phi);
+66 fprintf(stdout, <span class="stringliteral">" %10.3f %10.3f %10.3f %10.3f\n"</span>,
+67 it_j-&gt;v.px, it_j-&gt;v.py, it_j-&gt;v.pz, it_j-&gt;v.E);
+68 }
+69
+70 <span class="keywordflow">return</span> 0;
+71 }</pre>
+</td></tr>
+</table>
+</p>
+<p><a href="#top">Back to top</a></p>
+<hr size="1">
+
+
+<!--------------------------------------->
+<!-- description of the FastJet plugin -->
+<!--------------------------------------->
+<p>
+<a href="index.html"><img src="home.png" align="right" alt="home"></a>
+<h2><a name="fjp">Using the FastJet plugin</a></h2>
+</p>
+<p>
+SISCone is available as a plugin of the FastJet project. The plugin is
+named <a class="code" href="http://fastjet.fr/repo/doxygen-3.1.3/classfastjet_1_1SISConePlugin.html"><code>SISConePlugin</code></a>. Note that it requires at least
+version 2.1 of FastJet. See
+the <a href="http://fastjet.fr">FastJet website</a> for details.
+</p>
+<p><a href="#top">Back to top</a></p>
+
+
+<!--------------------------------------->
+<!-- The spherical implementation -->
+<!--------------------------------------->
+
+<hr size="1">
+<p>
+<a href="index.html"><img src="home.png" align="right" alt="home"></a>
+<h2><a name="sph">The spherical version of SISCone</a></h2>
+</p>
+<p>
+To allow clustering of <i>e<sup>+</sup>e<sup>&ndash;</sup></i> events, an
+implementation of SISCone in spherical coordinates is available (as of
+version 2.0 of SISCone).
+</p>
+<p>
+Its usage is very similar to that of the basic implementation of SISCone,
+so we just highlight the few differences here:
+
+<ul>
+<li>The spherical version, uses energy <i>E</i> and normal angles,
+rather than the longitudinally boost-invariant <i>p<sub>t</sub></i>,
+rapidity and azimuth. Specifically:
+ <ul>
+ <li>The distance between a pair of particle is the angle between
+ the pair particles (equivalently the the distance on the
+ surface of a unit sphere). Similarily, the cone
+ radius <i>R</i> is also defined as the cone half-opening
+ angle.</li>
+ <li>During the split--merge step, we use the energy of the
+ particles rather than their transverse momentum. However, as
+ in the standard situation where ordering the protojets
+ in <i>p<sub>t</sub></i> led to infrared-unsafeties, ordering
+ the protojets in energy in the spherical case also leads to
+ infrared unsafeties. To solve that problem, we introduce the
+ new variable<br>
+ <img align="center" src="etilde.jpg" alt="Etilde"><br>
+ and use it to order the protojets. Note that to compute the
+ overlap fraction, we keep using the plain energy (which is
+ perfectly safe in this case). In practice, when invoking the
+ clustering, this corresponds to the default choice
+ of <code>SM_Etilde</code> for the split--merge scale. If one
+ rather wants to use <i>E</i> despite its infrared-unsafety
+ problems, one can specify <code>SM_E</code> instead.</li>
+</ul></li>
+<li>The structure remains the same as for the basic implementation but
+ the class names have been prefixed by <code>CSph</code> instead of
+ just <code>C</code>. For example, the list of 4-momenta should be
+ of the <a class="code" href="../devel/html/classsiscone__spherical_1_1CSphmomentum.html"><code>CSphmomentum</code></a>
+ type <sup><font size="-2">(<a href="#type_explain">1</a>)</font></sup>,
+ the clustering is done using <a class="code" href="../devel/html/classsiscone__spherical_1_1CSphsiscone.html"><code>CSphsiscone</code></a> and the jets
+ are stored in <a class="code" href="../devel/html/classsiscone__spherical_1_1CSphjet.html"><code>CSphjet</code></a> objects.</li>
+<li>The classes for the spherical implementation are placed under
+ the <code>siscone_spherical</code> namespace.</li>
+<li>The library is called <code>libsiscone_spherical.{a,so}</code>
+ rather than <code>libsiscone.{a,so}</code>.</li>
+<li>The spherical version of SISCone is available as a FastJet plugin
+ named <a class="code" href="http://fastjet.fr/repo/doxygen-3.1.3/classfastjet_1_1SISConeSphericalPlugin.html"><code>SISConeSphericalPlugin</code></a>.</li>
+</ul>
+
+
+<font size="-2"><sup>(<a name="type_explain">1</a>)</sup>The main reason for having
+two classes for the 4-momenta is that SISCone is internally optimised
+to avoid repeated computation of expensive quantities like the
+rapidity. Since the spherical version makes use of the polar angle
+&theta; instead of the rapidity <i>y</i>, having 2 separate classes
+allows to optimise both situations.</font>
+</p>
+
+<!--------------------------------------->
+<!-- SISCone with progressive removal -->
+<!--------------------------------------->
+
+<hr size="1">
+<p>
+<a href="index.html"><img src="home.png" align="right" alt="home"></a>
+<h2><a name="sPR">SISCone with progressive removal</a></h2>
+</p>
+<p>
+Since version 3.0.0, SISCone with progressive removal provides an
+alternative to the standard split--merge algorithm used by default with
+SISCone. The SISCone-PR algorithm works as follows
+
+<ol>
+<li> search for stable cones.</li>
+<li> declare the hardest stable cone a jet and remove its particles from the list of remaining particles.</li>
+<li> if there are some remaining particles, go back to 1.</li>
+</ol>
+
+In practice, jets are obtained by creating a <tt>Csiscone</tt>
+(or <tt>CSphsiscone</tt> object) as described above and calling
+<br>
+<br>
+<table class="code">
+<tr><td><pre class="fragment">
+ int Csisscone::compute_jets_progressive_removal(vector&lt;Cmomentum&gt; &#38;particles,
+ double R, int n_pass_max=0, double ptmin=0.0,
+ Esplit_merge_scale _split_merge_scale=SM_pttilde);
+</pre></td></tr>
+</table>
+<br>
+
+This results in circular hard jets (analogously to
+anti-kt). The complexity of the algorithm is <i>N<sup>2</sup></i>
+log(<i>N</i>).
+
+The scale used to decide which stable cone is the hardest can be
+chosen in the same way as the ordering scale for the split--merge
+procedure. The default (SM_pttilde for the standard, <i>pp</i>,
+version of SISCone; SM_Etilde for the version in spherical
+coordinates) is recommended. Alternatively, a user-defined scale
+choice can be provided: the user has to derive their favourite scale
+choice from <a class="code"
+href="../devel/html/classsiscone_1_1Csplit__merge_1_1Cuser__scale__base.html"><code>Csiscone::Cscale_choice</code></a>
+and then use <a class="code"
+href="../devel/html/classsiscone_1_1Csplit__merge.html#a6d7c9a22f5a0f9b0a329336aa463e92b"><code>Csiscone::set_user_scale()</code></a>
+with a pointer to an instance of that class to activate the
+user-defined choice.
+</p>
+
+<p><a href="#top">Back to top</a></p>
+
+
+<!------------>
+<!-- footer -->
+<!------------>
+<hr size="1">
+<a href="index.html">Home</a><br>
+Contacts: &nbsp;<a href="mailto:soyez@fastjet.fr">Gregory Soyez</a>
+&nbsp;<a href="mailto:gavin.salam@cern.ch">Gavin Salam</a>
+
+</body>
+</html>
Index: tags/siscone-3.0.4/doc/html/algo_main.png
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+++ tags/siscone-3.0.4/doc/html/download.html (revision 420)
@@ -0,0 +1,47 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+
+<head>
+<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>SISCone: Download</title>
+<link href="style.css" rel="stylesheet" type="text/css">
+</head>
+
+<body>
+<!------------>
+<!-- Header -->
+<!------------>
+<h1 align="center">SISCone Documentation</h1>
+<p>
+<a name="top"></a>
+<h3 align="center">Version 3.0.4</h3>
+</p>
+<hr size="1">
+
+<h2 align="center">Downloading SISCone</h2>
+
+<p>
+You can download here the of SISCone source code. It is developped under the terms of the GNU General Public License (GPL). A version of the license should be included in the code.
+</p>
+<p>
+The algorithm used by SISCone has been subject of a publication in
+<a href="http://www.iop.org/EJ/abstract/-search=23274672.1/1126-6708/2007/05/086">JHEP 05 (2007) 086</a>
+[<a href="http://arxiv.org/abs/0704.0292">arXiv:0704.0292 (hep-ph)</a>]. Please refer to that work each time it is appropriate.
+</p>
+<p>
+<a href="http://www.hepforge.org/downloads/siscone/siscone-3.0.4.tar.gz">Download SISCone 3.0.4</a> (latest stable - October 2018 - <a href="../../NEWS">Release notes</a>)
+</p>
+
+<p>
+You can alternatively download SISCone from its SVN repository.<br> This can be browsed via <a href="http://siscone.hepforge.org/svn">HTTP access</a> or accessed using the Subversion repository <kbd>svn+ssh://vcs@phab.hepforge.org/source/sisconesvn</kbd>.
+</p>
+
+<!------------>
+<!-- footer -->
+<!------------>
+<hr size="1">
+<a href="index.html">Home</a><br>
+Contacts: &nbsp;<a href="mailto:soyez@fastjet.fr">Gregory Soyez</a>
+&nbsp;<a href="mailto:gavin.salam@cern.ch">Gavin Salam</a>
+</body>
+</html>
Index: tags/siscone-3.0.4/doc/html/index.html
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+
+<head>
+<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>SISCone : Main Page</title>
+<link href="style.css" rel="stylesheet" type="text/css">
+</head>
+
+<body>
+<!------------>
+<!-- Header -->
+<!------------>
+<h1 align="center">SISCone Documentation</h1>
+<p>
+<a name="top"></a>
+<h3 align="center">Version 3.0.4</h3>
+</p>
+<hr size="1">
+
+<p>
+SISCone is a <i><u>S</u>eedless <u>I</u>nfrared <u>S</u>afe <u>Cone</u> jet algorithm</i>.
+</p>
+<p>
+It was developped by Gavin Salam and Gregory Soyez.
+It is available as a library, as a standalone program
+or as a <a href="http://fastjet.fr">FastJet</a> (&gt;= 2.1) plugin.
+</p>
+<p>
+<table border=1>
+
+<tr><td bgcolor=#ffcc88> <b>News (October 1st 2018)</b>: We have
+released a new version of <b>SISCone (v3.0.4)</b>. This minor release improves the treatment of inter-dependences in the SISCone library.<br> Relative to the 2.0.X series, SISCone 3.0.X adds the option of running SISCone with progressive removal (instead of the standard split-merge step). This version will be available in FastJet(>=3.3.2).
+</td></tr>
+</table>
+</p>
+<p>
+The algorithm is described in the publication
+<a href="http://www.iop.org/EJ/abstract/-search=23274672.1/1126-6708/2007/05/086">JHEP 05 (2007) 086</a>
+[<a href=http://arxiv.org/abs/0704.0292>arXiv:0704.0292 [hep-ph]</a>]. See
+the links below for more detailed information.
+</p>
+<p>
+<u><i>Useful links</i></u></br>
+<ul>
+<li><a href="usage.html">How to use SISCone</a></li>
+<li><a href="download.html">Download SISCone</a></li>
+<li><a href="algorithm.html">Description of the algorithm</a></li>
+<li><a href="perfs.html">Algorithm performance</a></li>
+<li><a href="../devel/html/index.html">Developer documentation</a> (built from the code using <a href="http://www.doxygen.org">doxygen</a>)</li>
+<li><a href="https://siscone.hepforge.org">SISCone</a> webpage on <a href="https://www.hepforge.org">HEPForge</a></li>
+</ul>
+<!------------>
+<!-- footer -->
+<!------------>
+<hr size="1">
+<a href="index.html">Home</a><br>
+Contacts: &nbsp;<a href="mailto:soyez@fastjet.fr">Gregory Soyez</a>
+&nbsp;<a href="mailto:gavin.salam@cern.ch">Gavin Salam</a>
+</body>
+</html>
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+digraph algo_main {
+ nodesep=0.15;
+ ranksep=0.15;
+ node [shape=box,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000"];
+ intro [label="Put the set of current particles\nequal to the set of all particles in the event"];
+ proto [label="Find all stable cones for the current set of particles"]
+ add_proto [label="Add each stable cone (defined by the set\nof particles contained in the cone)\nto the list of protojets"];
+ remove [label="Remove all particles that are in stable cones\nfrom the list of current particles"];
+ end_algo [label="Run the Tevatron Run-II split-merge procedure\non the full list of protojets, with overlap parameter f",height=0.5];
+
+ node [shape=polygon,sides=4,orientation=45];
+ end_loop [label="No new stable cones have been found\nOR one has gone around the loop Npass times"];
+
+ node [style="invis",fixedsize=true];
+ proto_partner [width=0,height=0];
+ end_loop_partner [width=0,height=0];
+
+ { rank="same"; proto; proto_partner; }
+ { rank="same"; end_loop; end_loop_partner; }
+
+ edge [arrowsize=0.7];
+
+ intro -> proto -> add_proto -> remove -> end_loop;
+ end_loop -> end_algo [label=" yes"];
+
+ end_loop -> end_loop_partner[weight=0,dir=none];
+ proto -> proto_partner[weight=0,dir=back];
+ end_loop_partner -> proto_partner[label=" no",samehead,sametail,dir=none];
+}
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+
+<head>
+<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>SISCone: Performances</title>
+<link href="style.css" rel="stylesheet" type="text/css">
+</head>
+
+<body>
+<!------------>
+<!-- Header -->
+<!------------>
+<h1 align="center">SISCone Documentation</h1>
+<p>
+<a name="top"></a>
+<h3 align="center">Version 3.0.4</h3>
+</p>
+<hr size="1">
+
+<h2 align="center">Execution time</h2>
+This figure shows the execution time as a function of the number of particles and compares it with other algorithms.
+It has been obtained on a 3.4 GHz Pentium&reg; IV processor.
+<p>
+<img align="center" src="timings.png">
+</p>
+
+<hr size="1">
+
+<h2 align="center">Algorithm complexity</h2>
+<p>
+SISCone's complexity is dominated by the search for stable cones. If N is the number of particles in the event and n the number of particles in a cone, the complexity goes like
+</p>
+<p>
+&nbsp; &nbsp; &nbsp; &nbsp;N n log(n)
+</p>
+<p>
+dominated by the ordering of the O(n) points in the vicinity of each particle.
+</p>
+<p>
+Note: for the version of SISCone with progressive-removal, the stable-sone search has to be repeated O(N/n) times, yielding a O(N<sup>2</sup>log(n)) complexity.
+</p>
+
+<!------------>
+<!-- footer -->
+<!------------>
+<hr size="1">
+<a href="index.html">Home</a><br>
+Contacts: &nbsp;<a href="mailto:soyez@fastjet.fr">Gregory Soyez</a>
+&nbsp;<a href="mailto:gavin.salam@cern.ch">Gavin Salam</a>
+</body>
+</html>
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+
Index: tags/siscone-3.0.4/doc/html/algorithm.html
===================================================================
--- tags/siscone-3.0.4/doc/html/algorithm.html (revision 0)
+++ tags/siscone-3.0.4/doc/html/algorithm.html (revision 420)
@@ -0,0 +1,36 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+
+<head>
+<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>SISCone: Algorithm</title>
+<link href="style.css" rel="stylesheet" type="text/css">
+</head>
+
+<body>
+<!------------>
+<!-- Header -->
+<!------------>
+<h1 align="center">SISCone Documentation</h1>
+<p>
+<a name="top"></a>
+<h3 align="center">Version 3.0.4</h3>
+</p>
+<hr size="1">
+
+
+<h2 align="center">Scheme for the main algorithm</h2>
+<img align="center" src="algo_main.png">
+<hr size="1">
+<h2 align="center">Scheme for stable cone determination</h2>
+<img align="center" src="algo_stable.png">
+
+<!------------>
+<!-- footer -->
+<!------------>
+<hr size="1">
+<a href="index.html">Home</a><br>
+Contacts: &nbsp;<a href="mailto:soyez@fastjet.fr">Gregory Soyez</a>
+&nbsp;<a href="mailto:gavin.salam@cern.ch">Gavin Salam</a>
+</body>
+</html>
Index: tags/siscone-3.0.4/doc/html/sm_issue.html
===================================================================
--- tags/siscone-3.0.4/doc/html/sm_issue.html (revision 0)
+++ tags/siscone-3.0.4/doc/html/sm_issue.html (revision 420)
@@ -0,0 +1,78 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+
+<head>
+<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
+<title>SISCone: split-merge issues</title>
+<link href="style.css" rel="stylesheet" type="text/css">
+</head>
+
+<body>
+<!------------>
+<!-- Header -->
+<!------------>
+<h1 align="center">SISCone Documentation</h1>
+<p>
+<a name="top"></a>
+<h3 align="center">Version 3.0.4</h3>
+</p>
+<hr size="1">
+
+<h2>
+The split-merge variable issue:
+</h2>
+
+SISCone is intended to be a cone algorithm that is as close as
+possible to the <a
+href="http://xxx.lanl.gov/abs/hep-ex/0005012">Tevatron run II cone
+algorithm</a>, while also being infrared (IR) safe.
+
+<p> Though the main IR difficulties are related to the search for
+stable cones, and are solved by a seedless procedure, it turns out
+that the split-merge phase of the algorithm is also non-trivial.
+The Tevatron run II split-merge procedure requires that "protojets" be
+considered in a sequence determined by some ordering variable. A
+change in the sequence can leads to a change in the final jets.
+
+When trying to find the best suited variable for the ordering of protojets in
+the split--merge process of SISCone, we met a couple of physical issues.
+Their history goes as follows:
+<ul>
+<li> the <i>E<sub>t</sub></i> variable, suggested e.g. in the Tevatron Run II
+specification of the midpint algorithm, is not boost invariant.</li>
+
+<li> the <i>p<sub>t</sub></i> variable, used e.g. in practical midpoint
+implementations (except for MCFM), suffers from problems with two back-to-back
+protojets. Due to momentum conservation, they can have the same <i>p<sub>t</sub></i>.
+Their ordering is thus random and can be modified by the addition of a soft
+particle, leading to an IR unsafety problem.</li>
+
+
+<li> the <i>m<sub>t</sub></i> variable does not directly suffer from that
+problem: two back-to-back jets only overlap if they cover a region in
+the eta-phi plane. In that case, their values of <i>m<sub>t</sub></i> will
+differ and the ordering is safe. This choice (the default one for
+SISCone 1.1.0) suffers unfortunately from one remaining issue: though
+<i>m<sub>t</sub></i> works for pure QCD, in the case of two back-to-back
+narrow-decay-width unstable particles (e.g. a pair of Higgs bosons), both <i>p<sub>t</sub>
+and </i><i>m<sub>t</sub></i> will be the same. </li>
+
+<li> As of SISCone 1.1.1, we use <i>pttilde</i>: the p-scheme pt
+(the sum of the moduli of transverse momenta of all particles in the
+protojet ) that interpolates between <i>p<sub>t</sub></i> and
+<i>m<sub>t</sub></i> according to the decay plane of the unstable
+massive particle. This will lift the degeneracy between decays of
+identical pairs of unstable particles, since the phase space for them
+to have identical decay planes vanishes.</li>
+</ul>
+
+<!------------>
+<!-- footer -->
+<!------------>
+<hr size="1">
+<a href="index.html">Home</a><br>
+Contacts: &nbsp;<a href="mailto:soyez@fastjet.fr">Gregory Soyez</a>
+&nbsp;<a href="mailto:gavin.salam@cern.ch">Gavin Salam</a>
+
+</body>
+</html>
Index: tags/siscone-3.0.4/doc/html/home.xpm
===================================================================
--- tags/siscone-3.0.4/doc/html/home.xpm (revision 0)
+++ tags/siscone-3.0.4/doc/html/home.xpm (revision 420)
@@ -0,0 +1,36 @@
+/* XPM */
+static char * home_xpm[] = {
+"24 24 9 1",
+" c None",
+". c #020202",
+"+ c #6C7962",
+"@ c #7A8A6E",
+"# c #FEFEFE",
+"$ c #7E8E76",
+"% c #82927A",
+"& c #C8CEC4",
+"* c #E3E7E1",
+" ",
+" ",
+" ",
+" ",
+" . ... ",
+" .#. .&. ",
+" .#*%..&. ",
+" .##&&$.&. ",
+" .##&&&&$&. ",
+" .*#&&&&&&@. ",
+" .##&&&&&&&&+. ",
+" .###&&&&&&&&&+. ",
+" ...##&&&&&&&&+... ",
+" .##&&&&&&&&+. ",
+" .##....&&&&+. ",
+" .##.&&.&&&&+. ",
+" .##.&&.&&&&+. ",
+" .#*.&&.&&&&+. ",
+" .&+.++.+++++. ",
+" ............. ",
+" ",
+" ",
+" ",
+" "};
Index: tags/siscone-3.0.4/doc/html/timings.png
===================================================================
Cannot display: file marked as a binary type.
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Index: tags/siscone-3.0.4/doc/html/timings.png
===================================================================
--- tags/siscone-3.0.4/doc/html/timings.png (revision 419)
+++ tags/siscone-3.0.4/doc/html/timings.png (revision 420)
Property changes on: tags/siscone-3.0.4/doc/html/timings.png
___________________________________________________________________
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Index: tags/siscone-3.0.4/doc/html/algo_stable.png
===================================================================
Cannot display: file marked as a binary type.
svn:mime-type = application/octet-stream
Index: tags/siscone-3.0.4/doc/html/algo_stable.png
===================================================================
--- tags/siscone-3.0.4/doc/html/algo_stable.png (revision 419)
+++ tags/siscone-3.0.4/doc/html/algo_stable.png (revision 420)
Property changes on: tags/siscone-3.0.4/doc/html/algo_stable.png
___________________________________________________________________
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Index: tags/siscone-3.0.4/doc/html/algo_stable.dot
===================================================================
--- tags/siscone-3.0.4/doc/html/algo_stable.dot (revision 0)
+++ tags/siscone-3.0.4/doc/html/algo_stable.dot (revision 420)
@@ -0,0 +1,119 @@
+digraph algo_stable {
+ nodesep=0.15;
+ ranksep=0.15;
+
+ {
+ nodesep=0.15;
+ ranksep=0.15;
+
+ node [shape=box,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000"];
+
+ init[label="set particle i to be the first particle"];
+
+ vicinity[label="Find all particles j within distance 2R of i and for each\n\
+ j identify the two circles defined by i and j. For each circle,\n\
+ compute the angle of its center C relative to i, \n\
+ (zeta = atan(d phi_{iC}/d y_{iC}))"];
+
+ sort[label="Sort the circles into increasing angle zeta"];
+
+ init_cone[label="For the first circle in this order, calculate the total\n\
+ momentum and checkxor for the cones that it defines.\n\
+ Consider all 4 permutations of edge points being included\n\
+ or excluded. Call these the 'current cones'"];
+
+ node [shape=polygon,sides=2,orientation=45];
+ browse_current[label = "for each of the 4 current cones"];
+ node [shape=box,orientation=0,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000"];
+
+ test_cone1[label="this cone has not yet been found add\nit to the list of distinct cones"];
+
+ test_cone2[label="if this cone has not yet been labelled as unstable, establish\n\
+ if the in/out status of the edge particles (with respect to the cone\n\
+ momentum axis) is the same as when defining the cone; if it is\n\
+ not, label the cone as unstable"];
+
+ node [style="invis",fixedsize=true];
+ end_current[width=0,height=0];
+
+ node [shape=box,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000",fixedsize=false];
+ update_cone[label="Move to the next circle in order. It differs from the previous\n\
+ one either by a particle entering the circle, or one leaving the\n\
+ circle. Calculate the momentum for the new circle by adding (or\n\
+ removing) the momentum of the particle that has entered (left); the\n\
+ checkxor can be updated by XORing with the label of that particle."];
+
+ node [shape=polygon,sides=4,orientation=45];
+ until[label="test if all circles are considered"];
+ node [shape=box,orientation=0,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000"];
+
+ node [shape=polygon,sides=4,orientation=45];
+ next_particle[label="move to the next particle: increment i, if possible"];
+ node [shape=box,orientation=0,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000"];
+
+ node [shape=polygon,sides=2,orientation=45];
+ browse_proto[label = "for each of the cones labelled as unstable"];
+ node [shape=box,orientation=0,style=filled,fillcolor="#CCCCFF",color=blue,fontcolor="#880000"];
+
+ node [shape=polygon,sides=4,orientation=45];
+ final_check[label="Explicitly check if the cone is stable"];
+ node [shape=box,sides=4,orientation=0];
+ check_ok[label="add it to the list of stable cones (protojets)"];
+
+ node [style="invis",fixedsize=true];
+ end_proto[width=0,height=0];
+
+ edge [arrowsize=0.7];
+
+ init -> vicinity -> sort -> init_cone -> browse_current -> test_cone1 -> test_cone2;
+ test_cone2 -> end_current[dir=none];
+ end_current -> update_cone -> until -> next_particle -> browse_proto -> final_check;
+ final_check -> check_ok[label="yes"];
+ check_ok -> end_proto[dir=none];
+ }
+ // virtual nodes
+ /////////////////
+ {
+ node [style="invis",fixedsize=true];
+
+ vicinity_p[width=0,height=0];
+ init_cone_p[width=0,height=0];
+ browse_current_p[width=0,height=0];
+ end_current_p[width=0,height=0];
+ until_p[width=0,height=0];
+ next_particle_p[width=0,height=0];
+ browse_proto_p[width=0,height=0];
+ final_p[width=0,height=0];
+ end_proto_p[width=0,height=0];
+ }
+
+ { rank="same"; vicinity; vicinity_p; }
+ { rank="same"; init_cone; init_cone_p; }
+ { rank="same"; browse_current; browse_current_p; }
+ { rank="same"; end_current; end_current_p; }
+ { rank="same"; until; until_p; }
+ { rank="same"; next_particle; next_particle_p; }
+ { rank="same"; browse_proto; browse_proto_p; }
+ { rank="same"; final_check; final_p; }
+ { rank="same"; end_proto; end_proto_p; }
+
+ edge [arrowsize=0.7];
+
+ end_current->end_current_p[weight=0,dir=none];
+ browse_current->browse_current_p[weight=0,dir=back];
+ end_current_p->browse_current_p[samehead,sametail,dir=none];
+
+ until->until_p[weight=0,dir=none];
+ init_cone->init_cone_p[weight=0,dir=back];
+ until_p->init_cone_p[label=" no",samehead,sametail,dir=none];
+
+ next_particle->next_particle_p[weight=0,dir=none];
+ vicinity->vicinity_p[weight=0,dir=back];
+ next_particle_p->vicinity_p[label=" yes",samehead,sametail,dir=none];
+
+ end_proto->end_proto_p[weight=0,dir=none];
+ final_check->final_p[headlabel="no",weight=0];
+ browse_proto->browse_proto_p[weight=0,dir=back];
+ end_proto_p->final_p[samehead,sametail,dir=none];
+ final_p->browse_proto_p[samehead,sametail,dir=none];
+}
Index: tags/siscone-3.0.4/doc/html/doxygen.css
===================================================================
--- tags/siscone-3.0.4/doc/html/doxygen.css (revision 0)
+++ tags/siscone-3.0.4/doc/html/doxygen.css (revision 420)
@@ -0,0 +1,310 @@
+BODY,H1,H2,H3,H4,H5,H6,P,CENTER,TD,TH,UL,DL,DIV {
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+ font-size: 90%;
+}
+H1 {
+ text-align: center;
+ font-size: 160%;
+}
+H2 {
+ font-size: 120%;
+}
+H3 {
+ font-size: 100%;
+}
+CAPTION { font-weight: bold }
+DIV.qindex {
+ width: 100%;
+ background-color: #e8eef2;
+ border: 1px solid #84b0c7;
+ text-align: center;
+ margin: 2px;
+ padding: 2px;
+ line-height: 140%;
+}
+DIV.nav {
+ width: 100%;
+ background-color: #e8eef2;
+ border: 1px solid #84b0c7;
+ text-align: center;
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+ line-height: 140%;
+}
+DIV.navtab {
+ background-color: #e8eef2;
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+ font-size: 70%;
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+A.qindex {
+ text-decoration: none;
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Index: tags/siscone-3.0.4/doc/html
===================================================================
--- tags/siscone-3.0.4/doc/html (revision 419)
+++ tags/siscone-3.0.4/doc/html (revision 420)
Property changes on: tags/siscone-3.0.4/doc/html
___________________________________________________________________
Added: svn:ignore
## -0,0 +1 ##
+*
Index: tags/siscone-3.0.4/doc/.gitignore
===================================================================
--- tags/siscone-3.0.4/doc/.gitignore (revision 0)
+++ tags/siscone-3.0.4/doc/.gitignore (revision 420)
@@ -0,0 +1 @@
+/devel
Index: tags/siscone-3.0.4/doc
===================================================================
--- tags/siscone-3.0.4/doc (revision 419)
+++ tags/siscone-3.0.4/doc (revision 420)
Property changes on: tags/siscone-3.0.4/doc
___________________________________________________________________
Added: svn:ignore
## -0,0 +1 ##
+devel
Index: tags/siscone-3.0.4/INSTALL
===================================================================
--- tags/siscone-3.0.4/INSTALL (revision 0)
+++ tags/siscone-3.0.4/INSTALL (revision 420)
@@ -0,0 +1,62 @@
+Installation procedure:
+=======================
+
+You have two options to install the SISCone jet finder:
+1. use the standard configure/make/make install technique (recommended)
+2. use the 'old-fashionned' Makefile
+
+
+1. Installation through configure/make/make install
+---------------------------------------------------
+
+This is the recommended method for installing the SISCone library, headers
+and programs. For a 'standard' installation process, you just need to do
+$ ./configure
+$ make
+$ make install
+
+In short, 'configure' checks if your system has the required tools to
+build SISCone, 'make' actually does the build and 'make install'
+installs everything in the correct directories.
+
+Notes:
+
+- If you're using an svn version of SISCone, you first need to issue
+ ./autogen.sh
+ (to which you can pass configure's options, see below for details)
+ in order to generate the configure script from svn files.
+
+- The SISCone library is installed in ${prefix}/lib, the SISCone
+ development headers in ${prefix}/include/siscone and the useful
+ programs in ${prefix}/bin. The default prefix is /usr/local but
+ this can be changed by passing the --prefix=<your_preferred_prefix>
+ to the 'configure' script. Note that if you do not have sufficiently
+ write access you may need to issue 'make install' as root.
+ Also, if you install SISCone in a non standard location (e.g.
+ /usr/local/SISCone), do not forget to append ${prefix}/lib to your
+ LD_LIBARY_PATH.
+
+- By default, both shared (libsiscone.so) and static (libsiscone.a)
+ libraries are built and installed. You can disable one of them by
+ passing --disable-shared or --disable-static to 'configure'.
+
+
+2. Installation using the Makefiles
+-----------------------------------
+
+If you do not feel comfortable with the suggested installation
+procedure, it is still possible to install it using the old-fashionned
+'make' method. For that, you just need to tell 'make' to use
+makefile.static as a main Makefile. This is done typing
+$ make -f makefile.static
+
+This will build the siscone library as src/libsiscone.a and the
+various example programs in examples/ :
+- 'siscone' an application with options to tune it from the command line
+ (see main.cpp and options.h/cpp)
+- 'sample' another example (used in the html documentation (see doc/html))
+- 'test' a testing program (see src/test.cpp)
+- 'times' computes execution times and various statistics for 1 <= N <= 1000
+- mem_check a shell script for checking memory usage as a function of the
+ number of particles (requires google perftools).
+You also have access to the SISCone headers in the src folder.
Index: tags/siscone-3.0.4/COPYING
===================================================================
--- tags/siscone-3.0.4/COPYING (revision 0)
+++ tags/siscone-3.0.4/COPYING (revision 420)
@@ -0,0 +1,280 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+ 675 Mass Ave, Cambridge, MA 02139, USA
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The licenses for most software are designed to take away your
+freedom to share and change it. By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users. This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it. (Some other Free Software Foundation software is covered by
+the GNU Library General Public License instead.) You can apply it to
+your programs, too.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
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+this service if you wish), that you receive source code or can get it
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+
+ END OF TERMS AND CONDITIONS
Index: tags/siscone-3.0.4/CHECKLIST
===================================================================
--- tags/siscone-3.0.4/CHECKLIST (revision 0)
+++ tags/siscone-3.0.4/CHECKLIST (revision 420)
@@ -0,0 +1,227 @@
+List of tasks to perform to release a new version of SISCone
+
+======================================================================
+SISCone X.Y.Z release checklist
+----------------------------------------------------------------------
+X.Y.Z make a copy of this
+X.Y.Z run svn up
+X.Y,Z update version number by running ./setversion.sh <version>
+X.Y.Z include the release in NEWS
+X.Y.Z run doxygen
+X.Y.Z update the html doc
+ . announcement in index.html
+ . download link (and date+version) in download.html
+X.Y.Z mention the release in Changelog by adding
+ "Release of SISCone X.Y.Z"
+X.Y.Z make sure everything is committed
+X.Y.Z run 'make distcheck'
+X.Y.Z tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-X.Y.Z
+X.Y.Z copy the tarball to HepForge
+ scp siscone-X.Y.Z.tar.gz login.hepforge.org:~siscone/downloads/
+X.Y.Z update the HepForge pages
+ . backup 'devel', 'include', *.html in a vX.Y.(Z-1) folder
+ . check the header and footer in 'include'
+ . update the announcement in index.html
+ . update the download info in downloads.html
+ . copy the Doxygen doc and run ./webadapt.sh
+ . update release_notes.txt (and point downloads.html to it instead of NEWS)
+ Note: if some html fixes have been done on hepforge
+ backport them to the trunk
+
+X.Y.Z switch version number to X.Y.Z+1-devel
+X.Y.Z make sure everything is committed
+
+======================================================================
+SISCone 3.0.4 release checklist
+----------------------------------------------------------------------
+3.0.4 make a copy of this
+3.0.4 run svn up
+3.0.4 update version number by running ./setversion.sh <version>
+3.0.4 include the release in NEWS
+3.0.4 run doxygen
+3.0.4 update the html doc
+ . announcement in index.html
+ . download link (and date+version) in download.html
+3.0.4 mention the release in Changelog by adding
+ "Release of SISCone X.Y.Z"
+X.Y.Z make sure everything is committed
+X.Y.Z run 'make distcheck'
+X.Y.Z tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-X.Y.Z
+X.Y.Z copy the tarball to HepForge
+ scp siscone-X.Y.Z.tar.gz login.hepforge.org:~siscone/downloads/
+X.Y.Z update the HepForge pages
+ . backup 'devel', 'include', *.html in a vX.Y.(Z-1) folder
+ . check the header and footer in 'include'
+ . update the announcement in index.html
+ . update the download info in downloads.html
+ . copy the Doxygen doc and run ./webadapt.sh
+ . update release_notes.txt (and point downloads.html to it instead of NEWS)
+ Note: if some html fixes have been done on hepforge
+ backport them to the trunk
+
+X.Y.Z switch version number to X.Y.Z+1-devel
+X.Y.Z make sure everything is committed
+
+======================================================================
+SISCone 3.0.3 release checklist
+----------------------------------------------------------------------
+3.0.3 make a copy of this
+3.0.3 run svn up
+3.0.3 update version number by running ./setversion.sh 3.0.3 [new version of the script]
+3.0.3 include the release in NEWS
+3.0.3 run doxygen
+3.0.3 update the html doc
+ v announcement in index.html
+ v download link (and date+version) in download.html
+3.0.3 mention the release in Changelog by adding
+ "Release of SISCone X.Y.Z"
+3.0.3 make sure everything is committed
+3.0.3 run 'make distcheck'
+3.0.3 tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-3.0.3
+3.0.3 copy the tarball to HepForge
+ scp siscone-3.0.3.tar.gz login.hepforge.org:~siscone/downloads/
+3.0.3 update the HepForge pages
+ v backup 'devel', 'include', *.html in a v3.0.2 folder
+ v check the header and footer in 'include'
+ v update the announcement in index.html
+ v update the download info in downloads.html
+ v copy the Doxygen doc and run ./webadapt.sh
+ v update release_notes.txt (and point downloads.html to it instead of NEWS)
+3.0.3 switch version number to X.Y.Z+1-devel
+3.0.3 make sure everything is committed
+
+======================================================================
+SISCone 3.0.2 release checklist
+----------------------------------------------------------------------
+3.0.2 make a copy of this
+3.0.2 run svn up
+3.0.2 update version numbber in configure.ac
+3.0.2 update version number by running ./setversion.sh
+3.0.2 update version number in Doxyfile (should go in the script!)
+3.0.2 include the release in NEWS
+3.0.2 run doxygen
+3.0.2 update the html doc
+ . version number in each header [should be automated!]
+ . announcement in index.html
+ . download link (and date) in download.html
+3.0.2 mention the release in Changelog by adding
+ "Release of SISCone 3.0.2"
+3.0.2 make sure everything is committed
+3.0.2 run 'make distcheck'
+3.0.2 tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-3.0.2
+3.0.2 copy the tarball to HepForge
+ scp siscone-3.0.2.tar.gz login.hepforge.org:~siscone/downloads/
+3.0.2 update the HepForge pages
+ v backup 'devel', 'include', *.html in a v3.0.1 folder
+ v check the header and footer in 'include'
+ v update the announcement in index.html
+ v update the download info in downloads.html
+ v copy the Doxygen doc and run ./webadapt.sh
+ v update release_notes.txt (and point downloads.html to it instead of NEWS)
+ Note: some html fixes have been done on hepforge
+ backport them to the trunk
+
+3.0.2 switch version number to 3.0.3-devel
+3.0.3-devel make sure everything is committed
+
+======================================================================
+SISCone 3.0.1 release checklist
+----------------------------------------------------------------------
+3.0.1 make a copy of this
+3.0.1 run svn up
+3.0.1 update version numbber in configure.ac
+3.0.1 update version number by running ./setversion.sh
+3.0.1 update version number in Doxyfile (should go in the script!)
+3.0.1 include the release in NEWS
+3.0.1 run doxygen
+3.0.1 update the html doc
+ . version number in each header [should be automated!]
+ . announcement in index.html
+ . download link (and date) in download.html
+3.0.1 mention the release in Changelog by adding
+ "Release of SISCone X.Y.Z"
+3.0.1 make sure everything is committed
+3.0.1 run 'make distcheck'
+3.0.1 tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-3.0.1
+3.0.1 copy the tarball to HepForge
+ scp siscone-3.0.1.tar.gz login.hepforge.org:~siscone/downloads/
+3.0.1 update the HepForge pages
+ . backup 'devel', 'include', *.html in a vX.Y.Z folder
+ . check the header and footer in 'include'
+ . update the announcement in index.html
+ . update the download info in downloads.html
+ . copy the Doxygen doc and run ./webadapt.sh
+ . update release_notes.txt (and point downloads.html to it instead of NEWS)
+ Note: some html fixes have been done on hepforge
+ backport them to the trunk
+
+3.0.1 switch version number to X.Y.Z+1-devel
+3.0.1 make sure everything is committed
+
+======================================================================
+SISCone 3.0.0 release checklist
+----------------------------------------------------------------------
+3.0.0 make a copy of this
+3.0.0 run svn up
+3.0.0 update version number by running ./setversion.sh
+3.0.0 update version number in Doxyfile (should go in the script!)
+3.0.0 include the release in NEWS
+3.0.0 run doxygen
+3.0.0 update the html doc
+ . version number in each header [should be automated!]
+ . announcement in index.html
+ . download link (and date) in download.html
+3.0.0 mention the release in Changelog by adding
+ "Release of SISCone X.Y.Z"
+3.0.0 make sure everything is committed
+3.0.0 run 'make distcheck'
+3.0.0 tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-X.Y.Z
+3.0.0 copy the tarball to HepForge
+ scp siscone-X.Y.Z.tar.gz login.hepforge.org:~siscone/downloads/
+3.0.0 update the HepForge pages
+ . backup 'devel', 'include', *.html in a vX.Y.Z folder
+ . check the header and footer in 'include'
+ . update the announcement in index.html
+ . update the download info in downloads.html
+ . copy the Doxygen doc and run ./webadapt.sh
+ . update release_notes.txt (and point downloads.html to it instead of NEWS)
+3.0.0 switch version number to X.Y.Z+1-devel
+3.0.0 make sure everything is committed
+
+======================================================================
+SISCone 2.0.6 release checklist
+----------------------------------------------------------------------
+2.0.6 make a copy of this
+2.0.6 run svn up
+2.0.6 update version number by running ./setversion.sh
+2.0.6 update version number in Doxyfile (should go in the script!)
+2.0.6 include the release in NEWS
+2.0.6 run doxygen
+2.0.6 update the html doc
+ . version number in each header [should be automated!]
+ . announcement in index.html
+ . download link (and date) in download.html
+2.0.6 mention the release in Changelog by adding
+ "Release of SISCone X.Y.Z"
+2.0.6 run 'make distcheck'
+2.0.6 make sure everything is committed
+2.0.6 tag the release
+ svn cp . svn+ssh://login.hepforge.org/hepforge/svn/siscone/tags/siscone-2.0.6
+2.0.6 copy the tarball to HepForge
+ scp siscone-X.Y.Z.tar.gz login.hepforge.org:~siscone/downloads/
+2.0.6 update the HepForge pages
+ . backup 'devel', 'include', *.html in a vX.Y.Z folder
+ . check the header and footer in 'include'
+ . update the announcement in index.html
+ . update the download info in downloads.html
+ . copy the Doxygen doc and run ./webadapt.sh
+ . update release_notes.txt
+2.0.6 switch version number to X.Y.Z+1-devel
+2.0.6 make sure everything is committed
+
Index: tags/siscone-3.0.4/Makefile.am
===================================================================
--- tags/siscone-3.0.4/Makefile.am (revision 0)
+++ tags/siscone-3.0.4/Makefile.am (revision 420)
@@ -0,0 +1,14 @@
+SUBDIRS = siscone examples
+EXTRA_DIST = makefile.static Doxyfile
+
+# local macros for aclocal
+ACLOCAL_AMFLAGS = -I m4
+
+# AX_PREFIX_CONFIG_H leaves some files undeleted after a make distclean
+#
+# we could use DISTCLEAN=... here but this would also overwrite the defaults
+# So, instead, we use the (apparently recommended) -local target to extend
+# the default behaviour
+distclean-local: distclean-ax-prefix-config-h
+distclean-ax-prefix-config-h:
+ rm -f _configs.sed siscone/config.h
Index: tags/siscone-3.0.4/setversion.sh
===================================================================
--- tags/siscone-3.0.4/setversion.sh (revision 0)
+++ tags/siscone-3.0.4/setversion.sh (revision 420)
@@ -0,0 +1,45 @@
+#!/bin/bash
+#
+# Script to update the version number in the locations where it is
+# hard-coded.
+#
+# Usage:
+# ./setversion.sh <number>
+# The version number will be read from configure.ac
+
+
+if [ $# -ne 1 ]
+then
+ echo "Usage: scripts/set-version.sh version-number"
+ exit
+fi
+
+version=$1
+echo "------------ Will set SISCone version to $version -----------"
+
+echo
+echo "------------ Setting it in configure.ac ---------------------"
+sed -i.bak 's/^\(AC_INIT(\[.*\], \[\).*/\1'$version'])/' configure.ac
+diff configure.ac.bak configure.ac
+
+echo
+echo "------------ Setting it in Doxyfile -------------------------"
+sed -i.bak 's/^\(PROJECT_NUMBER.*=\).*/\1 '$version'/' Doxyfile
+diff Doxyfile.bak Doxyfile
+
+echo
+echo "------------ Setting it in documentation---------------------"
+for fn in algorithm.html download.html index.html perfs.html sm_issue.html usage.html; do
+ sed -i.bak 's/Version .*</Version '$version'</' doc/html/${fn}
+ diff doc/html/${fn}.bak doc/html/${fn}
+done
+
+echo
+echo "------------ Recommended ChangeLog entry --------------------"
+# NB: -e option of echo ensures that \t translates to a tab character
+echo -e "\t* configure.ac:"
+echo -e "\t* Doxyfile:"
+echo -e "\t* doc/html/*.html:"
+echo -e "\tchanged version to $version"
+
+
Property changes on: tags/siscone-3.0.4/setversion.sh
___________________________________________________________________
Added: svn:executable
## -0,0 +1 ##
+*
\ No newline at end of property
Index: tags/siscone-3.0.4/autogen.sh
===================================================================
--- tags/siscone-3.0.4/autogen.sh (revision 0)
+++ tags/siscone-3.0.4/autogen.sh (revision 420)
@@ -0,0 +1,138 @@
+#!/bin/sh
+# Run this to generate all the initial makefiles, etc.
+
+srcdir=`dirname $0`
+PKG_NAME="SISCone"
+
+DIE=0
+
+(autoconf --version) < /dev/null > /dev/null 2>&1 || {
+ echo
+ echo "**Error**: You must have \`autoconf' installed to."
+ echo "Download the appropriate package for your distribution,"
+ echo "or get the source tarball at ftp://ftp.gnu.org/pub/gnu/"
+ DIE=1
+}
+
+(grep "^AC_PROG_LIBTOOL" $srcdir/configure.ac >/dev/null) && {
+ (((libtool --version) < /dev/null > /dev/null 2>&1) ||
+ ((libtool -V) < /dev/null > /dev/null 2>&1)) ||
+ {
+ echo
+ echo "**Error**: You must have \`libtool' installed."
+ echo "Get ftp://ftp.gnu.org/pub/gnu/libtool-1.2d.tar.gz"
+ echo "(or a newer version if it is available)"
+ DIE=1
+ }
+}
+
+grep "^AM_GNU_GETTEXT" $srcdir/configure.ac >/dev/null && {
+ grep "sed.*POTFILES" $srcdir/configure.ac >/dev/null || \
+ (gettext --version) < /dev/null > /dev/null 2>&1 || {
+ echo
+ echo "**Error**: You must have \`gettext' installed."
+ echo "Get ftp://alpha.gnu.org/gnu/gettext-0.10.35.tar.gz"
+ echo "(or a newer version if it is available)"
+ DIE=1
+ }
+}
+
+(automake --version) < /dev/null > /dev/null 2>&1 || {
+ echo
+ echo "**Error**: You must have \`automake' installed."
+ echo "Get ftp://ftp.gnu.org/pub/gnu/automake-1.3.tar.gz"
+ echo "(or a newer version if it is available)"
+ DIE=1
+ NO_AUTOMAKE=yes
+}
+
+
+# if no automake, don't bother testing for aclocal
+test -n "$NO_AUTOMAKE" || (aclocal --version) < /dev/null > /dev/null 2>&1 || {
+ echo
+ echo "**Error**: Missing \`aclocal'. The version of \`automake'"
+ echo "installed doesn't appear recent enough."
+ echo "Get ftp://ftp.gnu.org/pub/gnu/automake-1.3.tar.gz"
+ echo "(or a newer version if it is available)"
+ DIE=1
+}
+
+if test "$DIE" -eq 1; then
+ exit 1
+fi
+
+if test -z "$*"; then
+ echo "**Warning**: I am going to run \`configure' with no arguments."
+ echo "If you wish to pass any to it, please specify them on the"
+ echo \`$0\'" command line."
+ echo
+fi
+
+case $CC in
+xlc )
+ am_opt=--include-deps;;
+esac
+
+for coin in `find $srcdir -name configure.ac -print`
+do
+ dr=`dirname $coin`
+ if test -f $dr/NO-AUTO-GEN; then
+ echo skipping $dr -- flagged as no auto-gen
+ else
+ echo processing $dr
+ #macrodirs=`sed -n -e 's,AM_ACLOCAL_INCLUDE(\(.*\)),\1,gp' < $coin`
+ macrodirs="m4"
+ ( cd $dr
+ aclocalinclude="$ACLOCAL_FLAGS -I ."
+ for k in $macrodirs; do
+ if test -d $k; then
+ aclocalinclude="$aclocalinclude -I $k"
+ ##else
+ ## echo "**Warning**: No such directory \`$k'. Ignored."
+ fi
+ done
+ if grep "^AM_GNU_GETTEXT" configure.ac >/dev/null; then
+ if grep "sed.*POTFILES" configure.ac >/dev/null; then
+ : do nothing -- we still have an old unmodified configure.ac
+ else
+ echo "Creating $dr/aclocal.m4 ..."
+ test -r $dr/aclocal.m4 || touch $dr/aclocal.m4
+ echo "Running gettextize... Ignore non-fatal messages."
+ echo "no" | gettextize --force --copy
+ echo "Making $dr/aclocal.m4 writable ..."
+ test -r $dr/aclocal.m4 && chmod u+w $dr/aclocal.m4
+ fi
+ fi
+ if grep "^AM_GNOME_GETTEXT" configure.ac >/dev/null; then
+ echo "Creating $dr/aclocal.m4 ..."
+ test -r $dr/aclocal.m4 || touch $dr/aclocal.m4
+ echo "Running gettextize... Ignore non-fatal messages."
+ echo "no" | gettextize --force --copy
+ echo "Making $dr/aclocal.m4 writable ..."
+ test -r $dr/aclocal.m4 && chmod u+w $dr/aclocal.m4
+ fi
+ if grep "^AC_PROG_LIBTOOL" configure.ac >/dev/null; then
+ echo "Running libtoolize..."
+ libtoolize --force --copy
+ fi
+ echo "Running aclocal $aclocalinclude ..."
+ aclocal $aclocalinclude
+ #if grep "^AM_CONFIG_HEADER" configure.ac >/dev/null; then
+ # echo "Running autoheader..."
+ # autoheader
+ #fi
+ echo "Running automake --gnu $am_opt ..."
+ automake --add-missing --gnu $am_opt
+ echo "Running autoconf ..."
+ autoconf
+ )
+ fi
+done
+
+if test x$NOCONFIGURE = x; then
+ echo Running $srcdir/configure $conf_flags "$@" ...
+ $srcdir/configure $conf_flags "$@" \
+ && echo Now type \`make\' to compile $PKG_NAME
+else
+ echo Skipping configure process.
+fi
Property changes on: tags/siscone-3.0.4/autogen.sh
___________________________________________________________________
Added: svn:executable
## -0,0 +1 ##
+*
\ No newline at end of property
Index: tags/siscone-3.0.4/NEWS
===================================================================
--- tags/siscone-3.0.4/NEWS (revision 0)
+++ tags/siscone-3.0.4/NEWS (revision 420)
@@ -0,0 +1,211 @@
+This file contains the history of SISCone releases. For each one,
+we give a short summary of the important changes from the previous
+version. If you want to see a more detailed list of changes, please
+read the ChangeLog file.
+
+SISCone version 3.0.4 (October 1 2018)
+=====================
+
+* Minor release, improved shared library handling by fixing
+ inter-dependences. (version to be included in FastJet>=3.3.2)
+
+SISCone version 3.0.3 (August 3 2016)
+=====================
+
+* Minor release, installing config.h to include flags decided at
+ configure time. (version to be included in FastJet>=3.2.1)
+
+SISCone version 3.0.2 (March 16 2016)
+=====================
+
+* Minor release, fixing a bug due to an array being used uninitialised
+ (no impact on results). Also replaced auto_ptr by unique_ptr when
+ supported by compiler (version to be included in FastJet>=3.2.0)
+
+SISCone version 3.0.1 (February 29 2016)
+=====================
+
+* Minor release, fixing a bug due to a rounding issue that occurs the
+ theta range in (rare) specific configurations where theta=pi in the
+ split-merge procedure for spherical SISCone
+
+SISCone version 3.0.0 (September 9 2014)
+=====================
+
+* Added the option of running SISCone with progressive removal,
+ corresponding to the following algorithm:
+
+ 1. search for stable cones
+ 2. declare the hardest stable cone a jet and remove its particles
+ from the list of remaining particles
+ 3. if there are some remaining particles, go back to 1.
+
+ Use Csiscone::compute_jets_progressive_removal(...) for this version
+ of SISCone
+
+ The scale used to determine which is the hardest stable cone can be
+ chosen amongst the same options as the scale used for the
+ split--merge step [SM_pttilde by default for the pp version of
+ SISCone, SM_Etilde for the spherical version]. Alternatively, a
+ user-defined scale choice can be provided using set_user_scale(...).
+
+ Version to be included in FastJet>=3.1.0
+
+SISCone version 2.0.6 (April 9 2013)
+=====================
+* Minor release fixing an issue concerning the installation of
+ configuration headers and bringing small updates in the autotools
+ build system (version to be included in FastJet>=3.0.4)
+
+SISCone version 2.0.5 (January 17 2012)
+=====================
+* Minor release bringing minor improvements to the build system
+ (version to be included in FastJet>=3.0.2)
+
+SISCone version 2.0.4 (November 25 2011)
+=====================
+* Minor release to remove a few gcc warnings when compiled with
+ high warning level (-ansi -pedantic -Wextra -Wshadow)
+ (version to be included in FastJet>=3.0.1)
+
+SISCone version 2.0.3 (October 5 2011)
+=====================
+* Minor release to fix a badly documented Etilde variable in the
+ spherical version of SISCone and to remove a few gcc warnings
+ (version to be included in FastJet 3.x)
+
+SISCone version 2.0.2 (May 2011)
+=====================
+* minor modifications to the build system
+ (version to be included in FastJet 3.x)
+
+SISCone version 2.0.1 (May 2009)
+=====================
+* enabled shared libraries by default
+ [that was the source of a bug in fastJet]
+* replaced _R with _radius to fix build problems on old OSX systems
+* fixed some syntax inconsistencies in Makefile.am's
+
+
+SISCone version 2.0.0 (Apr 2009)
+=====================
+* Added a spherical version of SISCone for use in e+e- collisions
+ This typically works in the same way as the pp version of SISCone
+ with the following remarks:
+ - the classes fot the spherical versions of SISCone are prefixed by
+ 'CSph' instead of 'C' (e.g. CSphMomentum CSphSISCone)
+ - the cone radius is defined as its half opening angle (particle
+ distances are also defined through the angle they define, or,
+ equivalently, as distances on the surface of a unit sphere)
+ - For ordering the protojets during the split--merge, we use
+ E_tilde defined as
+ / |p_i X p_J|^2 \
+ \sum_{i\in J} E_i | 1 + --------------- |
+ \ |p_i|^2 E_J^2 /
+ Note that the computation of the overlap uses the "plain" energy
+
+* Added a flag (Csiscone::use_pt_weighted_splitting) to modify the
+ split part of the split-merge procedure in such a way that a shared
+ particle i is assigned the one of the overlapping jets j=1,2 that
+ has the smaller value of DeltaR_{ij}/p_{tj}. This produces more
+ circular jets.
+
+* fixed a bug in the computation of the rapidity range in the
+ split-merge step
+
+* the protocones list now contains the full 4-momentum information
+ (rather than just eta and phi)
+
+* fixed bugs in example/test.cpp
+
+
+SISCone version 1.3.3 (Aug 2008)
+=====================
+* added bugfix for g++-4.3 (missing headers for "exit")
+
+
+SISCone version 1.3.2 (Mar 2008)
+=====================
+* VERSION and PROGRAM (or PACKAGE_NAME) are no longer accessible
+ directly because of potential conflicts with other packages.
+ You should use siscone_version() and siscone_package_name()
+ instead. (Thanks to Rolf Seuster)
+* allow the users to set their own default compilation flags.
+
+
+SISCone version 1.3.1 (Mar 2008)
+=====================
+* fixed some compilation issues under windows
+
+
+SISCone version 1.3.0 (Nov 2007)
+=====================
+
+* The main update in this new release is the switch to
+ 'autotools'. This means that instead of using the (static) Makefile
+ build process, you can now use the "standard ./configure; make; make
+ install" approach. See the INSTALL file for details.
+
+* added a 'siscone_area' example of how jet areas work within SISCone.
+
+
+SISCone version 1.2.0 (Jun 2007)
+=====================
+
+* 10-15% speed increase by introducing a tiling in the eta-phi plane
+ allowing for better overlap checking in the split--merge. This can
+ turn into a bigger effect for area computations.
+
+* implementing a 'jet area' class to compute active and/or passive
+ areas.
+
+* in examples:
+ - fix bug in the cmdline parsing (there was a segfault with
+ unrecognised long options),
+ - add "passes information" to the verbose output of the main siscone
+ program,
+ - solve problems with the 'time' example.
+
+
+SISCone version 1.1.1 (Mar 2007)
+=====================
+
+* The major upgrade is the use of pttilde (p-scheme pt) instead
+ of mt in the split--merge process. Indeed, we have noticed
+ that mt can lead to IR usafety in the case of two back-to-back
+ narrow-decay-width unstable particles (e.g. a pair of Higgs bosons).
+ See http://projects.hepforge.org/siscone/sm_issue.html for details.
+
+ Note that SISCone 1.1.1 allows the user to specify its choice for
+ the split-merge variable (we highly recommand the default choice)
+
+* The number of passes is now set to infinity (0) by default
+
+* Small minor changes in the 'siscone' command-line options
+
+
+SISCone version 1.1.0 (Mar 2007)
+=====================
+
+* dealt with colinearity issues
+
+* dealt with cocircularity situations (and related rounding errors)
+
+* use mt instead of pt in the split-merge
+ pt lead to some IR unsafety for events with momentum conservation
+
+* move all references to HEPForge
+
+* Important note: some typos have been fixed. As a consequence, some
+ end-user members have been affected:
+ - The contents of the jets is accessed through 'Cjet::contents'
+ instead of 'Cjet::content'
+ - The function called to save the jet contents to disk is
+ 'Csplit_merge::save_contents' instead of 'Csplit_merge::save_content'
+ Note that 'Csiscone::save_contents' is also valid.
+
+
+SISCone version 1.0.0 (Jan 2007)
+=====================
+
+This is the first stable release of siscone.
Index: tags/siscone-3.0.4/examples/test.cpp
===================================================================
--- tags/siscone-3.0.4/examples/test.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/test.cpp (revision 420)
@@ -0,0 +1,119 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: test.cpp //
+// Description: example program that implements tests with random particles //
+// and output various informations //
+// //
+// Note: for a usage example of SISCone, we advise looking at main.cpp //
+// or http://projects.hepforge.org/siscone/usage.html //
+// //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <time.h>
+#include <sys/time.h>
+#include <iostream>
+#include <math.h>
+
+#include "siscone/momentum.h"
+#include "siscone/siscone.h"
+
+#define N_default 500
+#define R 0.7
+#define F 0.75
+
+using namespace std;
+using namespace siscone;
+
+int main(int argc, char* argv[]){
+ vector<Cmomentum> particles;
+ Cmomentum *v;
+ double phi=0, eta=0, pt=1;
+ unsigned int N;
+
+ unsigned int i;
+ FILE *flux;
+
+ if (argc==1){
+ //cout << "using default number of particles" << endl;
+ N = N_default;
+ } else {
+ sscanf(argv[1], "%u", &N);
+ //cout << "using " << N << " particles" << endl;
+ }
+
+ // Initialise random number generator
+ timeval timestamp;
+ gettimeofday(&timestamp, NULL);
+ srand(timestamp.tv_usec);
+
+ // build particle list
+ cout << "build particle list" << endl;
+ flux = fopen("particles.dat", "w+");
+ for (i=0;i<N;i++){
+ // uniform eta between -5 and 5
+ eta = -5.0+10.0*rand()/(RAND_MAX+1.0);
+
+ // uniform azimuth
+ phi = 2.0*M_PI*rand()/(RAND_MAX+1.0);
+
+ // logarithmically uniform pt (between 1e-3 and 100 GeV)
+ pt = exp(log(0.001)+log(1e5)*rand()/(RAND_MAX+1.0));
+
+ particles.push_back(Cmomentum(pt*cos(phi), pt*sin(phi), pt*sinh(eta), pt*cosh(eta)));
+
+ fprintf(flux, "%e\t%e\t%e\n", particles[i].eta, particles[i].phi,particles[i].perp());
+ }
+ fclose(flux);
+
+ cout << "SISCone: initialise engine" << endl;
+ Csiscone siscone;
+
+ // cluster the event
+ cout << "cluster the event" << endl;
+ siscone.compute_jets(particles, R, F);
+
+#ifdef DEBUG_STABLE_CONES
+ cout << "hash_candidates=" << siscone.nb_hash_cones_total << " in " << siscone.nb_hash_occupied_total << " cells" << endl;
+#endif
+ // save list of stable cones
+ cout << "save stable cone results:" << endl;
+ unsigned int pass;
+ flux = fopen("protocones.dat", "w+");
+ for (pass=0;pass<siscone.protocones_list.size();pass++){
+ cout << " pass " << pass << " found " << siscone.protocones_list[pass].size()
+ << " stable cones" << endl;
+ fprintf(flux, "# pass %d: %u stable cones\n", pass,
+ (unsigned int) siscone.protocones_list[pass].size());
+ for (i=0;i<siscone.protocones_list[pass].size();i++){
+ v = &(siscone.protocones_list[pass][i]);
+ fprintf(flux, "%e\t%e\t%e\n", v->eta, v->phi, v->perp());
+ }
+ }
+ fclose(flux);
+
+ cout << "bye..." << endl;
+
+ return 0;
+}
Property changes on: tags/siscone-3.0.4/examples/test.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/examples/options.h
===================================================================
--- tags/siscone-3.0.4/examples/options.h (revision 0)
+++ tags/siscone-3.0.4/examples/options.h (revision 420)
@@ -0,0 +1,74 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: options.h //
+// Description: management of the cmdline options of the main program //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#ifndef __OPTIONS_H__
+#define __OPTIONS_H__
+
+#include "siscone/siscone.h"
+
+/**
+ * \class Coptions
+
+ * options for the 'cone' sample
+ */
+class Coptions{
+ public:
+ /// default ctor
+ Coptions();
+
+ /// default dtor
+ ~Coptions();
+
+ /// parse oprions
+ /// \param argc number of arguments from the command line
+ /// \param argv arguments from the command line
+ /// \return 1 on error, 0 on success
+ int parse_options(int argc, char **argv);
+
+ /// print the help message
+ int print_help();
+
+ /// print program version
+ int print_version();
+
+ // flags
+ int help_flag; ///< do we need to print the help message
+ int version_flag; ///< do we need to print the version description
+ int verbose_flag; ///< do we need to print the help message
+
+ // options
+ int N_stop; ///< maximum number of particle
+ double R; ///< cone radius
+ double f; ///< split/merge threshold
+ double ptmin; ///< minimal pT for jet candidates
+ char *ev_name; ///< event to read
+ int npass; ///< number of passes (0 for \infty)
+
+ /// variable for split-merge
+ siscone::Esplit_merge_scale SM_var;
+};
+
+#endif
Property changes on: tags/siscone-3.0.4/examples/options.h
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/examples/sample.cpp
===================================================================
--- tags/siscone-3.0.4/examples/sample.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/sample.cpp (revision 420)
@@ -0,0 +1,95 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: sample.cpp //
+// Description: example program for the Csiscone class (see documentation) //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <stdio.h>
+#include <iostream>
+#include <iomanip>
+#include "siscone/momentum.h"
+#include "siscone/siscone.h"
+
+#define R 0.7
+#define f 0.5
+#define f_alt 0.75
+
+using namespace std;
+using namespace siscone;
+
+int main(){
+ vector<Cmomentum> particles; // list of particles
+ Csiscone siscone; // main object for the cone algorithm
+ int i; // loop index
+ int N; // number of particles
+ double px,py,pz,E; // particles 4-momentum
+ char fline[512]; // line to read from a file
+
+ // read particles
+ FILE *flux;
+ flux = fopen("events/single-event.dat", "r");
+ if (flux==NULL){
+ cerr << "cannot read event" << endl;
+ return 1;
+ }
+
+ N=0;
+ while (fgets(fline, 512, flux)!=NULL){
+ if (fline[0]!='#'){ // skip lines beginning with '#'
+ if (sscanf(fline, "%le%le%le%le", &px, &py, &pz, &E)==4){
+ particles.push_back(Cmomentum(px, py, pz, E));
+ N++;
+ } else {
+ cout << "error in reading event file Giving up." << endl;
+ fclose(flux);
+ return 2;
+ }
+ }
+ }
+ fclose(flux);
+
+ // compute jets
+ // first compute with multiple passes (default)
+ i=siscone.compute_jets(particles, R, f);
+ cout << " " << i << " jets found in multi-pass run" << endl;
+
+ // then, recompute it with a different f
+ i=siscone.recompute_jets(f_alt);
+ cout << " " << i << " jets found with alternative f" << endl;
+
+ // one pass
+ i=siscone.compute_jets(particles, R, f, 1);
+ cout << " " << i << " jets found in single-pass run" << endl;
+
+ // show jets
+ vector<Cjet>::iterator it_j;
+ int i1;
+ fprintf(stdout, "# pT eta phi px py pz E \n");
+ for (it_j = siscone.jets.begin(), i1=0 ;
+ it_j != siscone.jets.end() ; it_j++, i1++){
+ fprintf(stdout, "Jet %3d: %10.3f %8.3f %8.3f %10.3f %10.3f %10.3f %10.3f\n",
+ i1, it_j->v.perp(), it_j->v.eta, it_j->v.phi, it_j->v.px, it_j->v.py, it_j->v.pz, it_j->v.E);
+ }
+
+ return 0;
+}
Property changes on: tags/siscone-3.0.4/examples/sample.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/examples/times.cpp
===================================================================
--- tags/siscone-3.0.4/examples/times.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/times.cpp (revision 420)
@@ -0,0 +1,124 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: times.cpp //
+// Description: example program that computes execution times //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <time.h>
+#include <sys/time.h>
+#include <iostream>
+#include <math.h>
+
+#include "siscone/momentum.h"
+#include "siscone/siscone.h"
+
+#define Nruns 32
+#define R 0.7
+#define f 0.5
+
+using namespace std;
+using namespace siscone;
+
+timeval time_start, time_end;
+
+// compute time spent between time_start and time_end
+int time_spent(){
+ timeval time_diff;
+
+ // compute different with initial time
+ time_diff.tv_sec = time_end.tv_sec-time_start.tv_sec;
+ if (time_end.tv_usec > time_start.tv_usec){
+ time_diff.tv_usec = time_end.tv_usec-time_start.tv_usec;
+ } else {
+ time_diff.tv_sec--;
+ time_diff.tv_usec = (1000000+time_end.tv_usec)-time_start.tv_usec;
+ }
+
+ return 1000000*time_diff.tv_sec+time_diff.tv_usec;
+}
+
+
+
+int main(){
+ vector<Cmomentum> particles;
+ Csiscone siscone;
+ double eta,phi;
+
+ // number of events and particles
+ int i, N;
+ int n_ev, part_inc;
+
+ // time statistics variables
+ int time_siscone;
+
+ // save files
+ FILE *flux;
+
+ // initialise random number generator
+ cout << "initialise random number generator" << endl;
+ timeval timestamp;
+
+ gettimeofday(&timestamp, NULL);
+ srand(timestamp.tv_usec);
+
+ flux = fopen("times.dat", "w+");
+
+ N = 1;
+ part_inc = 1;
+ do{
+ fprintf(stdout, "\r%5d particles\n", N);
+ time_siscone=0;
+
+ for (n_ev=0;n_ev<Nruns;n_ev++){
+ // build particle list
+ particles.clear();
+ for (i=0;i<N;i++){
+ eta = -3.0+6.0*rand()/(RAND_MAX+1.0);
+ phi = 2.0*M_PI*rand()/(RAND_MAX+1.0);
+ particles.push_back(Cmomentum(cos(phi), sin(phi), tanh(eta), 1.0));
+ }
+
+ // run siscone
+ gettimeofday(&time_start, NULL);
+ siscone.compute_jets(particles, R, f);
+ gettimeofday(&time_end, NULL);
+ time_siscone+=time_spent();
+ }
+
+ fprintf(flux, "%d\t%e\n", N, time_siscone/(1.0*Nruns));
+
+ N+=part_inc;
+ if (N==(part_inc<<3))
+ part_inc <<= 1;
+ // } while (N<=1024);
+ } while (N<=1024);
+
+ fclose(flux);
+ fprintf(stdout, "\n");
+
+ cout << "bye..." << endl;
+
+ return 0;
+}
Property changes on: tags/siscone-3.0.4/examples/times.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/examples/makefile.static
===================================================================
--- tags/siscone-3.0.4/examples/makefile.static (revision 0)
+++ tags/siscone-3.0.4/examples/makefile.static (revision 420)
@@ -0,0 +1,93 @@
+CC = g++
+OUT = siscone
+OUT_AREA = area
+OUT_TEST = test
+OUT_TIMES = times
+OUT_SAMPLE = sample
+OUT_SPHERE = spherical
+CFLAGS = -I.. -Wall -g -O3 -ffast-math
+
+LDFLAGS = -lm -L../siscone -lsiscone -L../siscone/spherical -lsiscone_spherical #-lprofiler -lpthread -ltcmalloc
+ifeq ($(shell whoami),salam)
+ # needed for Gavin to include tcmalloc
+ LDFLAGS += -L/ada1/lpthe/salam/software/local/lib
+endif
+
+OBJS_MAIN = options.o main.o
+OBJS_AREA = options.o area.o
+OBJS_TEST = test.o
+OBJS_TIMES = times.o
+OBJS_SAMPLE = sample.o
+OBJS_SPHERE = spherical.o
+
+OBJS_ALL = options.o main.o area.o sample.o test.o times.o spherical.o
+SRCS = $(patsubst %.o,%.cpp,$(OBJS_ALL))
+
+
+%.o: %.cpp %.h
+ $(CC) -c $(CFLAGS) $<
+
+%.o: %.cpp
+ $(CC) -c $(CFLAGS) $<
+
+all: main area sample test times spherical
+
+main: $(OBJS_MAIN)
+ $(CC) -o $(OUT) $(OBJS_MAIN) $(LDFLAGS)
+
+area: $(OBJS_AREA)
+ $(CC) -o $(OUT_AREA) $(OBJS_AREA) $(LDFLAGS)
+
+test: $(OBJS_TEST)
+ $(CC) -o $(OUT_TEST) $(OBJS_TEST) $(LDFLAGS)
+
+times: $(OBJS_TIMES)
+ $(CC) -o $(OUT_TIMES) $(OBJS_TIMES) $(LDFLAGS)
+
+sample: $(OBJS_SAMPLE)
+ $(CC) -o $(OUT_SAMPLE) $(OBJS_SAMPLE) $(LDFLAGS)
+
+spherical: $(OBJS_SPHERE)
+ $(CC) -o $(OUT_SPHERE) $(OBJS_SPHERE) $(LDFLAGS)
+
+.PHONY: clean
+
+clean:
+ rm -f *.o *~
+
+
+depend:
+ makedepend -I.. -Y -f makefile.static -- -- $(SRCS)
+# DO NOT DELETE
+
+options.o: options.h ../siscone/siscone.h ../siscone/protocones.h
+options.o: ../siscone/momentum.h ../siscone/reference.h ../siscone/geom_2d.h
+options.o: ../siscone/defines.h ../siscone/vicinity.h ../siscone/quadtree.h
+options.o: ../siscone/hash.h ../siscone/split_merge.h
+main.o: ../siscone/momentum.h ../siscone/reference.h ../siscone/geom_2d.h
+main.o: ../siscone/defines.h ../siscone/siscone.h ../siscone/protocones.h
+main.o: ../siscone/momentum.h ../siscone/vicinity.h ../siscone/quadtree.h
+main.o: ../siscone/hash.h ../siscone/split_merge.h options.h
+area.o: ../siscone/momentum.h ../siscone/reference.h ../siscone/geom_2d.h
+area.o: ../siscone/defines.h ../siscone/siscone.h ../siscone/protocones.h
+area.o: ../siscone/momentum.h ../siscone/vicinity.h ../siscone/quadtree.h
+area.o: ../siscone/hash.h ../siscone/split_merge.h ../siscone/area.h
+area.o: ../siscone/siscone.h options.h
+sample.o: ../siscone/momentum.h ../siscone/reference.h ../siscone/geom_2d.h
+sample.o: ../siscone/defines.h ../siscone/siscone.h ../siscone/protocones.h
+sample.o: ../siscone/momentum.h ../siscone/vicinity.h ../siscone/quadtree.h
+sample.o: ../siscone/hash.h ../siscone/split_merge.h
+test.o: ../siscone/momentum.h ../siscone/reference.h ../siscone/geom_2d.h
+test.o: ../siscone/defines.h ../siscone/siscone.h ../siscone/protocones.h
+test.o: ../siscone/momentum.h ../siscone/vicinity.h ../siscone/quadtree.h
+test.o: ../siscone/hash.h ../siscone/split_merge.h
+times.o: ../siscone/momentum.h ../siscone/reference.h ../siscone/geom_2d.h
+times.o: ../siscone/defines.h ../siscone/siscone.h ../siscone/protocones.h
+times.o: ../siscone/momentum.h ../siscone/vicinity.h ../siscone/quadtree.h
+times.o: ../siscone/hash.h ../siscone/split_merge.h
+spherical.o: ../siscone/spherical/momentum.h ../siscone/reference.h
+spherical.o: ../siscone/geom_2d.h ../siscone/defines.h ../siscone/defines.h
+spherical.o: ../siscone/spherical/siscone.h ../siscone/protocones.h
+spherical.o: ../siscone/momentum.h ../siscone/reference.h
+spherical.o: ../siscone/vicinity.h ../siscone/quadtree.h ../siscone/hash.h
+spherical.o: ../siscone/split_merge.h
Index: tags/siscone-3.0.4/examples/events/single-event.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/single-event.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/single-event.dat (revision 420)
@@ -0,0 +1,354 @@
+ -0.8807412236 -1.2331262152 -157.4313156510 157.4393822839
+ -0.0051712611 0.2381550800 -9.7396045662 9.7435168946
+ 0.0362280943 0.2694752057 -6.9243427525 6.9310844534
+ -0.2206628664 -0.1438198985 -0.6838608666 0.7460038429
+ 1.2716787521 1.0422298083 -6.1740167274 6.3907254797
+ -0.5695590845 -0.3627761836 -58.5430479911 58.5544811606
+ 0.2839991726 -0.4668202293 -49.6978846131 49.7097441380
+ 0.6510530003 1.3970949413 -62.7226079598 62.7485783532
+ 0.1434555273 -0.0312880942 -6.9382351613 6.9411919273
+ 0.4931562547 2.1627817414 -14.8865871635 15.0516040711
+ 0.2396813608 -0.0786236784 -1.9340954697 1.9554625817
+ 0.3355486441 0.0516402769 -0.8346540063 0.9118040941
+ -0.7853865645 -0.7810520475 -1.5367790662 1.8994852039
+ 0.1094889185 -0.1754670827 -0.6843130641 0.7283822313
+ -1.3395280577 -1.0677537402 -6.4527380155 6.7420362761
+ -0.4610425267 -0.0168193957 -0.8357253135 0.9647588756
+ -0.8586330562 -2.0252604440 -6.1169276419 6.5019392609
+ 0.1506846470 -0.2812835366 -0.3038867955 0.4622264166
+ 1.9980221318 1.1300023793 -3.4459595617 4.2454664891
+ 0.3272882037 -0.2364585949 0.1553473919 0.4545798417
+ 1.0076426762 1.4440286855 0.8523588299 1.9612643798
+ 0.0379998790 -0.3660104062 0.1528715253 0.4222050407
+ 10.0151541250 -2.3211630182 -15.0785563543 18.2503000364
+ 11.3598983026 -1.2325298244 -15.8349153125 19.5276839884
+ 1.6687709743 -1.1585763834 -2.8709909456 3.5198245120
+ 3.2014431503 -0.3128004506 -0.5513753788 3.3957985464
+ -30.7151484971 7.1828179172 -30.3287168815 43.7617176202
+ -7.5956115238 2.5973350872 -7.5388480549 11.0234901429
+ -0.9213602936 -0.5107772285 -0.1419601961 1.0721150358
+ -1.0794599717 -0.6668199287 0.5316879271 1.3827705828
+ -0.7396340255 -0.6182167240 2.5119449763 2.6941784942
+ 0.2074176533 0.2794277179 0.9960164767 1.0642511636
+ -0.1539166871 -0.7751679292 2.5738103560 2.7372826624
+ -1.3215623416 -0.6371922652 234.4350568153 234.4396892268
+ -1.0575338040 0.0953188302 464.9467453555 464.9479787674
+ -0.6276410883 0.2361957514 71.0828886604 71.0861889671
+ -0.2082020096 -0.4373362216 0.9028588667 1.0340430193
+ -0.0179791764 0.0902483897 0.2648461382 0.3131952817
+ 0.1020198339 0.1098009129 1.7787412558 1.7904928168
+ 2.0706642474 2.4044116603 1.0424047727 3.4696174649
+ 0.7973260719 0.5349870337 57.3601218239 57.3683274589
+ -0.2096823488 0.0247005810 -23.7890553577 23.7951971424
+ 0.3102511281 0.1319028264 -314.2349531398 314.2355280746
+ -0.2551007217 0.1414141961 -264.4206622484 264.4208599525
+ -0.0667217187 0.1675665310 -440.2993433749 440.2994024371
+ 0.1230808742 0.0544787546 -9.2334321211 9.2344131146
+ 0.0149244718 0.0926408620 -13.1527203128 13.1530550328
+ -0.7273456972 0.8103042163 -69.3094134240 69.3181065354
+ 1.3444919516 -0.0354346667 -75.6843009141 75.6962503634
+ -0.2673665474 -0.0908126999 -12.8334289873 12.8372937636
+ 0.3478059093 0.1156549525 -5.5306033046 5.5427356000
+ 0.1066857461 -0.0194790151 -1.0350365802 1.0407026486
+ 0.0216700641 -0.0151983847 -0.0808217620 0.0850455160
+ -0.0908971368 -0.1795934739 -2.1471276079 2.1565419240
+ 0.1619100903 0.1096391138 -5.1549916876 5.1605866621
+ 0.1658801571 -0.4323029725 -10.9719847384 10.9928382207
+ -0.0738683424 0.2189545272 -5.2858871411 5.2927762347
+ 0.6032480190 0.0236332859 -3.2008192361 3.2944425092
+ -0.0357683833 0.1856094526 -0.6235460716 0.6515673024
+ -0.3533710661 0.6295703546 -2.8607535473 2.9504475593
+ 0.0481173336 0.0105768278 -0.5957002119 0.5977339622
+ 0.2075827055 -0.0308763006 -0.7487101323 0.7775672240
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+ -0.0074119146 -0.0297613121 -58.9036529918 58.9036609767
+ -0.2811166895 0.8565449965 -1345.2132113785 1345.2138415713
+ -0.0217590821 0.0295680705 -1.4316647060 1.4321353144
+ -0.0411871732 -0.1433145865 -4.1950850614 4.1977344040
+ 0.0000161243 -0.0197893201 -18.6652813563 18.6652918468
+ -0.0037080800 -0.1644263966 -20.7846855998 20.7853363041
+ 0.1864447321 0.0253239348 0.0515967916 0.1951029695
+ 0.1036221868 -0.0670423838 -0.0340109532 0.1280194664
+ 0.4672472776 0.2236570795 -0.0501273890 0.5204375686
+ 0.1891841769 0.0409518465 0.0506236100 0.2000761265
+ 0.0261105832 0.0529552694 -0.0657671278 0.0883817754
+ 0.1618126437 0.0242326171 0.0023687129 0.1636342329
+ 0.3565264181 0.0124879620 9.3933918502 9.4011997783
+ 0.5033500838 -0.5007399100 16.8454871381 16.8610206829
+ -0.1398195181 0.0757052286 -118.9195521575 118.9196584511
+ 0.0018271729 -0.0111140989 -74.4314662452 74.4314670974
Index: tags/siscone-3.0.4/examples/events/Pythia-PtMin1000-LHC-10ev.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/Pythia-PtMin1000-LHC-10ev.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/Pythia-PtMin1000-LHC-10ev.dat (revision 420)
@@ -0,0 +1,5473 @@
+# output from
+# ./gen-events -lhc -ptmin 1000 -out ../data/Pythia-PtMin1000-LHC-1000ev.dat -nev 1000
+# Stamped by ./gen-events on 2/12/2005 at 22:22:34
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+#END
Index: tags/siscone-3.0.4/examples/events/Makefile.am
===================================================================
--- tags/siscone-3.0.4/examples/events/Makefile.am (revision 0)
+++ tags/siscone-3.0.4/examples/events/Makefile.am (revision 420)
@@ -0,0 +1 @@
+EXTRA_DIST = single-event.dat midpoint-irunsafety.dat two-collinear.dat
Index: tags/siscone-3.0.4/examples/events/Pythia-Z2jets-lhc-pileup-1ev.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/Pythia-Z2jets-lhc-pileup-1ev.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/Pythia-Z2jets-lhc-pileup-1ev.dat (revision 420)
@@ -0,0 +1,3616 @@
+# ./gen-events -Z2jets -lhc -pileup -out pippo -nev 1
+# Random generator sequence: 19780503
+# Stamped by ./gen-events on 17/08/2006 at 20:04:37
+#SUBSTART
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+ -0.0024939333 0.0055438178 0.0197330279 0.0206481478
+#END
Index: tags/siscone-3.0.4/examples/events/Pythia-Zp2jets-lhc-pileup-1ev.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/Pythia-Zp2jets-lhc-pileup-1ev.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/Pythia-Zp2jets-lhc-pileup-1ev.dat (revision 420)
@@ -0,0 +1,3134 @@
+# ./gen-events -Zp2jets -lhc -pileup -out pippo -nev 1
+# Random generator sequence: 19780503
+# Stamped by ./gen-events on 17/08/2006 at 20:17:31
+#SUBSTART
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+#END
Index: tags/siscone-3.0.4/examples/events/Pythia-dijet-ptmin100-lhc-pileup-1ev.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/Pythia-dijet-ptmin100-lhc-pileup-1ev.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/Pythia-dijet-ptmin100-lhc-pileup-1ev.dat (revision 420)
@@ -0,0 +1,3307 @@
+# ../../../pythia/gen-events -ptmin 100 -pileup -lhc -nev 30 -out Pythia-dijet-ptmin100-lhc-pileup-30ev.dat
+# Random generator sequence: 19780503
+# Stamped by ../../../pythia/gen-events on 23/08/2006 at 18:25:23
+#SUBSTART
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+ -0.2075903843 0.0304796577 -434.3625551762 434.3626058513
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+ 0.2074576996 -0.1332647366 21.6038392085 21.6056970848
+ -0.0213761632 -0.3170262685 29.8895436326 29.8915583560
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+ 0.0550366518 -0.0441084759 -1.1070785442 1.1093229889
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+ 0.0061125039 0.1482128240 -1.0065901670 1.0174616298
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+ -0.1137481023 -0.0841268217 -4.7668489513 4.7689479843
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+ -0.2741378513 -0.0863519961 23.4493082217 23.4514849016
+ 0.0798598960 0.7685933964 75.8384504232 75.8425154896
+ 0.1287150171 0.1050110676 9.0119864887 9.0135173685
+ 0.1527709096 -0.0231235240 6.6634423898 6.6652335391
+ -0.0994405619 -0.0826650556 8.4563471291 8.4573357924
+ -0.0129514207 -0.2067113393 17.0224417157 17.0237016915
+ 0.5854429357 0.3174027102 45.1473895113 45.1523008007
+ 0.1657956342 0.1233707429 10.0405523070 10.0426788838
+ 0.0927732778 -0.4370027253 19.7725632122 19.7776094168
+ -0.0169854937 -0.1484712213 9.9546088997 9.9557305385
+ -0.0329998175 -0.0109685452 0.5130544509 0.5142316273
+ -0.0180198979 -0.3352944341 8.4573842745 8.4640472495
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+ 0.0594454805 -0.3656573142 13.2904491123 13.2956111798
+ -0.0645067407 -0.0552828763 3.6764747038 3.6774561267
+ -0.0155775810 -0.0752306551 0.8029314467 0.8065985499
+ 0.0020224904 -0.2202271194 4.6949328940 4.7000956324
+ 0.0210268069 -0.0032647372 0.1136161000 0.1155915365
+ -0.1276892243 0.0937364327 1.0290871968 1.0412067592
+ 0.0230400538 0.0079552397 0.0455686626 0.0516781668
+ -0.4990637786 -0.1258269654 5.8157914437 5.8385209769
+ -0.0599863419 -0.0479550568 0.5119618738 0.5176900703
+ -0.1078217834 -0.0623841040 -0.0802077441 0.1481573340
+ 0.0329858889 0.0117336586 -0.0445429971 0.0566553281
+ -0.0042120079 -0.0089249911 0.0043292746 0.0107767850
+ 0.4437854217 -0.2434170862 -0.4643758283 0.6869077727
+ 0.2447013372 0.1179531108 0.1646735685 0.3469709640
+ -0.1132821072 -0.1006947007 0.1712834942 0.2679367068
+ 0.1788045206 0.1699117647 0.2930191933 0.4076531576
+ 0.0270992065 -0.2055747302 0.3842812565 0.4584181559
+ 0.0602935964 0.0890158741 0.0768323141 0.1321451781
+ 0.0696528691 0.1329862982 -0.0533073905 0.1593064831
+ 0.0000162854 -0.0528588383 -0.1152939303 0.1268335422
+ 0.0792675213 -0.1091156129 -0.0211254001 0.1365131475
+ 0.0130367070 -0.0499796049 2.1010759148 2.1017107119
+ -0.1864807060 -0.2650042297 24.2045509852 24.2067199490
+ -0.1637107915 0.0068238561 8.1876677980 8.1893071599
+ -0.1285508721 -0.0069016616 2.6288597266 2.6320099586
+#END
Index: tags/siscone-3.0.4/examples/events/midpoint-irunsafety.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/midpoint-irunsafety.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/midpoint-irunsafety.dat (revision 420)
@@ -0,0 +1,4 @@
+# R=0.7 is assumed
+400.0 0.0 0.0 400.0
+110.0 0.0 73.97603280415951055 132.5611309149182127
+90.0 0.0 216.1315626191298955 234.1214478858929349
Index: tags/siscone-3.0.4/examples/events/.gitignore
===================================================================
--- tags/siscone-3.0.4/examples/events/.gitignore (revision 0)
+++ tags/siscone-3.0.4/examples/events/.gitignore (revision 420)
@@ -0,0 +1,2 @@
+/Makefile.in
+/Makefile
Index: tags/siscone-3.0.4/examples/events/two-collinear.dat
===================================================================
--- tags/siscone-3.0.4/examples/events/two-collinear.dat (revision 0)
+++ tags/siscone-3.0.4/examples/events/two-collinear.dat (revision 420)
@@ -0,0 +1,2 @@
+ -0.8807412236 -1.2331262152 -157.4313156510 157.4393822839
+ -0.8807412236 -1.2331262152 -157.4313156510 157.4393822839
Index: tags/siscone-3.0.4/examples/events
===================================================================
--- tags/siscone-3.0.4/examples/events (revision 419)
+++ tags/siscone-3.0.4/examples/events (revision 420)
Property changes on: tags/siscone-3.0.4/examples/events
___________________________________________________________________
Added: svn:ignore
## -0,0 +1,3 ##
+Makefile.in
+
+Makefile
Index: tags/siscone-3.0.4/examples/.gitignore
===================================================================
--- tags/siscone-3.0.4/examples/.gitignore (revision 0)
+++ tags/siscone-3.0.4/examples/.gitignore (revision 420)
@@ -0,0 +1,11 @@
+/*.dat
+/test
+/sample
+/times
+/siscone
+/Makefile.in
+/Makefile
+/.deps
+/siscone_area
+/spherical
+/.libs
Index: tags/siscone-3.0.4/examples/jets.gri
===================================================================
--- tags/siscone-3.0.4/examples/jets.gri (revision 0)
+++ tags/siscone-3.0.4/examples/jets.gri (revision 420)
@@ -0,0 +1,74 @@
+set x size 20
+set y size 8
+set font size 14
+set symbol size 0.1
+
+.pi. = {rpn pi}
+.pim. = {rpn pi -1.0 *}
+.pi2. = {rpn pi 2.0 *}
+
+set x type linear
+set x axis -10 10 1.0
+set y axis .pim. .pi. 1.0
+set x name "$\eta$"
+set y name "$\phi$"
+set clip on
+draw axes
+
+open "particles.dat"
+read columns x=1 y=2
+set color black
+set symbol size 0.15
+draw symbol 0
+
+open "jets.dat"
+# read the number of jets
+read .nb_jets. * *
+
+# draw jet centres
+read columns x=1 y=2 z=4
+.ic. = 0
+set color black
+set symbol size 0.5
+while {rpn .ic. .nb_jets. >}
+ .x. = {rpn x .ic. @}
+ .y. = {rpn y .ic. @}
+ draw symbol 1 at .x. .y.
+ .ic. += 1
+end while
+
+# draw jet contents
+set symbol size 0.2
+while {rpn .ic. ..num_col_data.. >}
+ .x. = {rpn x .ic. @}
+ .y. = {rpn y .ic. @}
+ .z. = {rpn z .ic. @}
+ if {rpn .z. 0 ==}
+ set color red
+ else if {rpn .z. 1 ==}
+ set color green
+ else if {rpn .z. 2 ==}
+ set color blue
+ else if {rpn .z. 3 ==}
+ set color cyan
+ else if {rpn .z. 4 ==}
+ set color magenta
+ else if {rpn .z. 5 ==}
+ set color yellow
+ else if {rpn .z. 6 ==}
+ set color black
+ else if {rpn .z. 7 ==}
+ set color orange
+ else if {rpn .z. 8 ==}
+ set color brown
+ else if {rpn .z. 9 ==}
+ set color LightGray
+ else if {rpn .z. 10 ==}
+ set color ForestGreen
+ else
+ set color skyblue
+ end if
+ .z. = {rpn .z. 11 +}
+ draw symbol .z. at .x. .y.
+ .ic. += 1
+end while
Index: tags/siscone-3.0.4/examples/main.cpp
===================================================================
--- tags/siscone-3.0.4/examples/main.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/main.cpp (revision 420)
@@ -0,0 +1,117 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: main.cpp //
+// Description: main program that runs siscone from the command line //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <stdio.h>
+#include <iostream>
+#include <cstdlib>
+#include "siscone/momentum.h"
+#include "siscone/siscone.h"
+#include "options.h"
+
+using namespace std;
+using namespace siscone;
+
+int main(int argc, char *argv[]){
+ vector<Cmomentum> particles;
+ Csiscone siscone;
+ int i,N;
+ double px,py,pz,E;
+ Coptions opts;
+ char fline[512];
+
+ if (opts.parse_options(argc, argv))
+ exit(1);
+
+ // deal with help message
+ if (opts.help_flag){
+ opts.print_help();
+ exit(0);
+ }
+
+ // deal with version flag
+ if (opts.version_flag){
+ opts.print_version();
+ exit(0);
+ }
+
+ // various files used to read input data and store results
+ FILE *flux;
+ FILE *fpart;
+
+ // read particles
+ if (opts.verbose_flag) cout << "reading particles" << endl;
+ flux = fopen(opts.ev_name, "r");
+ if (flux==NULL){
+ cerr << "cannot read event '" << opts.ev_name << "'" << endl;
+ cerr << "specify the event to read using the -e option" << endl;
+ return 1;
+ }
+
+ N=0;
+ fpart = fopen("particles.dat", "w+");
+ while ((opts.N_stop!=0) && (fgets(fline, 512, flux)!=NULL)){
+ if (fline[0]!='#'){ // skip lines beginning with '#'
+ if (sscanf(fline, "%le%le%le%le", &px, &py, &pz, &E)==4){
+ particles.push_back(Cmomentum(px, py, pz, E));
+ fprintf(fpart, "%e\t%e\n", particles[N].eta, particles[N].phi);
+ N++;
+ opts.N_stop--;
+ } else {
+ cout << "error in reading event file Giving up." << endl;
+ fclose(flux);
+ fclose(fpart);
+ exit(2);
+ }
+ }
+ }
+ fclose(flux);
+ fclose(fpart);
+ if (opts.verbose_flag)
+ cout << " working with " << N << " particles" << endl;
+
+ // compute jets
+ if (opts.verbose_flag) cout << "computing jet contents" << endl;
+ i=siscone.compute_jets(particles, opts.R, opts.f, opts.npass, opts.ptmin, opts.SM_var);
+ if (opts.verbose_flag){
+ unsigned int pass;
+ for (pass=0;pass<siscone.protocones_list.size();pass++)
+ cout << " pass " << pass << " found " << siscone.protocones_list[pass].size()
+ << " stable cones" << endl;
+ cout << " Final result: " << i << " jets found" << endl;
+ }
+
+ // save jets
+ if (opts.verbose_flag)
+ cout << "saving result" << endl;
+ flux = fopen("jets.dat", "w+");
+ siscone.save_contents(flux);
+ fclose(flux);
+
+ if (opts.verbose_flag)
+ cout << "bye..." << endl;
+
+ return 0;
+}
Property changes on: tags/siscone-3.0.4/examples/main.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/examples/Makefile.am
===================================================================
--- tags/siscone-3.0.4/examples/Makefile.am (revision 0)
+++ tags/siscone-3.0.4/examples/Makefile.am (revision 420)
@@ -0,0 +1,35 @@
+# we only install the 'siscone' and 'area' programs
+# since the remaining ones are samples and test programs
+# we leave them in the 'examples' folder.
+noinst_PROGRAMS = siscone siscone_area test times sample spherical
+
+EXTRA_DIST = options.h makefile.static
+
+SUBDIRS = events
+
+# specify sources for each program to build
+siscone_SOURCES = options.cpp main.cpp
+siscone_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+siscone_LDADD = ../siscone/libsiscone.la
+
+siscone_area_SOURCES = options.cpp area.cpp
+siscone_area_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+siscone_area_LDADD = ../siscone/libsiscone.la
+
+test_SOURCES = test.cpp
+test_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+test_LDADD = ../siscone/libsiscone.la
+
+times_SOURCES = times.cpp
+times_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+times_LDADD = ../siscone/libsiscone.la
+
+sample_SOURCES = sample.cpp
+sample_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+sample_LDADD = ../siscone/libsiscone.la
+
+spherical_SOURCES = spherical.cpp
+spherical_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir)/.. -I..
+spherical_LDADD = ../siscone/spherical/libsiscone_spherical.la\
+ ../siscone/libsiscone.la
+
Index: tags/siscone-3.0.4/examples/area.cpp
===================================================================
--- tags/siscone-3.0.4/examples/area.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/area.cpp (revision 420)
@@ -0,0 +1,123 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: main.cpp //
+// Description: main program that runs siscone from the command line //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: 171 $//
+// $Date:: 2007-06-19 10:26:05 -0400 (Tue, 19 Jun 2007) $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <stdio.h>
+#include <iostream>
+#include <cstdlib>
+#include "siscone/momentum.h"
+#include "siscone/siscone.h"
+#include "siscone/area.h"
+#include "options.h"
+
+using namespace std;
+using namespace siscone;
+
+int main(int argc, char *argv[]){
+ vector<Cmomentum> particles;
+ Carea siscone_with_area;
+ int i,N;
+ double px,py,pz,E;
+ Coptions opts;
+ char fline[512];
+
+ if (opts.parse_options(argc, argv))
+ exit(1);
+
+ // deal with help message
+ if (opts.help_flag){
+ opts.print_help();
+ exit(0);
+ }
+
+ // deal with version flag
+ if (opts.version_flag){
+ opts.print_version();
+ exit(0);
+ }
+
+ // various files used to read input data and store results
+ FILE *flux;
+ FILE *fpart;
+
+ // read particles
+ if (opts.verbose_flag) cout << "reading particles" << endl;
+ flux = fopen(opts.ev_name, "r");
+ if (flux==NULL){
+ cerr << "cannot read event" << endl;
+ return 1;
+ }
+
+ N=0;
+ fpart = fopen("particles.dat", "w+");
+ while ((opts.N_stop!=0) && (fgets(fline, 512, flux)!=NULL)){
+ if (fline[0]!='#'){ // skip lines beginning with '#'
+ if (sscanf(fline, "%le%le%le%le", &px, &py, &pz, &E)==4){
+ particles.push_back(Cmomentum(px, py, pz, E));
+ fprintf(fpart, "%e\t%e\n", particles[N].eta, particles[N].phi);
+ N++;
+ opts.N_stop--;
+ } else {
+ cout << "error in reading event file Giving up." << endl;
+ fclose(flux);
+ fclose(fpart);
+ exit(2);
+ }
+ }
+ }
+ fclose(flux);
+ fclose(fpart);
+ if (opts.verbose_flag)
+ cout << " working with " << N << " particles" << endl;
+
+ // compute jets
+ if (opts.verbose_flag) cout << "computing jet contents" << endl;
+ i=siscone_with_area.compute_areas(particles, opts.R, opts.f, opts.npass, opts.SM_var);
+ if (opts.verbose_flag){
+ unsigned int pass;
+ for (pass=0;pass<siscone_with_area.protocones_list.size();pass++)
+ cout << " pass " << pass << " found " << siscone_with_area.protocones_list[pass].size()
+ << " stable cones" << endl;
+ cout << " Final result: " << i << " jets found" << endl;
+ }
+
+ // save jets
+ if (opts.verbose_flag)
+ cout << "saving result" << endl;
+ flux = fopen("jets_with_area.dat", "w+");
+ vector<Cjet_area>::iterator ja;
+ for (ja=siscone_with_area.jet_areas.begin();ja!=siscone_with_area.jet_areas.end();ja++){
+ fprintf(flux, "%e\t%e\t%e\t%e\t%e\n",
+ ja->v.perp(), ja->v.eta, ja->v.phi,
+ ja->active_area, ja->passive_area);
+ }
+
+ fclose(flux);
+
+ if (opts.verbose_flag)
+ cout << "bye..." << endl;
+
+ return 0;
+}
Index: tags/siscone-3.0.4/examples/mem_check
===================================================================
--- tags/siscone-3.0.4/examples/mem_check (revision 0)
+++ tags/siscone-3.0.4/examples/mem_check (revision 420)
@@ -0,0 +1,48 @@
+#!/bin/bash
+
+# this assumes that
+# - you have pprof, sed, dc and awk
+# - you have linked test with google profiler libraries (see src/Makefile)
+get_mem_usage_event(){
+ echo $i;
+ HEAPPROFILE=hp ./test $i
+ heap_file=`ls -1 *.heap | tail -n 1`
+ pprof --text --alloc_space --files ./test $heap_file | grep "??" > m.dat
+ mem_used=`awk '{print $4}' m.dat`
+}
+
+save_to_file(){
+ echo $i" "$mem_usage" "$mem_usage2 >> mem_usage.dat
+}
+
+#rm mem_usage.dat
+
+get_mem_usage(){
+ mem_usage=0.0
+ mem_usage2=0.0
+ for (( j=0 ; j<$N_runs ; j++ )); do
+ get_mem_usage_event
+ mem_usage=`echo "6 k $mem_usage $mem_used + p" | dc`
+ mem_usage2=`echo "6 k $mem_usage2 $mem_used $mem_used * + p" | dc`
+ done
+ mem_usage=`echo "6 k $mem_usage $N_runs / p" | dc`
+ mem_usage2=`echo "6 k $mem_usage2 $N_runs / $mem_usage $mem_usage * - p" | dc`
+ save_to_file
+}
+
+N_runs=1000
+for (( i=10 ; i<100 ; i+=10 )); do
+ get_mem_usage
+done
+N_runs=100
+for (( i=100 ; i<1000 ; i+=50 )); do
+ get_mem_usage
+done
+N_runs=10
+for (( i=1000 ; i<5001 ; i+=500 )); do
+ get_mem_usage
+done
+#N_runs=5
+#for (( i=6000 ; i<6001 ; i+=500 )); do
+# get_mem_usage
+#done
Property changes on: tags/siscone-3.0.4/examples/mem_check
___________________________________________________________________
Added: svn:executable
## -0,0 +1 ##
+*
\ No newline at end of property
Index: tags/siscone-3.0.4/examples/spherical.cpp
===================================================================
--- tags/siscone-3.0.4/examples/spherical.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/spherical.cpp (revision 420)
@@ -0,0 +1,97 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: spherical.cpp //
+// Description: example program for the CSphsiscone class (spherical SISCone)//
+// This file is part of the SISCone project. //
+// WARNING: this is not the main SISCone trunk but //
+// an adaptation to spherical coordinates //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: 227 $//
+// $Date:: 2008-06-12 20:00:44 -0400 (Thu, 12 Jun 2008) $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include <stdio.h>
+#include <iostream>
+#include <iomanip>
+#include "siscone/spherical/momentum.h"
+#include "siscone/spherical/siscone.h"
+
+#define R 0.7
+#define f 0.5
+#define f_alt 0.75
+
+using namespace std;
+using namespace siscone_spherical;
+
+int main(){
+ vector<CSphmomentum> particles; // list of particles
+ CSphsiscone siscone; // main object for the cone algorithm
+ int i; // loop index
+ int N; // number of particles
+ double px,py,pz,E; // particles 4-momentum
+ char fline[512]; // line to read from a file
+
+ // read particles
+ FILE *flux;
+ flux = fopen("events/single-event.dat", "r");
+ if (flux==NULL){
+ cerr << "cannot read event" << endl;
+ return 1;
+ }
+
+ N=0;
+ while (fgets(fline, 512, flux)!=NULL){
+ if (fline[0]!='#'){ // skip lines beginning with '#'
+ if (sscanf(fline, "%le%le%le%le", &px, &py, &pz, &E)==4){
+ particles.push_back(CSphmomentum(px, py, pz, E));
+ N++;
+ } else {
+ cout << "error in reading event file Giving up." << endl;
+ fclose(flux);
+ return 2;
+ }
+ }
+ }
+ fclose(flux);
+
+ // compute jets
+ // first compute with multiple passes (default)
+ i=siscone.compute_jets(particles, R, f);
+ cout << " " << i << " jets found in multi-pass run" << endl;
+
+ // then, recompute it with a different f
+ i=siscone.recompute_jets(f_alt);
+ cout << " " << i << " jets found with alternative f" << endl;
+
+ // one pass
+ i=siscone.compute_jets(particles, R, f, 1);
+ cout << " " << i << " jets found in single-pass run" << endl;
+
+ // show jets
+ vector<CSphjet>::iterator it_j;
+ int i1;
+ fprintf(stdout, "# theta phi px py pz E \n");
+ for (it_j = siscone.jets.begin(), i1=0 ;
+ it_j != siscone.jets.end() ; it_j++, i1++){
+ fprintf(stdout, "Jet %3d: %8.3f %8.3f %10.3f %10.3f %10.3f %10.3f\n",
+ i1, it_j->v._theta, it_j->v._phi, it_j->v.px, it_j->v.py, it_j->v.pz, it_j->v.E);
+ }
+
+ return 0;
+}
Index: tags/siscone-3.0.4/examples/options.cpp
===================================================================
--- tags/siscone-3.0.4/examples/options.cpp (revision 0)
+++ tags/siscone-3.0.4/examples/options.cpp (revision 420)
@@ -0,0 +1,242 @@
+///////////////////////////////////////////////////////////////////////////////
+// File: options.cpp //
+// Description: management of the cmdline options of the main program //
+// This file is part of the SISCone project. //
+// For more details, see http://projects.hepforge.org/siscone //
+// //
+// Copyright (c) 2006 Gavin Salam and Gregory Soyez //
+// //
+// This program is free software; you can redistribute it and/or modify //
+// it under the terms of the GNU General Public License as published by //
+// the Free Software Foundation; either version 2 of the License, or //
+// (at your option) any later version. //
+// //
+// This program is distributed in the hope that it will be useful, //
+// but WITHOUT ANY WARRANTY; without even the implied warranty of //
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
+// GNU General Public License for more details. //
+// //
+// You should have received a copy of the GNU General Public License //
+// along with this program; if not, write to the Free Software //
+// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA //
+// //
+// $Revision:: $//
+// $Date:: $//
+///////////////////////////////////////////////////////////////////////////////
+
+#include "options.h"
+#include <string.h>
+#include <getopt.h>
+#include <iostream>
+
+using namespace std;
+using namespace siscone;
+
+#define N_DEFAULT -1
+#define R_DEFAULT 0.7
+#define THRESHOLD_DEFAULT 0.5
+#define PTMIN_DEFAULT 0.0
+#define NPASS_DEFAULT 0
+#define DEFAULT_EVENT "events/single-event.dat"
+#define SM_DEFAULT SM_pttilde
+
+/*******************************************
+ * Coptions implementation *
+ * options for the 'cone' sample *
+ *******************************************/
+
+// default ctor
+//--------------
+Coptions::Coptions(){
+ // set default flags values
+ help_flag=0;
+ version_flag=0;
+ verbose_flag=1;
+
+ // set default options values
+ N_stop = N_DEFAULT;
+ R = R_DEFAULT;
+ f = THRESHOLD_DEFAULT;
+ npass = NPASS_DEFAULT;
+ ev_name = NULL;
+ SM_var = SM_DEFAULT;
+}
+
+
+// default dtor
+//--------------
+Coptions::~Coptions(){
+ if (ev_name!=NULL)
+ delete[] ev_name;
+}
+
+
+// parse oprions
+// - argc number of arguments from the command line
+// - argv arguments from the command line
+// return 1 on error, 0 on success
+//---------------------------------
+int Coptions::parse_options(int argc, char **argv){
+ int opt_param;
+ int option_index;
+ bool stop=false;
+
+ // browse the command-line options{
+ static struct option siscone_options[]={
+ // options that set a flag
+ {"verbose", no_argument, &verbose_flag, 1},
+ {"quiet", no_argument, &verbose_flag, 0},
+ {"help", no_argument, &help_flag , 1},
+ {"version", no_argument, &version_flag, 1},
+ // options setting parameters
+ {"number", required_argument, NULL, 'N'},
+ {"radius", required_argument, NULL, 'R'},
+ {"fraction", required_argument, NULL, 'f'},
+ {"ptmin", required_argument, NULL, 'p'},
+ {"npass", required_argument, NULL, 'n'},
+ {"event", required_argument, NULL, 'e'},
+ {"sm", required_argument, NULL, 's'},
+ {0,0,0,0}
+ };
+
+
+ do{
+ // getopt_long stores the option index here.
+ option_index=0;
+
+ // retreive options
+ opt_param = getopt_long(argc, argv, "hvqN:R:f:p:n:e:s:",
+ siscone_options, &option_index);
+
+ // Detect the end of the options.
+ if (opt_param == -1)
+ stop=true;
+
+ // branch according to 'opt_param'
+ switch (opt_param){
+ case 'h': help_flag = 1; break; // help
+ case 'v': verbose_flag = 1; break; // verbose
+ case 'q': verbose_flag = 0; break; // quiet
+ case 'N': // max number of paprticles
+ sscanf(optarg, "%d", &N_stop);
+ if (N_stop<=0){
+ cout << "Warning: the specified number of particles must be positive. Using default one" << endl;
+ N_stop = N_DEFAULT;
+ }
+ break;
+ case 'R':
+ sscanf(optarg, "%lf", &R);
+ if (R<=0){
+ cout << "Warning: the specified cone radius must be positive. Using default one" << endl;
+ R = R_DEFAULT;
+ }
+ break;
+ case 'f':
+ sscanf(optarg, "%lf", &f);
+ if ((f<0) || (f>1)){
+ cout << "Warning: the specified split/merge threshold must be in [0,1]. Using default one" << endl;
+ f = THRESHOLD_DEFAULT;
+ }
+ break;
+ case 'p':
+ sscanf(optarg, "%lf", &ptmin);
+ if (ptmin<0){
+ cout << "Warning: the specified minimal pT must be non-negative. Using default one" << endl;
+ ptmin = PTMIN_DEFAULT;
+ }
+ break;
+ case 'n': // max number of paprticles
+ sscanf(optarg, "%d", &npass);
+ if (npass<0){
+ cout << "Warning: the specified number of passes must be non negative. Using default one" << endl;
+ npass = NPASS_DEFAULT;
+ }
+ break;
+ case 'e':
+ if (ev_name==NULL){
+ ev_name = new char[strlen(optarg)+1];
+ strcpy(ev_name, optarg);
+ }
+ break;
+ case 's':
+ char tmp[512];
+ strcpy(tmp, optarg);
+ if (strcmp(tmp, "pttilde")==0){
+ SM_var = SM_pttilde;
+ } else if (strcmp(tmp, "mt")==0){
+ SM_var = SM_mt;
+ } else if (strcmp(tmp, "pt")==0){
+ SM_var = SM_pt;
+ } else if (strcmp(tmp, "Et")==0){
+ SM_var = SM_Et;
+ } else {
+ cout << "Warning: the specified varible for split--merge is not valid (should be pttilde, pt, mt or Et). Using pttilde as the default one." << endl;
+ SM_var = SM_pttilde;
+ }
+ break;
+ case 0:
+ case -1:
+ break;
+ case '?':
+ fprintf(stderr, "Giving up.\n");
+ return 1;
+ break;
+ default:
+ if (!help_flag){
+ fprintf(stderr, "unrecognized option %c. Giving up.\n", opt_param);
+ return 1;
+ }
+ }
+ } while (!stop);
+
+ if (ev_name==NULL){
+ ev_name = new char[strlen(DEFAULT_EVENT)+1];
+ strcpy(ev_name, DEFAULT_EVENT);
+ }
+
+ return 0;
+}
+
+
+// print the help message
+//------------------------
+int Coptions::print_help(){
+ cout << siscone_package_name() << " " << siscone_version() << endl;
+ cout << "Usage: " << siscone_package_name() << " <args>" << endl;
+ cout << endl;
+ cout << "Here is an exhaustive list of the arguments:" << endl;
+ cout << "Parameters control (with default values):" << endl;
+ cout << " -n <val>, --number=<val> : set the maximum number of particles allowed (all)" << endl;
+ cout << " -R <val>, --radius=<val> : set the radius (" << R_DEFAULT << ")" << endl;
+ cout << " -f <val>, --fraction=<val>: set the overlap parameter (" << THRESHOLD_DEFAULT << ")" << endl;
+ cout << " -p <val>, --ptmin=<val> : set the minimal pT for protojets (" << PTMIN_DEFAULT << ")" << endl;
+ cout << " -n <val>, --npass=<val> : set the maximal number of passes (0 for no limit) (" << NPASS_DEFAULT << ")" << endl;
+ cout << " -e <val>, --event=<val> : set the event filename (" << DEFAULT_EVENT << ")" << endl;
+ cout << " -s <val>, --sm=<val> : variable for split--merge: pttilde, mt, pt or Et (pttilde)" << endl;
+ cout << endl;
+ cout << "Output flags" << endl;
+ cout << " --version : show version information" << endl;
+ cout << " -h, --help : show this message" << endl;
+ cout << " -v, --verbose: be verbose (on by default)" << endl;
+ cout << " -q, --quiet : be quiet" << endl;
+ cout << endl;
+
+ return 0;
+}
+
+
+// print program version
+//-----------------------
+int Coptions::print_version(){
+ cout << siscone_package_name() << " " << siscone_version() << endl;
+ cout << "Copyright (C) 2006." << endl;
+ cout << siscone_package_name() << " comes with NO WARRANTY," << endl;
+ cout << "to the extent permitted by law." << endl;
+ cout << "You may redistribute copies of " << siscone_package_name() << endl;
+ cout << "under the terms of the GNU General Public License." << endl;
+ cout << "For more information about these matters," << endl;
+ cout << "see the files named COPYING." << endl;
+ cout << "Please send bugs or comments to AUTHORS" << endl;
+
+ return 0;
+}
Property changes on: tags/siscone-3.0.4/examples/options.cpp
___________________________________________________________________
Added: svn:keywords
## -0,0 +1 ##
+Date Rev
\ No newline at end of property
Index: tags/siscone-3.0.4/examples
===================================================================
--- tags/siscone-3.0.4/examples (revision 419)
+++ tags/siscone-3.0.4/examples (revision 420)
Property changes on: tags/siscone-3.0.4/examples
___________________________________________________________________
Added: svn:ignore
## -0,0 +1,17 ##
+*.dat
+test
+sample
+times
+siscone
+
+Makefile.in
+
+Makefile
+
+.deps
+
+siscone_area
+
+spherical
+
+.libs
Index: tags/siscone-3.0.4/m4/ax_prefix_config_h.m4
===================================================================
--- tags/siscone-3.0.4/m4/ax_prefix_config_h.m4 (revision 0)
+++ tags/siscone-3.0.4/m4/ax_prefix_config_h.m4 (revision 420)
@@ -0,0 +1,215 @@
+# ===========================================================================
+# http://autoconf-archive.cryp.to/ax_prefix_config_h.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_PREFIX_CONFIG_H [(OUTPUT-HEADER [,PREFIX [,ORIG-HEADER]])]
+#
+# DESCRIPTION
+#
+# This is a new variant from ac_prefix_config_ this one will use a
+# lowercase-prefix if the config-define was starting with a
+# lowercase-char, e.g. "#define const", "#define restrict", or "#define
+# off_t", (and this one can live in another directory, e.g.
+# testpkg/config.h therefore I decided to move the output-header to be the
+# first arg)
+#
+# takes the usual config.h generated header file; looks for each of the
+# generated "#define SOMEDEF" lines, and prefixes the defined name (ie.
+# makes it "#define PREFIX_SOMEDEF". The result is written to the output
+# config.header file. The PREFIX is converted to uppercase for the
+# conversions.
+#
+# Defaults:
+#
+# OUTPUT-HEADER = $PACKAGE-config.h
+# PREFIX = $PACKAGE
+# ORIG-HEADER, from AM_CONFIG_HEADER(config.h)
+#
+# Your configure.ac script should contain both macros in this order, and
+# unlike the earlier variations of this prefix-macro it is okay to place
+# the AX_PREFIX_CONFIG_H call before the AC_OUTPUT invokation.
+#
+# Example:
+#
+# AC_INIT(config.h.in) # config.h.in as created by "autoheader"
+# AM_INIT_AUTOMAKE(testpkg, 0.1.1) # makes #undef VERSION and PACKAGE
+# AM_CONFIG_HEADER(config.h) # prep config.h from config.h.in
+# AX_PREFIX_CONFIG_H(mylib/_config.h) # prep mylib/_config.h from it..
+# AC_MEMORY_H # makes "#undef NEED_MEMORY_H"
+# AC_C_CONST_H # makes "#undef const"
+# AC_OUTPUT(Makefile) # creates the "config.h" now
+# # and also mylib/_config.h
+#
+# if the argument to AX_PREFIX_CONFIG_H would have been omitted then the
+# default outputfile would have been called simply "testpkg-config.h", but
+# even under the name "mylib/_config.h" it contains prefix-defines like
+#
+# #ifndef TESTPKG_VERSION
+# #define TESTPKG_VERSION "0.1.1"
+# #endif
+# #ifndef TESTPKG_NEED_MEMORY_H
+# #define TESTPKG_NEED_MEMORY_H 1
+# #endif
+# #ifndef _testpkg_const
+# #define _testpkg_const _const
+# #endif
+#
+# and this "mylib/_config.h" can be installed along with other
+# header-files, which is most convenient when creating a shared library
+# (that has some headers) where some functionality is dependent on the
+# OS-features detected at compile-time. No need to invent some
+# "mylib-confdefs.h.in" manually. :-)
+#
+# Note that some AC_DEFINEs that end up in the config.h file are actually
+# self-referential - e.g. AC_C_INLINE, AC_C_CONST, and the AC_TYPE_OFF_T
+# say that they "will define inline|const|off_t if the system does not do
+# it by itself". You might want to clean up about these - consider an
+# extra mylib/conf.h that reads something like:
+#
+# #include <mylib/_config.h>
+# #ifndef _testpkg_const
+# #define _testpkg_const const
+# #endif
+#
+# and then start using _testpkg_const in the header files. That is also a
+# good thing to differentiate whether some library-user has starting to
+# take up with a different compiler, so perhaps it could read something
+# like this:
+#
+# #ifdef _MSC_VER
+# #include <mylib/_msvc.h>
+# #else
+# #include <mylib/_config.h>
+# #endif
+# #ifndef _testpkg_const
+# #define _testpkg_const const
+# #endif
+#
+# LICENSE
+#
+# Copyright (c) 2008 Guido U. Draheim <guidod@gmx.de>
+# Copyright (c) 2008 Marten Svantesson
+# Copyright (c) 2008 Gerald Point <Gerald.Point@labri.fr>
+#
+# This program is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation; either version 2 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+AC_DEFUN([AX_PREFIX_CONFIG_H],[dnl
+AC_BEFORE([AC_CONFIG_HEADERS],[$0])dnl
+AC_CONFIG_COMMANDS([ifelse($1,,$PACKAGE-config.h,$1)],[dnl
+AS_VAR_PUSHDEF([_OUT],[ac_prefix_conf_OUT])dnl
+AS_VAR_PUSHDEF([_DEF],[ac_prefix_conf_DEF])dnl
+AS_VAR_PUSHDEF([_PKG],[ac_prefix_conf_PKG])dnl
+AS_VAR_PUSHDEF([_LOW],[ac_prefix_conf_LOW])dnl
+AS_VAR_PUSHDEF([_UPP],[ac_prefix_conf_UPP])dnl
+AS_VAR_PUSHDEF([_INP],[ac_prefix_conf_INP])dnl
+m4_pushdef([_script],[conftest.prefix])dnl
+m4_pushdef([_symbol],[m4_cr_Letters[]m4_cr_digits[]_])dnl
+_OUT=`echo ifelse($1, , $PACKAGE-config.h, $1)`
+_DEF=`echo _$_OUT | sed -e "y:m4_cr_letters:m4_cr_LETTERS[]:" -e "s/@<:@^m4_cr_Letters@:>@/_/g"`
+_PKG=`echo ifelse($2, , $PACKAGE, $2)`
+_LOW=`echo _$_PKG | sed -e "y:m4_cr_LETTERS-:m4_cr_letters[]_:"`
+_UPP=`echo $_PKG | sed -e "y:m4_cr_letters-:m4_cr_LETTERS[]_:" -e "/^@<:@m4_cr_digits@:>@/s/^/_/"`
+_INP=`echo "ifelse($3,,,$3)" | sed -e 's/ *//'`
+if test ".$_INP" = "."; then
+ for ac_file in : $CONFIG_HEADERS; do test "_$ac_file" = _: && continue
+ case "$ac_file" in
+ *.h) _INP=$ac_file ;;
+ *)
+ esac
+ test ".$_INP" != "." && break
+ done
+fi
+if test ".$_INP" = "."; then
+ case "$_OUT" in
+ */*) _INP=`basename "$_OUT"`
+ ;;
+ *-*) _INP=`echo "$_OUT" | sed -e "s/@<:@_symbol@:>@*-//"`
+ ;;
+ *) _INP=config.h
+ ;;
+ esac
+fi
+if test -z "$_PKG" ; then
+ AC_MSG_ERROR([no prefix for _PREFIX_PKG_CONFIG_H])
+else
+ if test ! -f "$_INP" ; then if test -f "$srcdir/$_INP" ; then
+ _INP="$srcdir/$_INP"
+ fi fi
+ AC_MSG_NOTICE(creating $_OUT - prefix $_UPP for $_INP defines)
+ if test -f $_INP ; then
+ echo "s/^@%:@undef *\\(@<:@m4_cr_LETTERS[]_@:>@\\)/@%:@undef $_UPP""_\\1/" > _script
+ echo "s/^@%:@undef *\\(@<:@m4_cr_letters@:>@\\)/@%:@undef $_LOW""_\\1/" >> _script
+ echo "s/^@%:@def[]ine *\\(@<:@m4_cr_LETTERS[]_@:>@@<:@_symbol@:>@*\\)\\(.*\\)/@%:@ifndef $_UPP""_\\1 \\" >> _script
+ echo "@%:@def[]ine $_UPP""_\\1 \\2 \\" >> _script
+ echo "@%:@endif/" >>_script
+ echo "s/^@%:@def[]ine *\\(@<:@m4_cr_letters@:>@@<:@_symbol@:>@*\\)\\(.*\\)/@%:@ifndef $_LOW""_\\1 \\" >> _script
+ echo "@%:@define $_LOW""_\\1 \\2 \\" >> _script
+ echo "@%:@endif/" >> _script
+ # now executing _script on _DEF input to create _OUT output file
+ echo "@%:@ifndef $_DEF" >$tmp/pconfig.h
+ echo "@%:@def[]ine $_DEF 1" >>$tmp/pconfig.h
+ echo ' ' >>$tmp/pconfig.h
+ echo /'*' $_OUT. Generated automatically at end of configure. '*'/ >>$tmp/pconfig.h
+
+ sed -f _script $_INP >>$tmp/pconfig.h
+ echo ' ' >>$tmp/pconfig.h
+ echo '/* once:' $_DEF '*/' >>$tmp/pconfig.h
+ echo "@%:@endif" >>$tmp/pconfig.h
+ if cmp -s $_OUT $tmp/pconfig.h 2>/dev/null; then
+ AC_MSG_NOTICE([$_OUT is unchanged])
+ else
+ ac_dir=`AS_DIRNAME(["$_OUT"])`
+ AS_MKDIR_P(["$ac_dir"])
+ rm -f "$_OUT"
+ mv $tmp/pconfig.h "$_OUT"
+ fi
+ cp _script _configs.sed
+ else
+ AC_MSG_ERROR([input file $_INP does not exist - skip generating $_OUT])
+ fi
+ rm -f conftest.*
+fi
+m4_popdef([_symbol])dnl
+m4_popdef([_script])dnl
+AS_VAR_POPDEF([_INP])dnl
+AS_VAR_POPDEF([_UPP])dnl
+AS_VAR_POPDEF([_LOW])dnl
+AS_VAR_POPDEF([_PKG])dnl
+AS_VAR_POPDEF([_DEF])dnl
+AS_VAR_POPDEF([_OUT])dnl
+],[PACKAGE="$PACKAGE"])])
+
+dnl implementation note: a bug report (31.5.2005) from Marten Svantesson points
+dnl out a problem where `echo "\1"` results in a Control-A. The unix standard
+dnl http://www.opengroup.org/onlinepubs/000095399/utilities/echo.html
+dnl defines all backslash-sequences to be inherently non-portable asking
+dnl for replacement mit printf. Some old systems had problems with that
+dnl one either. However, the latest libtool (!) release does export an $ECHO
+dnl (and $echo) that does the right thing - just one question is left: what
+dnl was the first version to have it? Is it greater 2.58 ?
Index: tags/siscone-3.0.4/Doxyfile
===================================================================
--- tags/siscone-3.0.4/Doxyfile (revision 0)
+++ tags/siscone-3.0.4/Doxyfile (revision 420)
@@ -0,0 +1,2355 @@
+# Doxyfile 1.8.8
+
+# This file describes the settings to be used by the documentation system
+# doxygen (www.doxygen.org) for a project.
+#
+# All text after a double hash (##) is considered a comment and is placed in
+# front of the TAG it is preceding.
+#
+# All text after a single hash (#) is considered a comment and will be ignored.
+# The format is:
+# TAG = value [value, ...]
+# For lists, items can also be appended using:
+# TAG += value [value, ...]
+# Values that contain spaces should be placed between quotes (\" \").
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+
+# This tag specifies the encoding used for all characters in the config file
+# that follow. The default is UTF-8 which is also the encoding used for all text
+# before the first occurrence of this tag. Doxygen uses libiconv (or the iconv
+# built into libc) for the transcoding. See http://www.gnu.org/software/libiconv
+# for the list of possible encodings.
+# The default value is: UTF-8.
+
+DOXYFILE_ENCODING = UTF-8
+
+# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by
+# double-quotes, unless you are using Doxywizard) that should identify the
+# project for which the documentation is generated. This name is used in the
+# title of most generated pages and in a few other places.
+# The default value is: My Project.
+
+PROJECT_NAME = SISCone
+
+# The PROJECT_NUMBER tag can be used to enter a project or revision number. This
+# could be handy for archiving the generated documentation or if some version
+# control system is used.
+
+PROJECT_NUMBER = 3.0.4
+
+# Using the PROJECT_BRIEF tag one can provide an optional one line description
+# for a project that appears at the top of each page and should give viewer a
+# quick idea about the purpose of the project. Keep the description short.
+
+PROJECT_BRIEF =
+
+# With the PROJECT_LOGO tag one can specify an logo or icon that is included in
+# the documentation. The maximum height of the logo should not exceed 55 pixels
+# and the maximum width should not exceed 200 pixels. Doxygen will copy the logo
+# to the output directory.
+
+PROJECT_LOGO =
+
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
+# into which the generated documentation will be written. If a relative path is
+# entered, it will be relative to the location where doxygen was started. If
+# left blank the current directory will be used.
+
+OUTPUT_DIRECTORY = doc/devel
+
+# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create 4096 sub-
+# directories (in 2 levels) under the output directory of each output format and
+# will distribute the generated files over these directories. Enabling this
+# option can be useful when feeding doxygen a huge amount of source files, where
+# putting all generated files in the same directory would otherwise causes
+# performance problems for the file system.
+# The default value is: NO.
+
+CREATE_SUBDIRS = NO
+
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES = NO
+
+# The OUTPUT_LANGUAGE tag is used to specify the language in which all
+# documentation generated by doxygen is written. Doxygen will use this
+# information to generate all constant output in the proper language.
+# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Catalan, Chinese,
+# Chinese-Traditional, Croatian, Czech, Danish, Dutch, English (United States),
+# Esperanto, Farsi (Persian), Finnish, French, German, Greek, Hungarian,
+# Indonesian, Italian, Japanese, Japanese-en (Japanese with English messages),
+# Korean, Korean-en (Korean with English messages), Latvian, Lithuanian,
+# Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese, Romanian, Russian,
+# Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish, Swedish, Turkish,
+# Ukrainian and Vietnamese.
+# The default value is: English.
+
+OUTPUT_LANGUAGE = English
+
+# If the BRIEF_MEMBER_DESC tag is set to YES doxygen will include brief member
+# descriptions after the members that are listed in the file and class
+# documentation (similar to Javadoc). Set to NO to disable this.
+# The default value is: YES.
+
+BRIEF_MEMBER_DESC = YES
+
+# If the REPEAT_BRIEF tag is set to YES doxygen will prepend the brief
+# description of a member or function before the detailed description
+#
+# Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
+# brief descriptions will be completely suppressed.
+# The default value is: YES.
+
+REPEAT_BRIEF = YES
+
+# This tag implements a quasi-intelligent brief description abbreviator that is
+# used to form the text in various listings. Each string in this list, if found
+# as the leading text of the brief description, will be stripped from the text
+# and the result, after processing the whole list, is used as the annotated
+# text. Otherwise, the brief description is used as-is. If left blank, the
+# following values are used ($name is automatically replaced with the name of
+# the entity):The $name class, The $name widget, The $name file, is, provides,
+# specifies, contains, represents, a, an and the.
+
+ABBREVIATE_BRIEF =
+
+# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
+# doxygen will generate a detailed section even if there is only a brief
+# description.
+# The default value is: NO.
+
+ALWAYS_DETAILED_SEC = NO
+
+# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
+# inherited members of a class in the documentation of that class as if those
+# members were ordinary class members. Constructors, destructors and assignment
+# operators of the base classes will not be shown.
+# The default value is: NO.
+
+INLINE_INHERITED_MEMB = NO
+
+# If the FULL_PATH_NAMES tag is set to YES doxygen will prepend the full path
+# before files name in the file list and in the header files. If set to NO the
+# shortest path that makes the file name unique will be used
+# The default value is: YES.
+
+FULL_PATH_NAMES = YES
+
+# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
+# Stripping is only done if one of the specified strings matches the left-hand
+# part of the path. The tag can be used to show relative paths in the file list.
+# If left blank the directory from which doxygen is run is used as the path to
+# strip.
+#
+# Note that you can specify absolute paths here, but also relative paths, which
+# will be relative from the directory where doxygen is started.
+# This tag requires that the tag FULL_PATH_NAMES is set to YES.
+
+STRIP_FROM_PATH =
+
+# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
+# path mentioned in the documentation of a class, which tells the reader which
+# header file to include in order to use a class. If left blank only the name of
+# the header file containing the class definition is used. Otherwise one should
+# specify the list of include paths that are normally passed to the compiler
+# using the -I flag.
+
+STRIP_FROM_INC_PATH =
+
+# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
+# less readable) file names. This can be useful is your file systems doesn't
+# support long names like on DOS, Mac, or CD-ROM.
+# The default value is: NO.
+
+SHORT_NAMES = NO
+
+# If the JAVADOC_AUTOBRIEF tag is set to YES then doxygen will interpret the
+# first line (until the first dot) of a Javadoc-style comment as the brief
+# description. If set to NO, the Javadoc-style will behave just like regular Qt-
+# style comments (thus requiring an explicit @brief command for a brief
+# description.)
+# The default value is: NO.
+
+JAVADOC_AUTOBRIEF = YES
+
+# If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first
+# line (until the first dot) of a Qt-style comment as the brief description. If
+# set to NO, the Qt-style will behave just like regular Qt-style comments (thus
+# requiring an explicit \brief command for a brief description.)
+# The default value is: NO.
+
+QT_AUTOBRIEF = NO
+
+# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a
+# multi-line C++ special comment block (i.e. a block of //! or /// comments) as
+# a brief description. This used to be the default behavior. The new default is
+# to treat a multi-line C++ comment block as a detailed description. Set this
+# tag to YES if you prefer the old behavior instead.
+#
+# Note that setting this tag to YES also means that rational rose comments are
+# not recognized any more.
+# The default value is: NO.
+
+MULTILINE_CPP_IS_BRIEF = NO
+
+# If the INHERIT_DOCS tag is set to YES then an undocumented member inherits the
+# documentation from any documented member that it re-implements.
+# The default value is: YES.
+
+INHERIT_DOCS = YES
+
+# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce a
+# new page for each member. If set to NO, the documentation of a member will be
+# part of the file/class/namespace that contains it.
+# The default value is: NO.
+
+SEPARATE_MEMBER_PAGES = NO
+
+# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen
+# uses this value to replace tabs by spaces in code fragments.
+# Minimum value: 1, maximum value: 16, default value: 4.
+
+TAB_SIZE = 8
+
+# This tag can be used to specify a number of aliases that act as commands in
+# the documentation. An alias has the form:
+# name=value
+# For example adding
+# "sideeffect=@par Side Effects:\n"
+# will allow you to put the command \sideeffect (or @sideeffect) in the
+# documentation, which will result in a user-defined paragraph with heading
+# "Side Effects:". You can put \n's in the value part of an alias to insert
+# newlines.
+
+ALIASES =
+
+# This tag can be used to specify a number of word-keyword mappings (TCL only).
+# A mapping has the form "name=value". For example adding "class=itcl::class"
+# will allow you to use the command class in the itcl::class meaning.
+
+TCL_SUBST =
+
+# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources
+# only. Doxygen will then generate output that is more tailored for C. For
+# instance, some of the names that are used will be different. The list of all
+# members will be omitted, etc.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_FOR_C = NO
+
+# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or
+# Python sources only. Doxygen will then generate output that is more tailored
+# for that language. For instance, namespaces will be presented as packages,
+# qualified scopes will look different, etc.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_JAVA = NO
+
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
+# sources. Doxygen will then generate output that is tailored for Fortran.
+# The default value is: NO.
+
+OPTIMIZE_FOR_FORTRAN = NO
+
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
+# sources. Doxygen will then generate output that is tailored for VHDL.
+# The default value is: NO.
+
+OPTIMIZE_OUTPUT_VHDL = NO
+
+# Doxygen selects the parser to use depending on the extension of the files it
+# parses. With this tag you can assign which parser to use for a given
+# extension. Doxygen has a built-in mapping, but you can override or extend it
+# using this tag. The format is ext=language, where ext is a file extension, and
+# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
+# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
+# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
+# Fortran. In the later case the parser tries to guess whether the code is fixed
+# or free formatted code, this is the default for Fortran type files), VHDL. For
+# instance to make doxygen treat .inc files as Fortran files (default is PHP),
+# and .f files as C (default is Fortran), use: inc=Fortran f=C.
+#
+# Note For files without extension you can use no_extension as a placeholder.
+#
+# Note that for custom extensions you also need to set FILE_PATTERNS otherwise
+# the files are not read by doxygen.
+
+EXTENSION_MAPPING =
+
+# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
+# according to the Markdown format, which allows for more readable
+# documentation. See http://daringfireball.net/projects/markdown/ for details.
+# The output of markdown processing is further processed by doxygen, so you can
+# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
+# case of backward compatibilities issues.
+# The default value is: YES.
+
+MARKDOWN_SUPPORT = YES
+
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
+# The default value is: YES.
+
+AUTOLINK_SUPPORT = YES
+
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
+# to include (a tag file for) the STL sources as input, then you should set this
+# tag to YES in order to let doxygen match functions declarations and
+# definitions whose arguments contain STL classes (e.g. func(std::string);
+# versus func(std::string) {}). This also make the inheritance and collaboration
+# diagrams that involve STL classes more complete and accurate.
+# The default value is: NO.
+
+BUILTIN_STL_SUPPORT = NO
+
+# If you use Microsoft's C++/CLI language, you should set this option to YES to
+# enable parsing support.
+# The default value is: NO.
+
+CPP_CLI_SUPPORT = NO
+
+# Set the SIP_SUPPORT tag to YES if your project consists of sip (see:
+# http://www.riverbankcomputing.co.uk/software/sip/intro) sources only. Doxygen
+# will parse them like normal C++ but will assume all classes use public instead
+# of private inheritance when no explicit protection keyword is present.
+# The default value is: NO.
+
+SIP_SUPPORT = NO
+
+# For Microsoft's IDL there are propget and propput attributes to indicate
+# getter and setter methods for a property. Setting this option to YES will make
+# doxygen to replace the get and set methods by a property in the documentation.
+# This will only work if the methods are indeed getting or setting a simple
+# type. If this is not the case, or you want to show the methods anyway, you
+# should set this option to NO.
+# The default value is: YES.
+
+IDL_PROPERTY_SUPPORT = YES
+
+# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
+# tag is set to YES, then doxygen will reuse the documentation of the first
+# member in the group (if any) for the other members of the group. By default
+# all members of a group must be documented explicitly.
+# The default value is: NO.
+
+DISTRIBUTE_GROUP_DOC = NO
+
+# Set the SUBGROUPING tag to YES to allow class member groups of the same type
+# (for instance a group of public functions) to be put as a subgroup of that
+# type (e.g. under the Public Functions section). Set it to NO to prevent
+# subgrouping. Alternatively, this can be done per class using the
+# \nosubgrouping command.
+# The default value is: YES.
+
+SUBGROUPING = YES
+
+# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions
+# are shown inside the group in which they are included (e.g. using \ingroup)
+# instead of on a separate page (for HTML and Man pages) or section (for LaTeX
+# and RTF).
+#
+# Note that this feature does not work in combination with
+# SEPARATE_MEMBER_PAGES.
+# The default value is: NO.
+
+INLINE_GROUPED_CLASSES = NO
+
+# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions
+# with only public data fields or simple typedef fields will be shown inline in
+# the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO, structs, classes, and unions are shown on a separate page (for HTML and
+# Man pages) or section (for LaTeX and RTF).
+# The default value is: NO.
+
+INLINE_SIMPLE_STRUCTS = NO
+
+# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or
+# enum is documented as struct, union, or enum with the name of the typedef. So
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
+# with name TypeT. When disabled the typedef will appear as a member of a file,
+# namespace, or class. And the struct will be named TypeS. This can typically be
+# useful for C code in case the coding convention dictates that all compound
+# types are typedef'ed and only the typedef is referenced, never the tag name.
+# The default value is: NO.
+
+TYPEDEF_HIDES_STRUCT = NO
+
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can be
+# an expensive process and often the same symbol appears multiple times in the
+# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
+# doxygen will become slower. If the cache is too large, memory is wasted. The
+# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
+# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
+# symbols. At the end of a run doxygen will report the cache usage and suggest
+# the optimal cache size from a speed point of view.
+# Minimum value: 0, maximum value: 9, default value: 0.
+
+LOOKUP_CACHE_SIZE = 0
+
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+
+# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
+# documentation are documented, even if no documentation was available. Private
+# class members and static file members will be hidden unless the
+# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
+# Note: This will also disable the warnings about undocumented members that are
+# normally produced when WARNINGS is set to YES.
+# The default value is: NO.
+
+EXTRACT_ALL = NO
+
+# If the EXTRACT_PRIVATE tag is set to YES all private members of a class will
+# be included in the documentation.
+# The default value is: NO.
+
+EXTRACT_PRIVATE = NO
+
+# If the EXTRACT_PACKAGE tag is set to YES all members with package or internal
+# scope will be included in the documentation.
+# The default value is: NO.
+
+EXTRACT_PACKAGE = NO
+
+# If the EXTRACT_STATIC tag is set to YES all static members of a file will be
+# included in the documentation.
+# The default value is: NO.
+
+EXTRACT_STATIC = NO
+
+# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) defined
+# locally in source files will be included in the documentation. If set to NO
+# only classes defined in header files are included. Does not have any effect
+# for Java sources.
+# The default value is: YES.
+
+EXTRACT_LOCAL_CLASSES = YES
+
+# This flag is only useful for Objective-C code. When set to YES local methods,
+# which are defined in the implementation section but not in the interface are
+# included in the documentation. If set to NO only methods in the interface are
+# included.
+# The default value is: NO.
+
+EXTRACT_LOCAL_METHODS = NO
+
+# If this flag is set to YES, the members of anonymous namespaces will be
+# extracted and appear in the documentation as a namespace called
+# 'anonymous_namespace{file}', where file will be replaced with the base name of
+# the file that contains the anonymous namespace. By default anonymous namespace
+# are hidden.
+# The default value is: NO.
+
+EXTRACT_ANON_NSPACES = NO
+
+# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
+# undocumented members inside documented classes or files. If set to NO these
+# members will be included in the various overviews, but no documentation
+# section is generated. This option has no effect if EXTRACT_ALL is enabled.
+# The default value is: NO.
+
+HIDE_UNDOC_MEMBERS = NO
+
+# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
+# undocumented classes that are normally visible in the class hierarchy. If set
+# to NO these classes will be included in the various overviews. This option has
+# no effect if EXTRACT_ALL is enabled.
+# The default value is: NO.
+
+HIDE_UNDOC_CLASSES = NO
+
+# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend
+# (class|struct|union) declarations. If set to NO these declarations will be
+# included in the documentation.
+# The default value is: NO.
+
+HIDE_FRIEND_COMPOUNDS = NO
+
+# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
+# documentation blocks found inside the body of a function. If set to NO these
+# blocks will be appended to the function's detailed documentation block.
+# The default value is: NO.
+
+HIDE_IN_BODY_DOCS = NO
+
+# The INTERNAL_DOCS tag determines if documentation that is typed after a
+# \internal command is included. If the tag is set to NO then the documentation
+# will be excluded. Set it to YES to include the internal documentation.
+# The default value is: NO.
+
+INTERNAL_DOCS = NO
+
+# If the CASE_SENSE_NAMES tag is set to NO then doxygen will only generate file
+# names in lower-case letters. If set to YES upper-case letters are also
+# allowed. This is useful if you have classes or files whose names only differ
+# in case and if your file system supports case sensitive file names. Windows
+# and Mac users are advised to set this option to NO.
+# The default value is: system dependent.
+
+CASE_SENSE_NAMES = YES
+
+# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
+# their full class and namespace scopes in the documentation. If set to YES the
+# scope will be hidden.
+# The default value is: NO.
+
+HIDE_SCOPE_NAMES = NO
+
+# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
+# the files that are included by a file in the documentation of that file.
+# The default value is: YES.
+
+SHOW_INCLUDE_FILES = YES
+
+# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
+# grouped member an include statement to the documentation, telling the reader
+# which file to include in order to use the member.
+# The default value is: NO.
+
+SHOW_GROUPED_MEMB_INC = NO
+
+# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
+# files with double quotes in the documentation rather than with sharp brackets.
+# The default value is: NO.
+
+FORCE_LOCAL_INCLUDES = NO
+
+# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
+# documentation for inline members.
+# The default value is: YES.
+
+INLINE_INFO = YES
+
+# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
+# (detailed) documentation of file and class members alphabetically by member
+# name. If set to NO the members will appear in declaration order.
+# The default value is: YES.
+
+SORT_MEMBER_DOCS = YES
+
+# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
+# descriptions of file, namespace and class members alphabetically by member
+# name. If set to NO the members will appear in declaration order. Note that
+# this will also influence the order of the classes in the class list.
+# The default value is: NO.
+
+SORT_BRIEF_DOCS = NO
+
+# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
+# (brief and detailed) documentation of class members so that constructors and
+# destructors are listed first. If set to NO the constructors will appear in the
+# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
+# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief
+# member documentation.
+# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting
+# detailed member documentation.
+# The default value is: NO.
+
+SORT_MEMBERS_CTORS_1ST = NO
+
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
+# of group names into alphabetical order. If set to NO the group names will
+# appear in their defined order.
+# The default value is: NO.
+
+SORT_GROUP_NAMES = NO
+
+# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by
+# fully-qualified names, including namespaces. If set to NO, the class list will
+# be sorted only by class name, not including the namespace part.
+# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
+# Note: This option applies only to the class list, not to the alphabetical
+# list.
+# The default value is: NO.
+
+SORT_BY_SCOPE_NAME = NO
+
+# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
+# type resolution of all parameters of a function it will reject a match between
+# the prototype and the implementation of a member function even if there is
+# only one candidate or it is obvious which candidate to choose by doing a
+# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
+# accept a match between prototype and implementation in such cases.
+# The default value is: NO.
+
+STRICT_PROTO_MATCHING = NO
+
+# The GENERATE_TODOLIST tag can be used to enable ( YES) or disable ( NO) the
+# todo list. This list is created by putting \todo commands in the
+# documentation.
+# The default value is: YES.
+
+GENERATE_TODOLIST = YES
+
+# The GENERATE_TESTLIST tag can be used to enable ( YES) or disable ( NO) the
+# test list. This list is created by putting \test commands in the
+# documentation.
+# The default value is: YES.
+
+GENERATE_TESTLIST = YES
+
+# The GENERATE_BUGLIST tag can be used to enable ( YES) or disable ( NO) the bug
+# list. This list is created by putting \bug commands in the documentation.
+# The default value is: YES.
+
+GENERATE_BUGLIST = YES
+
+# The GENERATE_DEPRECATEDLIST tag can be used to enable ( YES) or disable ( NO)
+# the deprecated list. This list is created by putting \deprecated commands in
+# the documentation.
+# The default value is: YES.
+
+GENERATE_DEPRECATEDLIST= YES
+
+# The ENABLED_SECTIONS tag can be used to enable conditional documentation
+# sections, marked by \if <section_label> ... \endif and \cond <section_label>
+# ... \endcond blocks.
+
+ENABLED_SECTIONS =
+
+# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the
+# initial value of a variable or macro / define can have for it to appear in the
+# documentation. If the initializer consists of more lines than specified here
+# it will be hidden. Use a value of 0 to hide initializers completely. The
+# appearance of the value of individual variables and macros / defines can be
+# controlled using \showinitializer or \hideinitializer command in the
+# documentation regardless of this setting.
+# Minimum value: 0, maximum value: 10000, default value: 30.
+
+MAX_INITIALIZER_LINES = 30
+
+# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at
+# the bottom of the documentation of classes and structs. If set to YES the list
+# will mention the files that were used to generate the documentation.
+# The default value is: YES.
+
+SHOW_USED_FILES = YES
+
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This
+# will remove the Files entry from the Quick Index and from the Folder Tree View
+# (if specified).
+# The default value is: YES.
+
+SHOW_FILES = YES
+
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces
+# page. This will remove the Namespaces entry from the Quick Index and from the
+# Folder Tree View (if specified).
+# The default value is: YES.
+
+SHOW_NAMESPACES = YES
+
+# The FILE_VERSION_FILTER tag can be used to specify a program or script that
+# doxygen should invoke to get the current version for each file (typically from
+# the version control system). Doxygen will invoke the program by executing (via
+# popen()) the command command input-file, where command is the value of the
+# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
+# by doxygen. Whatever the program writes to standard output is used as the file
+# version. For an example see the documentation.
+
+FILE_VERSION_FILTER =
+
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
+# by doxygen. The layout file controls the global structure of the generated
+# output files in an output format independent way. To create the layout file
+# that represents doxygen's defaults, run doxygen with the -l option. You can
+# optionally specify a file name after the option, if omitted DoxygenLayout.xml
+# will be used as the name of the layout file.
+#
+# Note that if you run doxygen from a directory containing a file called
+# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
+# tag is left empty.
+
+LAYOUT_FILE =
+
+# The CITE_BIB_FILES tag can be used to specify one or more bib files containing
+# the reference definitions. This must be a list of .bib files. The .bib
+# extension is automatically appended if omitted. This requires the bibtex tool
+# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
+# For LaTeX the style of the bibliography can be controlled using
+# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
+# search path. See also \cite for info how to create references.
+
+CITE_BIB_FILES =
+
+#---------------------------------------------------------------------------
+# Configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+
+# The QUIET tag can be used to turn on/off the messages that are generated to
+# standard output by doxygen. If QUIET is set to YES this implies that the
+# messages are off.
+# The default value is: NO.
+
+QUIET = NO
+
+# The WARNINGS tag can be used to turn on/off the warning messages that are
+# generated to standard error ( stderr) by doxygen. If WARNINGS is set to YES
+# this implies that the warnings are on.
+#
+# Tip: Turn warnings on while writing the documentation.
+# The default value is: YES.
+
+WARNINGS = YES
+
+# If the WARN_IF_UNDOCUMENTED tag is set to YES, then doxygen will generate
+# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
+# will automatically be disabled.
+# The default value is: YES.
+
+WARN_IF_UNDOCUMENTED = YES
+
+# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
+# potential errors in the documentation, such as not documenting some parameters
+# in a documented function, or documenting parameters that don't exist or using
+# markup commands wrongly.
+# The default value is: YES.
+
+WARN_IF_DOC_ERROR = YES
+
+# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
+# are documented, but have no documentation for their parameters or return
+# value. If set to NO doxygen will only warn about wrong or incomplete parameter
+# documentation, but not about the absence of documentation.
+# The default value is: NO.
+
+WARN_NO_PARAMDOC = NO
+
+# The WARN_FORMAT tag determines the format of the warning messages that doxygen
+# can produce. The string should contain the $file, $line, and $text tags, which
+# will be replaced by the file and line number from which the warning originated
+# and the warning text. Optionally the format may contain $version, which will
+# be replaced by the version of the file (if it could be obtained via
+# FILE_VERSION_FILTER)
+# The default value is: $file:$line: $text.
+
+WARN_FORMAT = "$file:$line: $text"
+
+# The WARN_LOGFILE tag can be used to specify a file to which warning and error
+# messages should be written. If left blank the output is written to standard
+# error (stderr).
+
+WARN_LOGFILE =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the input files
+#---------------------------------------------------------------------------
+
+# The INPUT tag is used to specify the files and/or directories that contain
+# documented source files. You may enter file names like myfile.cpp or
+# directories like /usr/src/myproject. Separate the files or directories with
+# spaces.
+# Note: If this tag is empty the current directory is searched.
+
+INPUT =
+
+# This tag can be used to specify the character encoding of the source files
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
+# libiconv (or the iconv built into libc) for the transcoding. See the libiconv
+# documentation (see: http://www.gnu.org/software/libiconv) for the list of
+# possible encodings.
+# The default value is: UTF-8.
+
+INPUT_ENCODING = UTF-8
+
+# If the value of the INPUT tag contains directories, you can use the
+# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and
+# *.h) to filter out the source-files in the directories. If left blank the
+# following patterns are tested:*.c, *.cc, *.cxx, *.cpp, *.c++, *.java, *.ii,
+# *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h, *.hh, *.hxx, *.hpp,
+# *.h++, *.cs, *.d, *.php, *.php4, *.php5, *.phtml, *.inc, *.m, *.markdown,
+# *.md, *.mm, *.dox, *.py, *.f90, *.f, *.for, *.tcl, *.vhd, *.vhdl, *.ucf,
+# *.qsf, *.as and *.js.
+
+FILE_PATTERNS =
+
+# The RECURSIVE tag can be used to specify whether or not subdirectories should
+# be searched for input files as well.
+# The default value is: NO.
+
+RECURSIVE = YES
+
+# The EXCLUDE tag can be used to specify files and/or directories that should be
+# excluded from the INPUT source files. This way you can easily exclude a
+# subdirectory from a directory tree whose root is specified with the INPUT tag.
+#
+# Note that relative paths are relative to the directory from which doxygen is
+# run.
+
+EXCLUDE = doc \
+ src/old \
+ tests \
+ timings
+
+# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
+# directories that are symbolic links (a Unix file system feature) are excluded
+# from the input.
+# The default value is: NO.
+
+EXCLUDE_SYMLINKS = NO
+
+# If the value of the INPUT tag contains directories, you can use the
+# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
+# certain files from those directories.
+#
+# Note that the wildcards are matched against the file with absolute path, so to
+# exclude all test directories for example use the pattern */test/*
+
+EXCLUDE_PATTERNS =
+
+# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
+# (namespaces, classes, functions, etc.) that should be excluded from the
+# output. The symbol name can be a fully qualified name, a word, or if the
+# wildcard * is used, a substring. Examples: ANamespace, AClass,
+# AClass::ANamespace, ANamespace::*Test
+#
+# Note that the wildcards are matched against the file with absolute path, so to
+# exclude all test directories use the pattern */test/*
+
+EXCLUDE_SYMBOLS =
+
+# The EXAMPLE_PATH tag can be used to specify one or more files or directories
+# that contain example code fragments that are included (see the \include
+# command).
+
+EXAMPLE_PATH =
+
+# If the value of the EXAMPLE_PATH tag contains directories, you can use the
+# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and
+# *.h) to filter out the source-files in the directories. If left blank all
+# files are included.
+
+EXAMPLE_PATTERNS =
+
+# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
+# searched for input files to be used with the \include or \dontinclude commands
+# irrespective of the value of the RECURSIVE tag.
+# The default value is: NO.
+
+EXAMPLE_RECURSIVE = NO
+
+# The IMAGE_PATH tag can be used to specify one or more files or directories
+# that contain images that are to be included in the documentation (see the
+# \image command).
+
+IMAGE_PATH =
+
+# The INPUT_FILTER tag can be used to specify a program that doxygen should
+# invoke to filter for each input file. Doxygen will invoke the filter program
+# by executing (via popen()) the command:
+#
+# <filter> <input-file>
+#
+# where <filter> is the value of the INPUT_FILTER tag, and <input-file> is the
+# name of an input file. Doxygen will then use the output that the filter
+# program writes to standard output. If FILTER_PATTERNS is specified, this tag
+# will be ignored.
+#
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
+
+INPUT_FILTER =
+
+# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
+# basis. Doxygen will compare the file name with each pattern and apply the
+# filter if there is a match. The filters are a list of the form: pattern=filter
+# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how
+# filters are used. If the FILTER_PATTERNS tag is empty or if none of the
+# patterns match the file name, INPUT_FILTER is applied.
+
+FILTER_PATTERNS =
+
+# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
+# INPUT_FILTER ) will also be used to filter the input files that are used for
+# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES).
+# The default value is: NO.
+
+FILTER_SOURCE_FILES = NO
+
+# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
+# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and
+# it is also possible to disable source filtering for a specific pattern using
+# *.ext= (so without naming a filter).
+# This tag requires that the tag FILTER_SOURCE_FILES is set to YES.
+
+FILTER_SOURCE_PATTERNS =
+
+# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want to reuse the introduction page also for the doxygen output.
+
+USE_MDFILE_AS_MAINPAGE =
+
+#---------------------------------------------------------------------------
+# Configuration options related to source browsing
+#---------------------------------------------------------------------------
+
+# If the SOURCE_BROWSER tag is set to YES then a list of source files will be
+# generated. Documented entities will be cross-referenced with these sources.
+#
+# Note: To get rid of all source code in the generated output, make sure that
+# also VERBATIM_HEADERS is set to NO.
+# The default value is: NO.
+
+SOURCE_BROWSER = YES
+
+# Setting the INLINE_SOURCES tag to YES will include the body of functions,
+# classes and enums directly into the documentation.
+# The default value is: NO.
+
+INLINE_SOURCES = NO
+
+# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any
+# special comment blocks from generated source code fragments. Normal C, C++ and
+# Fortran comments will always remain visible.
+# The default value is: YES.
+
+STRIP_CODE_COMMENTS = YES
+
+# If the REFERENCED_BY_RELATION tag is set to YES then for each documented
+# function all documented functions referencing it will be listed.
+# The default value is: NO.
+
+REFERENCED_BY_RELATION = YES
+
+# If the REFERENCES_RELATION tag is set to YES then for each documented function
+# all documented entities called/used by that function will be listed.
+# The default value is: NO.
+
+REFERENCES_RELATION = YES
+
+# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
+# to YES, then the hyperlinks from functions in REFERENCES_RELATION and
+# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will
+# link to the documentation.
+# The default value is: YES.
+
+REFERENCES_LINK_SOURCE = YES
+
+# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the
+# source code will show a tooltip with additional information such as prototype,
+# brief description and links to the definition and documentation. Since this
+# will make the HTML file larger and loading of large files a bit slower, you
+# can opt to disable this feature.
+# The default value is: YES.
+# This tag requires that the tag SOURCE_BROWSER is set to YES.
+
+SOURCE_TOOLTIPS = YES
+
+# If the USE_HTAGS tag is set to YES then the references to source code will
+# point to the HTML generated by the htags(1) tool instead of doxygen built-in
+# source browser. The htags tool is part of GNU's global source tagging system
+# (see http://www.gnu.org/software/global/global.html). You will need version
+# 4.8.6 or higher.
+#
+# To use it do the following:
+# - Install the latest version of global
+# - Enable SOURCE_BROWSER and USE_HTAGS in the config file
+# - Make sure the INPUT points to the root of the source tree
+# - Run doxygen as normal
+#
+# Doxygen will invoke htags (and that will in turn invoke gtags), so these
+# tools must be available from the command line (i.e. in the search path).
+#
+# The result: instead of the source browser generated by doxygen, the links to
+# source code will now point to the output of htags.
+# The default value is: NO.
+# This tag requires that the tag SOURCE_BROWSER is set to YES.
+
+USE_HTAGS = NO
+
+# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a
+# verbatim copy of the header file for each class for which an include is
+# specified. Set to NO to disable this.
+# See also: Section \class.
+# The default value is: YES.
+
+VERBATIM_HEADERS = YES
+
+# If the CLANG_ASSISTED_PARSING tag is set to YES, then doxygen will use the
+# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
+# cost of reduced performance. This can be particularly helpful with template
+# rich C++ code for which doxygen's built-in parser lacks the necessary type
+# information.
+# Note: The availability of this option depends on whether or not doxygen was
+# compiled with the --with-libclang option.
+# The default value is: NO.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified with INPUT and INCLUDE_PATH.
+# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
+
+CLANG_OPTIONS =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+
+# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all
+# compounds will be generated. Enable this if the project contains a lot of
+# classes, structs, unions or interfaces.
+# The default value is: YES.
+
+ALPHABETICAL_INDEX = NO
+
+# The COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns in
+# which the alphabetical index list will be split.
+# Minimum value: 1, maximum value: 20, default value: 5.
+# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
+
+COLS_IN_ALPHA_INDEX = 5
+
+# In case all classes in a project start with a common prefix, all classes will
+# be put under the same header in the alphabetical index. The IGNORE_PREFIX tag
+# can be used to specify a prefix (or a list of prefixes) that should be ignored
+# while generating the index headers.
+# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
+
+IGNORE_PREFIX =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the HTML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_HTML tag is set to YES doxygen will generate HTML output
+# The default value is: YES.
+
+GENERATE_HTML = YES
+
+# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: html.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_OUTPUT = html
+
+# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
+# generated HTML page (for example: .htm, .php, .asp).
+# The default value is: .html.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_FILE_EXTENSION = .html
+
+# The HTML_HEADER tag can be used to specify a user-defined HTML header file for
+# each generated HTML page. If the tag is left blank doxygen will generate a
+# standard header.
+#
+# To get valid HTML the header file that includes any scripts and style sheets
+# that doxygen needs, which is dependent on the configuration options used (e.g.
+# the setting GENERATE_TREEVIEW). It is highly recommended to start with a
+# default header using
+# doxygen -w html new_header.html new_footer.html new_stylesheet.css
+# YourConfigFile
+# and then modify the file new_header.html. See also section "Doxygen usage"
+# for information on how to generate the default header that doxygen normally
+# uses.
+# Note: The header is subject to change so you typically have to regenerate the
+# default header when upgrading to a newer version of doxygen. For a description
+# of the possible markers and block names see the documentation.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_HEADER =
+
+# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
+# generated HTML page. If the tag is left blank doxygen will generate a standard
+# footer. See HTML_HEADER for more information on how to generate a default
+# footer and what special commands can be used inside the footer. See also
+# section "Doxygen usage" for information on how to generate the default footer
+# that doxygen normally uses.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_FOOTER = doc/devel/html/footer.html
+
+# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
+# sheet that is used by each HTML page. It can be used to fine-tune the look of
+# the HTML output. If left blank doxygen will generate a default style sheet.
+# See also section "Doxygen usage" for information on how to generate the style
+# sheet that doxygen normally uses.
+# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as
+# it is more robust and this tag (HTML_STYLESHEET) will in the future become
+# obsolete.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_STYLESHEET =
+
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
+# created by doxygen. Using this option one can overrule certain style aspects.
+# This is preferred over using HTML_STYLESHEET since it does not replace the
+# standard style sheet and is therefor more robust against future updates.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra stylesheet files is of importance (e.g. the last
+# stylesheet in the list overrules the setting of the previous ones in the
+# list). For an example see the documentation.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_EXTRA_STYLESHEET =
+
+# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the HTML output directory. Note
+# that these files will be copied to the base HTML output directory. Use the
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# files. In the HTML_STYLESHEET file, use the file name only. Also note that the
+# files will be copied as-is; there are no commands or markers available.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_EXTRA_FILES =
+
+# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
+# will adjust the colors in the stylesheet and background images according to
+# this color. Hue is specified as an angle on a colorwheel, see
+# http://en.wikipedia.org/wiki/Hue for more information. For instance the value
+# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300
+# purple, and 360 is red again.
+# Minimum value: 0, maximum value: 359, default value: 220.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE_HUE = 220
+
+# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
+# in the HTML output. For a value of 0 the output will use grayscales only. A
+# value of 255 will produce the most vivid colors.
+# Minimum value: 0, maximum value: 255, default value: 100.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE_SAT = 100
+
+# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the
+# luminance component of the colors in the HTML output. Values below 100
+# gradually make the output lighter, whereas values above 100 make the output
+# darker. The value divided by 100 is the actual gamma applied, so 80 represents
+# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not
+# change the gamma.
+# Minimum value: 40, maximum value: 240, default value: 80.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COLORSTYLE_GAMMA = 80
+
+# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
+# page will contain the date and time when the page was generated. Setting this
+# to NO can help when comparing the output of multiple runs.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_TIMESTAMP = YES
+
+# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
+# documentation will contain sections that can be hidden and shown after the
+# page has loaded.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_DYNAMIC_SECTIONS = NO
+
+# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
+# shown in the various tree structured indices initially; the user can expand
+# and collapse entries dynamically later on. Doxygen will expand the tree to
+# such a level that at most the specified number of entries are visible (unless
+# a fully collapsed tree already exceeds this amount). So setting the number of
+# entries 1 will produce a full collapsed tree by default. 0 is a special value
+# representing an infinite number of entries and will result in a full expanded
+# tree by default.
+# Minimum value: 0, maximum value: 9999, default value: 100.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_INDEX_NUM_ENTRIES = 100
+
+# If the GENERATE_DOCSET tag is set to YES, additional index files will be
+# generated that can be used as input for Apple's Xcode 3 integrated development
+# environment (see: http://developer.apple.com/tools/xcode/), introduced with
+# OSX 10.5 (Leopard). To create a documentation set, doxygen will generate a
+# Makefile in the HTML output directory. Running make will produce the docset in
+# that directory and running make install will install the docset in
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
+# startup. See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html
+# for more information.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_DOCSET = NO
+
+# This tag determines the name of the docset feed. A documentation feed provides
+# an umbrella under which multiple documentation sets from a single provider
+# (such as a company or product suite) can be grouped.
+# The default value is: Doxygen generated docs.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_FEEDNAME = "Doxygen generated docs"
+
+# This tag specifies a string that should uniquely identify the documentation
+# set bundle. This should be a reverse domain-name style string, e.g.
+# com.mycompany.MyDocSet. Doxygen will append .docset to the name.
+# The default value is: org.doxygen.Project.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_BUNDLE_ID = org.doxygen.Project
+
+# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify
+# the documentation publisher. This should be a reverse domain-name style
+# string, e.g. com.mycompany.MyDocSet.documentation.
+# The default value is: org.doxygen.Publisher.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_PUBLISHER_ID = org.doxygen.Publisher
+
+# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher.
+# The default value is: Publisher.
+# This tag requires that the tag GENERATE_DOCSET is set to YES.
+
+DOCSET_PUBLISHER_NAME = Publisher
+
+# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
+# additional HTML index files: index.hhp, index.hhc, and index.hhk. The
+# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
+# (see: http://www.microsoft.com/en-us/download/details.aspx?id=21138) on
+# Windows.
+#
+# The HTML Help Workshop contains a compiler that can convert all HTML output
+# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
+# files are now used as the Windows 98 help format, and will replace the old
+# Windows help format (.hlp) on all Windows platforms in the future. Compressed
+# HTML files also contain an index, a table of contents, and you can search for
+# words in the documentation. The HTML workshop also contains a viewer for
+# compressed HTML files.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_HTMLHELP = NO
+
+# The CHM_FILE tag can be used to specify the file name of the resulting .chm
+# file. You can add a path in front of the file if the result should not be
+# written to the html output directory.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+CHM_FILE =
+
+# The HHC_LOCATION tag can be used to specify the location (absolute path
+# including file name) of the HTML help compiler ( hhc.exe). If non-empty
+# doxygen will try to run the HTML help compiler on the generated index.hhp.
+# The file has to be specified with full path.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+HHC_LOCATION =
+
+# The GENERATE_CHI flag controls if a separate .chi index file is generated (
+# YES) or that it should be included in the master .chm file ( NO).
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+GENERATE_CHI = NO
+
+# The CHM_INDEX_ENCODING is used to encode HtmlHelp index ( hhk), content ( hhc)
+# and project file content.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+CHM_INDEX_ENCODING =
+
+# The BINARY_TOC flag controls whether a binary table of contents is generated (
+# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+BINARY_TOC = NO
+
+# The TOC_EXPAND flag can be set to YES to add extra items for group members to
+# the table of contents of the HTML help documentation and to the tree view.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
+
+TOC_EXPAND = NO
+
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
+# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
+# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
+# (.qch) of the generated HTML documentation.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_QHP = NO
+
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify
+# the file name of the resulting .qch file. The path specified is relative to
+# the HTML output folder.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QCH_FILE =
+
+# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help
+# Project output. For more information please see Qt Help Project / Namespace
+# (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#namespace).
+# The default value is: org.doxygen.Project.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_NAMESPACE =
+
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
+# Help Project output. For more information please see Qt Help Project / Virtual
+# Folders (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#virtual-
+# folders).
+# The default value is: doc.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_VIRTUAL_FOLDER = doc
+
+# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom
+# filter to add. For more information please see Qt Help Project / Custom
+# Filters (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#custom-
+# filters).
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_CUST_FILTER_NAME =
+
+# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the
+# custom filter to add. For more information please see Qt Help Project / Custom
+# Filters (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#custom-
+# filters).
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_CUST_FILTER_ATTRS =
+
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
+# project's filter section matches. Qt Help Project / Filter Attributes (see:
+# http://qt-project.org/doc/qt-4.8/qthelpproject.html#filter-attributes).
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHP_SECT_FILTER_ATTRS =
+
+# The QHG_LOCATION tag can be used to specify the location of Qt's
+# qhelpgenerator. If non-empty doxygen will try to run qhelpgenerator on the
+# generated .qhp file.
+# This tag requires that the tag GENERATE_QHP is set to YES.
+
+QHG_LOCATION =
+
+# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
+# generated, together with the HTML files, they form an Eclipse help plugin. To
+# install this plugin and make it available under the help contents menu in
+# Eclipse, the contents of the directory containing the HTML and XML files needs
+# to be copied into the plugins directory of eclipse. The name of the directory
+# within the plugins directory should be the same as the ECLIPSE_DOC_ID value.
+# After copying Eclipse needs to be restarted before the help appears.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_ECLIPSEHELP = NO
+
+# A unique identifier for the Eclipse help plugin. When installing the plugin
+# the directory name containing the HTML and XML files should also have this
+# name. Each documentation set should have its own identifier.
+# The default value is: org.doxygen.Project.
+# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES.
+
+ECLIPSE_DOC_ID = org.doxygen.Project
+
+# If you want full control over the layout of the generated HTML pages it might
+# be necessary to disable the index and replace it with your own. The
+# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top
+# of each HTML page. A value of NO enables the index and the value YES disables
+# it. Since the tabs in the index contain the same information as the navigation
+# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+DISABLE_INDEX = NO
+
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
+# structure should be generated to display hierarchical information. If the tag
+# value is set to YES, a side panel will be generated containing a tree-like
+# index structure (just like the one that is generated for HTML Help). For this
+# to work a browser that supports JavaScript, DHTML, CSS and frames is required
+# (i.e. any modern browser). Windows users are probably better off using the
+# HTML help feature. Via custom stylesheets (see HTML_EXTRA_STYLESHEET) one can
+# further fine-tune the look of the index. As an example, the default style
+# sheet generated by doxygen has an example that shows how to put an image at
+# the root of the tree instead of the PROJECT_NAME. Since the tree basically has
+# the same information as the tab index, you could consider setting
+# DISABLE_INDEX to YES when enabling this option.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+GENERATE_TREEVIEW = NO
+
+# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
+# doxygen will group on one line in the generated HTML documentation.
+#
+# Note that a value of 0 will completely suppress the enum values from appearing
+# in the overview section.
+# Minimum value: 0, maximum value: 20, default value: 4.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+ENUM_VALUES_PER_LINE = 4
+
+# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used
+# to set the initial width (in pixels) of the frame in which the tree is shown.
+# Minimum value: 0, maximum value: 1500, default value: 250.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+TREEVIEW_WIDTH = 250
+
+# When the EXT_LINKS_IN_WINDOW option is set to YES doxygen will open links to
+# external symbols imported via tag files in a separate window.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+EXT_LINKS_IN_WINDOW = NO
+
+# Use this tag to change the font size of LaTeX formulas included as images in
+# the HTML documentation. When you change the font size after a successful
+# doxygen run you need to manually remove any form_*.png images from the HTML
+# output directory to force them to be regenerated.
+# Minimum value: 8, maximum value: 50, default value: 10.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+FORMULA_FONTSIZE = 10
+
+# Use the FORMULA_TRANPARENT tag to determine whether or not the images
+# generated for formulas are transparent PNGs. Transparent PNGs are not
+# supported properly for IE 6.0, but are supported on all modern browsers.
+#
+# Note that when changing this option you need to delete any form_*.png files in
+# the HTML output directory before the changes have effect.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+FORMULA_TRANSPARENT = YES
+
+# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see
+# http://www.mathjax.org) which uses client side Javascript for the rendering
+# instead of using prerendered bitmaps. Use this if you do not have LaTeX
+# installed or if you want to formulas look prettier in the HTML output. When
+# enabled you may also need to install MathJax separately and configure the path
+# to it using the MATHJAX_RELPATH option.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+USE_MATHJAX = NO
+
+# When MathJax is enabled you can set the default output format to be used for
+# the MathJax output. See the MathJax site (see:
+# http://docs.mathjax.org/en/latest/output.html) for more details.
+# Possible values are: HTML-CSS (which is slower, but has the best
+# compatibility), NativeMML (i.e. MathML) and SVG.
+# The default value is: HTML-CSS.
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_FORMAT = HTML-CSS
+
+# When MathJax is enabled you need to specify the location relative to the HTML
+# output directory using the MATHJAX_RELPATH option. The destination directory
+# should contain the MathJax.js script. For instance, if the mathjax directory
+# is located at the same level as the HTML output directory, then
+# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax
+# Content Delivery Network so you can quickly see the result without installing
+# MathJax. However, it is strongly recommended to install a local copy of
+# MathJax from http://www.mathjax.org before deployment.
+# The default value is: http://cdn.mathjax.org/mathjax/latest.
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_RELPATH = http://cdn.mathjax.org/mathjax/latest
+
+# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax
+# extension names that should be enabled during MathJax rendering. For example
+# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_EXTENSIONS =
+
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces
+# of code that will be used on startup of the MathJax code. See the MathJax site
+# (see: http://docs.mathjax.org/en/latest/output.html) for more details. For an
+# example see the documentation.
+# This tag requires that the tag USE_MATHJAX is set to YES.
+
+MATHJAX_CODEFILE =
+
+# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
+# the HTML output. The underlying search engine uses javascript and DHTML and
+# should work on any modern browser. Note that when using HTML help
+# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
+# there is already a search function so this one should typically be disabled.
+# For large projects the javascript based search engine can be slow, then
+# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to
+# search using the keyboard; to jump to the search box use <access key> + S
+# (what the <access key> is depends on the OS and browser, but it is typically
+# <CTRL>, <ALT>/<option>, or both). Inside the search box use the <cursor down
+# key> to jump into the search results window, the results can be navigated
+# using the <cursor keys>. Press <Enter> to select an item or <escape> to cancel
+# the search. The filter options can be selected when the cursor is inside the
+# search box by pressing <Shift>+<cursor down>. Also here use the <cursor keys>
+# to select a filter and <Enter> or <escape> to activate or cancel the filter
+# option.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+SEARCHENGINE = NO
+
+# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
+# implemented using a web server instead of a web client using Javascript. There
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
+# The default value is: NO.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+SERVER_BASED_SEARCH = NO
+
+# When EXTERNAL_SEARCH tag is enabled doxygen will no longer generate the PHP
+# script for searching. Instead the search results are written to an XML file
+# which needs to be processed by an external indexer. Doxygen will invoke an
+# external search engine pointed to by the SEARCHENGINE_URL option to obtain the
+# search results.
+#
+# Doxygen ships with an example indexer ( doxyindexer) and search engine
+# (doxysearch.cgi) which are based on the open source search engine library
+# Xapian (see: http://xapian.org/).
+#
+# See the section "External Indexing and Searching" for details.
+# The default value is: NO.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+EXTERNAL_SEARCH = NO
+
+# The SEARCHENGINE_URL should point to a search engine hosted by a web server
+# which will return the search results when EXTERNAL_SEARCH is enabled.
+#
+# Doxygen ships with an example indexer ( doxyindexer) and search engine
+# (doxysearch.cgi) which are based on the open source search engine library
+# Xapian (see: http://xapian.org/). See the section "External Indexing and
+# Searching" for details.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+SEARCHENGINE_URL =
+
+# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the unindexed
+# search data is written to a file for indexing by an external tool. With the
+# SEARCHDATA_FILE tag the name of this file can be specified.
+# The default file is: searchdata.xml.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+SEARCHDATA_FILE = searchdata.xml
+
+# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the
+# EXTERNAL_SEARCH_ID tag can be used as an identifier for the project. This is
+# useful in combination with EXTRA_SEARCH_MAPPINGS to search through multiple
+# projects and redirect the results back to the right project.
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+EXTERNAL_SEARCH_ID =
+
+# The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through doxygen
+# projects other than the one defined by this configuration file, but that are
+# all added to the same external search index. Each project needs to have a
+# unique id set via EXTERNAL_SEARCH_ID. The search mapping then maps the id of
+# to a relative location where the documentation can be found. The format is:
+# EXTRA_SEARCH_MAPPINGS = tagname1=loc1 tagname2=loc2 ...
+# This tag requires that the tag SEARCHENGINE is set to YES.
+
+EXTRA_SEARCH_MAPPINGS =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_LATEX tag is set to YES doxygen will generate LaTeX output.
+# The default value is: YES.
+
+GENERATE_LATEX = YES
+
+# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: latex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_OUTPUT = latex
+
+# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
+# invoked.
+#
+# Note that when enabling USE_PDFLATEX this option is only used for generating
+# bitmaps for formulas in the HTML output, but not in the Makefile that is
+# written to the output directory.
+# The default file is: latex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_CMD_NAME = latex
+
+# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to generate
+# index for LaTeX.
+# The default file is: makeindex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+MAKEINDEX_CMD_NAME = makeindex
+
+# If the COMPACT_LATEX tag is set to YES doxygen generates more compact LaTeX
+# documents. This may be useful for small projects and may help to save some
+# trees in general.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+COMPACT_LATEX = NO
+
+# The PAPER_TYPE tag can be used to set the paper type that is used by the
+# printer.
+# Possible values are: a4 (210 x 297 mm), letter (8.5 x 11 inches), legal (8.5 x
+# 14 inches) and executive (7.25 x 10.5 inches).
+# The default value is: a4.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+PAPER_TYPE = a4wide
+
+# The EXTRA_PACKAGES tag can be used to specify one or more LaTeX package names
+# that should be included in the LaTeX output. To get the times font for
+# instance you can specify
+# EXTRA_PACKAGES=times
+# If left blank no extra packages will be included.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+EXTRA_PACKAGES =
+
+# The LATEX_HEADER tag can be used to specify a personal LaTeX header for the
+# generated LaTeX document. The header should contain everything until the first
+# chapter. If it is left blank doxygen will generate a standard header. See
+# section "Doxygen usage" for information on how to let doxygen write the
+# default header to a separate file.
+#
+# Note: Only use a user-defined header if you know what you are doing! The
+# following commands have a special meaning inside the header: $title,
+# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
+# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
+# for the replacement values of the other commands the user is refered to
+# HTML_HEADER.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_HEADER =
+
+# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
+# generated LaTeX document. The footer should contain everything after the last
+# chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer.
+#
+# Note: Only use a user-defined footer if you know what you are doing!
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_FOOTER =
+
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the LATEX_OUTPUT output
+# directory. Note that the files will be copied as-is; there are no commands or
+# markers available.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_EXTRA_FILES =
+
+# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated is
+# prepared for conversion to PDF (using ps2pdf or pdflatex). The PDF file will
+# contain links (just like the HTML output) instead of page references. This
+# makes the output suitable for online browsing using a PDF viewer.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+PDF_HYPERLINKS = YES
+
+# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
+# the PDF file directly from the LaTeX files. Set this option to YES to get a
+# higher quality PDF documentation.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+USE_PDFLATEX = NO
+
+# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \batchmode
+# command to the generated LaTeX files. This will instruct LaTeX to keep running
+# if errors occur, instead of asking the user for help. This option is also used
+# when generating formulas in HTML.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_BATCHMODE = NO
+
+# If the LATEX_HIDE_INDICES tag is set to YES then doxygen will not include the
+# index chapters (such as File Index, Compound Index, etc.) in the output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_HIDE_INDICES = NO
+
+# If the LATEX_SOURCE_CODE tag is set to YES then doxygen will include source
+# code with syntax highlighting in the LaTeX output.
+#
+# Note that which sources are shown also depends on other settings such as
+# SOURCE_BROWSER.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_SOURCE_CODE = NO
+
+# The LATEX_BIB_STYLE tag can be used to specify the style to use for the
+# bibliography, e.g. plainnat, or ieeetr. See
+# http://en.wikipedia.org/wiki/BibTeX and \cite for more info.
+# The default value is: plain.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_BIB_STYLE = plain
+
+#---------------------------------------------------------------------------
+# Configuration options related to the RTF output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_RTF tag is set to YES doxygen will generate RTF output. The
+# RTF output is optimized for Word 97 and may not look too pretty with other RTF
+# readers/editors.
+# The default value is: NO.
+
+GENERATE_RTF = NO
+
+# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: rtf.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_OUTPUT = rtf
+
+# If the COMPACT_RTF tag is set to YES doxygen generates more compact RTF
+# documents. This may be useful for small projects and may help to save some
+# trees in general.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+COMPACT_RTF = NO
+
+# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated will
+# contain hyperlink fields. The RTF file will contain links (just like the HTML
+# output) instead of page references. This makes the output suitable for online
+# browsing using Word or some other Word compatible readers that support those
+# fields.
+#
+# Note: WordPad (write) and others do not support links.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_HYPERLINKS = NO
+
+# Load stylesheet definitions from file. Syntax is similar to doxygen's config
+# file, i.e. a series of assignments. You only have to provide replacements,
+# missing definitions are set to their default value.
+#
+# See also section "Doxygen usage" for information on how to generate the
+# default style sheet that doxygen normally uses.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_STYLESHEET_FILE =
+
+# Set optional variables used in the generation of an RTF document. Syntax is
+# similar to doxygen's config file. A template extensions file can be generated
+# using doxygen -e rtf extensionFile.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_EXTENSIONS_FILE =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the man page output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_MAN tag is set to YES doxygen will generate man pages for
+# classes and files.
+# The default value is: NO.
+
+GENERATE_MAN = NO
+
+# The MAN_OUTPUT tag is used to specify where the man pages will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it. A directory man3 will be created inside the directory specified by
+# MAN_OUTPUT.
+# The default directory is: man.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_OUTPUT = man
+
+# The MAN_EXTENSION tag determines the extension that is added to the generated
+# man pages. In case the manual section does not start with a number, the number
+# 3 is prepended. The dot (.) at the beginning of the MAN_EXTENSION tag is
+# optional.
+# The default value is: .3.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_EXTENSION = .3
+
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR =
+
+# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
+# will generate one additional man file for each entity documented in the real
+# man page(s). These additional files only source the real man page, but without
+# them the man command would be unable to find the correct page.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_LINKS = NO
+
+#---------------------------------------------------------------------------
+# Configuration options related to the XML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_XML tag is set to YES doxygen will generate an XML file that
+# captures the structure of the code including all documentation.
+# The default value is: NO.
+
+GENERATE_XML = NO
+
+# The XML_OUTPUT tag is used to specify where the XML pages will be put. If a
+# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
+# it.
+# The default directory is: xml.
+# This tag requires that the tag GENERATE_XML is set to YES.
+
+XML_OUTPUT = xml
+
+# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
+# listings (including syntax highlighting and cross-referencing information) to
+# the XML output. Note that enabling this will significantly increase the size
+# of the XML output.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_XML is set to YES.
+
+XML_PROGRAMLISTING = YES
+
+#---------------------------------------------------------------------------
+# Configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES doxygen will generate Docbook files
+# that can be used to generate PDF.
+# The default value is: NO.
+
+GENERATE_DOCBOOK = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the Docbook pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it.
+# The default directory is: docbook.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_OUTPUT = docbook
+
+# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
+# program listings (including syntax highlighting and cross-referencing
+# information) to the DOCBOOK output. Note that enabling this will significantly
+# increase the size of the DOCBOOK output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_PROGRAMLISTING = NO
+
+#---------------------------------------------------------------------------
+# Configuration options for the AutoGen Definitions output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_AUTOGEN_DEF tag is set to YES doxygen will generate an AutoGen
+# Definitions (see http://autogen.sf.net) file that captures the structure of
+# the code including all documentation. Note that this feature is still
+# experimental and incomplete at the moment.
+# The default value is: NO.
+
+GENERATE_AUTOGEN_DEF = NO
+
+#---------------------------------------------------------------------------
+# Configuration options related to the Perl module output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_PERLMOD tag is set to YES doxygen will generate a Perl module
+# file that captures the structure of the code including all documentation.
+#
+# Note that this feature is still experimental and incomplete at the moment.
+# The default value is: NO.
+
+GENERATE_PERLMOD = NO
+
+# If the PERLMOD_LATEX tag is set to YES doxygen will generate the necessary
+# Makefile rules, Perl scripts and LaTeX code to be able to generate PDF and DVI
+# output from the Perl module output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_PERLMOD is set to YES.
+
+PERLMOD_LATEX = NO
+
+# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be nicely
+# formatted so it can be parsed by a human reader. This is useful if you want to
+# understand what is going on. On the other hand, if this tag is set to NO the
+# size of the Perl module output will be much smaller and Perl will parse it
+# just the same.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_PERLMOD is set to YES.
+
+PERLMOD_PRETTY = YES
+
+# The names of the make variables in the generated doxyrules.make file are
+# prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. This is useful
+# so different doxyrules.make files included by the same Makefile don't
+# overwrite each other's variables.
+# This tag requires that the tag GENERATE_PERLMOD is set to YES.
+
+PERLMOD_MAKEVAR_PREFIX =
+
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor
+#---------------------------------------------------------------------------
+
+# If the ENABLE_PREPROCESSING tag is set to YES doxygen will evaluate all
+# C-preprocessor directives found in the sources and include files.
+# The default value is: YES.
+
+ENABLE_PREPROCESSING = YES
+
+# If the MACRO_EXPANSION tag is set to YES doxygen will expand all macro names
+# in the source code. If set to NO only conditional compilation will be
+# performed. Macro expansion can be done in a controlled way by setting
+# EXPAND_ONLY_PREDEF to YES.
+# The default value is: NO.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+MACRO_EXPANSION = NO
+
+# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES then
+# the macro expansion is limited to the macros specified with the PREDEFINED and
+# EXPAND_AS_DEFINED tags.
+# The default value is: NO.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+EXPAND_ONLY_PREDEF = NO
+
+# If the SEARCH_INCLUDES tag is set to YES the includes files in the
+# INCLUDE_PATH will be searched if a #include is found.
+# The default value is: YES.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+SEARCH_INCLUDES = YES
+
+# The INCLUDE_PATH tag can be used to specify one or more directories that
+# contain include files that are not input files but should be processed by the
+# preprocessor.
+# This tag requires that the tag SEARCH_INCLUDES is set to YES.
+
+INCLUDE_PATH =
+
+# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
+# patterns (like *.h and *.hpp) to filter out the header-files in the
+# directories. If left blank, the patterns specified with FILE_PATTERNS will be
+# used.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+INCLUDE_FILE_PATTERNS =
+
+# The PREDEFINED tag can be used to specify one or more macro names that are
+# defined before the preprocessor is started (similar to the -D option of e.g.
+# gcc). The argument of the tag is a list of macros of the form: name or
+# name=definition (no spaces). If the definition and the "=" are omitted, "=1"
+# is assumed. To prevent a macro definition from being undefined via #undef or
+# recursively expanded use the := operator instead of the = operator.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+PREDEFINED =
+
+# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
+# tag can be used to specify a list of macro names that should be expanded. The
+# macro definition that is found in the sources will be used. Use the PREDEFINED
+# tag if you want to use a different macro definition that overrules the
+# definition found in the source code.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+EXPAND_AS_DEFINED =
+
+# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
+# removed.
+# The default value is: YES.
+# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
+
+SKIP_FUNCTION_MACROS = YES
+
+#---------------------------------------------------------------------------
+# Configuration options related to external references
+#---------------------------------------------------------------------------
+
+# The TAGFILES tag can be used to specify one or more tag files. For each tag
+# file the location of the external documentation should be added. The format of
+# a tag file without this location is as follows:
+# TAGFILES = file1 file2 ...
+# Adding location for the tag files is done as follows:
+# TAGFILES = file1=loc1 "file2 = loc2" ...
+# where loc1 and loc2 can be relative or absolute paths or URLs. See the
+# section "Linking to external documentation" for more information about the use
+# of tag files.
+# Note: Each tag file must have a unique name (where the name does NOT include
+# the path). If a tag file is not located in the directory in which doxygen is
+# run, you must also specify the path to the tagfile here.
+
+TAGFILES =
+
+# When a file name is specified after GENERATE_TAGFILE, doxygen will create a
+# tag file that is based on the input files it reads. See section "Linking to
+# external documentation" for more information about the usage of tag files.
+
+GENERATE_TAGFILE =
+
+# If the ALLEXTERNALS tag is set to YES all external class will be listed in the
+# class index. If set to NO only the inherited external classes will be listed.
+# The default value is: NO.
+
+ALLEXTERNALS = NO
+
+# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed in
+# the modules index. If set to NO, only the current project's groups will be
+# listed.
+# The default value is: YES.
+
+EXTERNAL_GROUPS = YES
+
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed in
+# the related pages index. If set to NO, only the current project's pages will
+# be listed.
+# The default value is: YES.
+
+EXTERNAL_PAGES = YES
+
+# The PERL_PATH should be the absolute path and name of the perl script
+# interpreter (i.e. the result of 'which perl').
+# The default file (with absolute path) is: /usr/bin/perl.
+
+PERL_PATH = /usr/bin/perl
+
+#---------------------------------------------------------------------------
+# Configuration options related to the dot tool
+#---------------------------------------------------------------------------
+
+# If the CLASS_DIAGRAMS tag is set to YES doxygen will generate a class diagram
+# (in HTML and LaTeX) for classes with base or super classes. Setting the tag to
+# NO turns the diagrams off. Note that this option also works with HAVE_DOT
+# disabled, but it is recommended to install and use dot, since it yields more
+# powerful graphs.
+# The default value is: YES.
+
+CLASS_DIAGRAMS = YES
+
+# You can define message sequence charts within doxygen comments using the \msc
+# command. Doxygen will then run the mscgen tool (see:
+# http://www.mcternan.me.uk/mscgen/)) to produce the chart and insert it in the
+# documentation. The MSCGEN_PATH tag allows you to specify the directory where
+# the mscgen tool resides. If left empty the tool is assumed to be found in the
+# default search path.
+
+MSCGEN_PATH =
+
+# You can include diagrams made with dia in doxygen documentation. Doxygen will
+# then run dia to produce the diagram and insert it in the documentation. The
+# DIA_PATH tag allows you to specify the directory where the dia binary resides.
+# If left empty dia is assumed to be found in the default search path.
+
+DIA_PATH =
+
+# If set to YES, the inheritance and collaboration graphs will hide inheritance
+# and usage relations if the target is undocumented or is not a class.
+# The default value is: YES.
+
+HIDE_UNDOC_RELATIONS = YES
+
+# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
+# available from the path. This tool is part of Graphviz (see:
+# http://www.graphviz.org/), a graph visualization toolkit from AT&T and Lucent
+# Bell Labs. The other options in this section have no effect if this option is
+# set to NO
+# The default value is: YES.
+
+HAVE_DOT = YES
+
+# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
+# to run in parallel. When set to 0 doxygen will base this on the number of
+# processors available in the system. You can set it explicitly to a value
+# larger than 0 to get control over the balance between CPU load and processing
+# speed.
+# Minimum value: 0, maximum value: 32, default value: 0.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_NUM_THREADS = 0
+
+# When you want a differently looking font in the dot files that doxygen
+# generates you can specify the font name using DOT_FONTNAME. You need to make
+# sure dot is able to find the font, which can be done by putting it in a
+# standard location or by setting the DOTFONTPATH environment variable or by
+# setting DOT_FONTPATH to the directory containing the font.
+# The default value is: Helvetica.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_FONTNAME = FreeSans
+
+# The DOT_FONTSIZE tag can be used to set the size (in points) of the font of
+# dot graphs.
+# Minimum value: 4, maximum value: 24, default value: 10.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_FONTSIZE = 10
+
+# By default doxygen will tell dot to use the default font as specified with
+# DOT_FONTNAME. If you specify a different font using DOT_FONTNAME you can set
+# the path where dot can find it using this tag.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_FONTPATH =
+
+# If the CLASS_GRAPH tag is set to YES then doxygen will generate a graph for
+# each documented class showing the direct and indirect inheritance relations.
+# Setting this tag to YES will force the CLASS_DIAGRAMS tag to NO.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+CLASS_GRAPH = YES
+
+# If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a
+# graph for each documented class showing the direct and indirect implementation
+# dependencies (inheritance, containment, and class references variables) of the
+# class with other documented classes.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+COLLABORATION_GRAPH = YES
+
+# If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for
+# groups, showing the direct groups dependencies.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+GROUP_GRAPHS = YES
+
+# If the UML_LOOK tag is set to YES doxygen will generate inheritance and
+# collaboration diagrams in a style similar to the OMG's Unified Modeling
+# Language.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+UML_LOOK = NO
+
+# If the UML_LOOK tag is enabled, the fields and methods are shown inside the
+# class node. If there are many fields or methods and many nodes the graph may
+# become too big to be useful. The UML_LIMIT_NUM_FIELDS threshold limits the
+# number of items for each type to make the size more manageable. Set this to 0
+# for no limit. Note that the threshold may be exceeded by 50% before the limit
+# is enforced. So when you set the threshold to 10, up to 15 fields may appear,
+# but if the number exceeds 15, the total amount of fields shown is limited to
+# 10.
+# Minimum value: 0, maximum value: 100, default value: 10.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+UML_LIMIT_NUM_FIELDS = 10
+
+# If the TEMPLATE_RELATIONS tag is set to YES then the inheritance and
+# collaboration graphs will show the relations between templates and their
+# instances.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+TEMPLATE_RELATIONS = NO
+
+# If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
+# YES then doxygen will generate a graph for each documented file showing the
+# direct and indirect include dependencies of the file with other documented
+# files.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+INCLUDE_GRAPH = YES
+
+# If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
+# set to YES then doxygen will generate a graph for each documented file showing
+# the direct and indirect include dependencies of the file with other documented
+# files.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+INCLUDED_BY_GRAPH = YES
+
+# If the CALL_GRAPH tag is set to YES then doxygen will generate a call
+# dependency graph for every global function or class method.
+#
+# Note that enabling this option will significantly increase the time of a run.
+# So in most cases it will be better to enable call graphs for selected
+# functions only using the \callgraph command.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+CALL_GRAPH = NO
+
+# If the CALLER_GRAPH tag is set to YES then doxygen will generate a caller
+# dependency graph for every global function or class method.
+#
+# Note that enabling this option will significantly increase the time of a run.
+# So in most cases it will be better to enable caller graphs for selected
+# functions only using the \callergraph command.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+CALLER_GRAPH = NO
+
+# If the GRAPHICAL_HIERARCHY tag is set to YES then doxygen will graphical
+# hierarchy of all classes instead of a textual one.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+GRAPHICAL_HIERARCHY = YES
+
+# If the DIRECTORY_GRAPH tag is set to YES then doxygen will show the
+# dependencies a directory has on other directories in a graphical way. The
+# dependency relations are determined by the #include relations between the
+# files in the directories.
+# The default value is: YES.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DIRECTORY_GRAPH = YES
+
+# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
+# generated by dot.
+# Note: If you choose svg you need to set HTML_FILE_EXTENSION to xhtml in order
+# to make the SVG files visible in IE 9+ (other browsers do not have this
+# requirement).
+# Possible values are: png, png:cairo, png:cairo:cairo, png:cairo:gd, png:gd,
+# png:gd:gd, jpg, jpg:cairo, jpg:cairo:gd, jpg:gd, jpg:gd:gd, gif, gif:cairo,
+# gif:cairo:gd, gif:gd, gif:gd:gd and svg.
+# The default value is: png.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_IMAGE_FORMAT = png
+
+# If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
+# enable generation of interactive SVG images that allow zooming and panning.
+#
+# Note that this requires a modern browser other than Internet Explorer. Tested
+# and working are Firefox, Chrome, Safari, and Opera.
+# Note: For IE 9+ you need to set HTML_FILE_EXTENSION to xhtml in order to make
+# the SVG files visible. Older versions of IE do not have SVG support.
+# The default value is: NO.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+INTERACTIVE_SVG = NO
+
+# The DOT_PATH tag can be used to specify the path where the dot tool can be
+# found. If left blank, it is assumed the dot tool can be found in the path.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+DOT_PATH =
+
+# The DOTFILE_DIRS tag can be used to specify one or more directories that
+# contain dot files that are included in the documentation (see the \dotfile
+# command).
+# This tag requires that the tag HAVE_DOT is set to YES.
+
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+# root by following a path via at most 3 edges will be shown. Nodes that lay
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Index: tags/siscone-3.0.4/AUTHORS
===================================================================
--- tags/siscone-3.0.4/AUTHORS (revision 0)
+++ tags/siscone-3.0.4/AUTHORS (revision 420)
@@ -0,0 +1,15 @@
+This program was written by Gregory Soyez(1) and Gavin Salam(2)
+
+Address: (1) IPhT, CEA Saclay
+ Orme des Merisiers, Bat 774
+ F-91191 Gif-sur-Yvette Cedex
+ France
+
+ (2) PH-TH, CERN, CH-1211 Geneva 23, Switzerland;
+ LPTHE, UPMC (Univ. Paris 6), 75252 Paris cedex 05, France.
+
+phone : +33 69 08 40 11
+ +41 22 767 2462
+
+email : soyez@fastjet.fr
+ gavin.salam@cern.ch
Index: tags/siscone-3.0.4/ChangeLog
===================================================================
--- tags/siscone-3.0.4/ChangeLog (revision 0)
+++ tags/siscone-3.0.4/ChangeLog (revision 420)
@@ -0,0 +1,1668 @@
+2018-10-01 Gregory Soyez <soyez@fastjet.fr>
+
+ Release of SISCone 3.0.4
+
+ * NEWS:
+ set the proper release date
+
+2018-09-26 Gregory Soyez <soyez@fastjet.fr>
+
+ * NEWS:
+ fixed typos (FJ release number, ...)
+
+ * configure.ac:
+ * Doxyfile:
+ * doc/html/*.html:
+ changed version to 3.0.4
+
+ * NEWS:
+ prepared for the release of SISCone 3.0.4
+
+ * siscone/spherical/Makefile.am:
+ added libsiscone as a dependence of libsiscone_spherical
+
+2018-09-19 Gregory Soyez <soyez@fastjet.fr>
+
+ * BUGS:
+ updated email addresses (mostly testing the new HEPforge system)
+
+2016-08-03 Gregory Soyez <soyez@fastjet.fr>
+
+ * configure.ac:
+ * Doxyfile:
+ * doc/html/*.html:
+ changed version to 3.0.4-devel
+
+2016-08-03 Gregory Soyez <soyez@fastjet.fr>
+
+ Release of SISCone 3.0.3
+
+ * doc/html/index.html.html:
+ * doc/html/download.html:
+ updated documentation with 3.0.3 release info
+
+ * NEWS:
+ prepared release notes for SISCone 3.0.3
+
+ * configure.ac:
+ * Doxyfile:
+ * doc/html/*.html:
+ changed version to 3.0.3
+
+ * setversion.sh:
+ updated script so that the version is properly set in
+ configure.ac, Doxyfile and the doc
+
+2016-05-23 Gregory Soyez <soyez@fastjet.fr>
+
+ * examples/Makefile.am:
+ replaced top_builddir by .. [consistency with the same trick
+ already used in the spherical source code
+
+ * siscone/Makefile.am:
+ * siscone/spherical/split_merge.h:
+ same sort of fix as in the "spherical" case to make sure that the
+ config.h file is correctly found in a VPATH build
+
+2016-05-22 Gregory Soyez <soyez@fastjet.fr>
+
+ * examples/Makefile.am:
+ added the top_builddir to the list of includes so that
+ siscone/config.h is found on a vpath build
+
+ * siscone/spherical/split_merge.h:
+ included <siscone/config.h> instead of "../config.h". This makes
+ life eassier for a vpath build
+
+2016-05-19 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ remove unneeded commented out code
+
+2016-03-29 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/split_merge.h:
+ * siscone/spherical/split_merge.h:
+ used SISCONE_USES_UNIQUE_PTR_AS_AUTO_PTR from config.h
+
+ * configure.ac:
+ put (SISCONE_)USES_UNIQUE_PTR_AS_AUTO_PTR in config.h
+
+ * siscone/siscone.{h,cpp}:
+ * siscone/spherical/siscone.{h,cpp}:
+ * siscone/defines.h:
+ PACKAGE_NAME -> SISCONE_PACKAGE_NAME
+ VERSION -> SISCONE_VERSION
+
+ * siscone/Makefile.am:
+ included config.h in the list of distributed headers.
+
+ * configure.ac:
+ * Makefile.am:
+ * m4/ax_config_header_h.m4: *** ADDED ***
+ prefixed the entries in config.h by SISCONE_ to avoid conflicts
+ with other packages if we want to include it in a header file.
+
+2016-03-16 Gregory Soyez <soyez@fastjet.fr>
+
+ * configure.ac:
+ * Doxyfile:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ bumped version number to 3.0.3-devel
+
+2016-03-16 Gregory Soyez <soyez@fastjet.fr>
+
+ Release of SISCone 3.0.2
+
+ * NEWS:
+ tweaked as suggested by Gavin
+
+ * doc/html/usage.html:
+ * doc/html/index.html:
+ backported a change done on the Hepforge pages
+
+ * doc/html/algorithm.html:
+ * doc/html/index.html:
+ * doc/html/sm_issue.html:
+ * doc/html/download.html:
+ * doc/html/perfs.html:
+ * doc/html/usage.html:
+ set version number to 3.0.2; updated a few links and mention the
+ new release
+
+ * Doxyfile:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ * configure.ac:
+ set version number to 3.0.2
+
+ * NEWS:
+ drafted for v3.0.2
+
+2016-03-10 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/split_merge.h:
+ * siscone/spherical/split_merge.h:
+ switched the auto_ptr into unique_ptr when
+ SISCONE_USES_UNIQUE_PTR_AS_AUTO_PTR is defined
+
+ * configure.ac:
+ fine-tuned the configure test for auto-ptr deprecation [for god
+ knows what reason, -Werror does not turn -Wdeprecated-declarations
+ into errors for gcc-5.2.1... so I replaced it with
+ -Werror=deprecated-declarations which does]
+
+ * configure.ac:
+ added a series of tests to check if the compiler considers
+ auto_ptr as deprecated and, if yes, supports unique_ptr
+
+2016-03-03 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/spherical/siscone.cpp:
+ * siscone/siscone.cpp:
+ restored the original _banner_ostr stream format flags after
+ printing out the banner
+
+ * siscone/spherical/split_merge.cpp:
+ * siscone/split_merge.cpp:
+ removed unnecessary (dead) code at the end of get_sm_var2()
+
+ * siscone/spherical/split_merge.h:
+ * siscone/spherical/split_merge.cpp:
+ * siscone/split_merge.h:
+ * siscone/split_merge.cpp:
+ initialised pass to CJET_INEXISTENT_PASS by default
+
+ * siscone/vicinity.cpp:
+ initialised ve_list before calling set_particle_list
+
+2016-02-29 Gregory Soyez <soyez@fastjet.fr>
+
+ * doc/html/download.html:
+ updated link to html browsing og the svn repo
+
+ * doc/html/usage.html:
+ updated a couple of links to the FJ doxygen pages
+
+ * configure.ac:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ * Doxyfile:
+ switched version number over to 3.0.2-devel
+
+2016-02-29 Gregory Soyez <soyez@fastjet.fr>
+
+ Release of SISCone 3.0.1
+
+ * NEWS:
+ * CHECKLIST:
+ * Doxyfile:
+ * configure.ac:
+ * doc/html/*.html:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ prepared for the release of SISCone 3.0.1
+
+2016-02-24 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/spherical/geom_2d.h:
+ get_theta_cell(...): fixed rounding issue for theta==pi
+ [Bug reported by Andrii Verbytskyi, see
+ 2016-02-SphericalSISCone-throws in the FastJet issue tracker]
+
+ * siscone/spherical/geom_2d.cpp:
+ add_particle(...): made sure the full phi range is included for
+ theta=0 or theta=pi
+
+ * siscone/spherical/geom_2d.h:
+ fixed typo in comment:
+
+ * siscone/spherical/split_merge.cpp:
+ * siscone/split_merge.cpp:
+ fixed bad variale in debugging outpout and added debugging info
+
+
+2014-09-10 Gregory Soyez <soyez@fastjet.fr>
+
+ * Doxyfile:
+ * configure.ac:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ set version number to 3.0.1-devel
+
+2014-09-09 Gregory Soyez <soyez@fastjet.fr>
+
+ * SISCone 3.0.0
+
+ * doc/html/usage.html:
+ * doc/html/perfs.html:
+ added a brief discussion about the algogithm complexity.
+
+2014-09-09 Gavin Salam <gavin.salam@cern.ch>
+
+ * NEWS:
+ * doc/html/index.html:
+ * doc/html/usage.html:
+ small phrasing changes
+
+2014-09-09 Gregory Soyez <soyez@fastjet.fr>
+
+ * configure.ac:
+ * NEWS:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.cpp:
+ * Doxyfile:
+ preparing for the release of SISCone 3.0.0
+
+ * doc/html/*.html:
+ changed the version number to 3.0.0
+ included the release information
+ updated Gavin's email address
+
+ * doc/html/usage.html:
+ added a description of SISCone with progressive removal
+
+ * Doxyfile:
+ Updated for more recent versions of doxygen [ran doxygen -u from
+ doxygen 1.8.8]
+
+2014-09-04 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/split_merge.cpp:
+ * siscone/spherical/split_merge.cpp:
+ in progressive removal mode, set the 'pass' index associated to
+ each jet to the index of the iteration at which it has been
+ obtained
+
+ * siscone/siscone.h:
+ * siscone/siscone.cpp:
+ * siscone/spherical/siscone.h:
+ * siscone/spherical/siscone.cpp:
+ put the duplicated code for initialisation in a spearate method
+
+ * siscone/split_merge.cpp:
+ fixed a bug introduced in a recent commit: jet_candidate.sm_var2
+ was not assigned prolperly for non-user-defined scales
+
+ * siscone/spherical/split_merge.cpp:
+ * siscone/spherical/split_merge.h:
+ propagated recent modifications of SISCone to the spherical
+ version:
+ . reworked some comments (including the misplaced one about
+ collinear-safety)
+ . default for SM_var2_hardest_cut_off changed from -1 to
+ -numeric_limits<double>::max() [largely redundant]
+ . added support for user-defined scale when run in
+ "progressive-removal mode"
+
+ * siscone/split_merge.h:
+ . removed temporary comments at the top of the file
+ . added a dummy virtual dtor to Csplit_merge::Cuser_scale_base
+
+2014-09-04 Gavin SALAM <gavin.salam@cern.ch> + Gregory
+
+ * siscone/split_merge.cpp:
+ SM_var2_hardest_cutoff no longer applied to PR case.
+
+ Modified sm_var2 in (PR) _user_scale case to now be the signed
+ square of the scale variable (to properly handle negative values
+ of the scale).
+
+ default for SM_var2_hardest_cut_off changed from -1 to
+ -numeric_limits<double>::max(); (this change is largely redundant,
+ given that SM_var2_hardest_cutoff is no longer used for PR, while
+ the SM case only allows default scale choices, which are all
+ positive definite).
+
+ replaced <math.h> with <cmath>;
+
+ * siscone/split_merge.h:
+ default Cuser_scale_base::is_larger(...) now uses cached values of
+ scale in Cjet.
+
+ small fixes to a number of comments, including misplaced warning
+ about collinear unsafety.
+
+ * siscone/siscone.h:
+ small changes to comments to clarify situation of an unused
+ variable in progressive removal
+
+2014-09-04 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/split_merge.cpp:
+ * siscone/siscone/split_merge.h:
+ added material to support user-defined scale choices in
+ progressive-removal mode.
+
+ One needs to overload the Csplit_merge::Cuser_scale_base class and
+ pass a pointer to the split-merge using set_user_scale().
+
+2014-09-03 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/spherical/siscone.h:
+ * siscone/spherical/siscone.cpp:
+ * siscone/spherical/split_merge.h:
+ * siscone/spherical/split_merge.cpp:
+ ported "siscone with progressive removal" to the spherical
+ coordinates version
+
+ * siscone/siscone.h:
+ fixed typo in variable name
+
+ * siscone/split_merge.cpp:
+ imposed the SM_var2_hardest_cut_off in the progressive case too
+ + made sure at least one candidate jet was found
+
+ * siscone/siscone.h:
+ * siscone/siscone.cpp:
+ added compute_jets_progressive_removal(...) which implements a
+ "progressive removal" version of SISCone. This successively
+ computes stable cones and removes the hardest stable cone as a jet
+ until no particles are left or no stable cones are found.
+
+ Question: what do we do with 'protocones_list'? [for the time
+ being, it's left empty]
+
+ * siscone/split_merge.h:
+ * siscone/split_merge.cpp:
+ added 'add_hardest_protocones_to_jets' which computes the hardest
+ of the stable cones passed as arguments, declares it as a jet and
+ removes its content from the remaining list of particles. This
+ should be used instead of add_protocones()+perform() if one wants a
+ progressive-removal version of SISCone.
+
+2013-04-09 Gregory Soyez <soyez@fastjet.fr>
+
+ * doc/html/index.html:
+ fixed trivial typo (developper -> developer)
+
+ * switched version number to 2.0.7-devel
+
+2013-04-09 Gregory Soyez <soyez@fastjet.fr>
+
+ * Release of SISCone 2.0.6
+
+ * NEWS, doc/html/index.html
+ set the release date to April 9th
+
+ * Doxyfile
+ Set version number to 2.0.6
+
+2013-04-08 Gregory Soyez <soyez@fastjet.fr>
+
+ * doc/html/*.html:
+ * configure.ac:
+ switched version number to 2.0.6
+
+ * NEWS:
+ preparing for SISCone 2.0.6
+
+ * setversion.sh: minor fix (used bash instead of sh)
+
+ * CHECKLIST: *** ADDED ***
+ helper checklist for the release process
+
+2013-04-06 Gavin Salam <gavin.salam@cern.ch>
+
+ * configure.ac:
+ updated minimal required autotools version to 2.63
+
+2013-02-05 Gavin Salam <gavin.salam@cern.ch>
+
+ * autogen.sh: tried to be more tolerant of different libtool
+ versions (some take --version, others -V). Still have problems
+ on OS X 10.8 with macports , but autoreconf works fine.
+
+ * configure.ac:
+ replaced AM_CONFIG_HEADER with with AC_CONFIG_HEADERS, following
+ error with autoconf 2.69 on OS X 10.8 with macports.
+
+2013-02-04 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/Makefile.am:
+ do not install config.h
+
+ * siscone/spherical/Makefile.am:
+ fixed directory for headers installation for the spherical
+ version of SISCone
+
+2012-01-17 Gregory Soyez <soyez@fastjet.fr>
+
+ * NEWS:
+ SISCone 2.0.5
+
+ * NEWS:
+ * configure.ac:
+ * Doxyfile:
+ prepared for the release of SISCone 2.0.5
+
+ * siscone/spherical/Makefile.qm:
+ used $(includedir) instead of $(prefix)/include
+
+2012-01-13 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/Makefile.am:
+ used $(includedir) instead of $(prefix)/include
+
+2011-11-25 Gregory Soyez <soyez@fastjet.fr>
+
+ * NEWS:
+ SISCone 2.0.4
+
+ * NEWS:
+ updated in preparation for the 2.0.4 release
+
+ * doc/html/home.png: *** ADDED ***
+ * doc/html/usage.html:
+ * siscone/siscone_error.h:
+ * doc/html/index.html:
+ fixed typos; updated html links.
+
+ * configure.ac:
+ * Doxyfile:
+ * doc/html/*.html:
+ updated the version number to 2.0.4 and the release information
+
+ * siscone/spherical/siscone.cpp:
+ * siscone/spherical/siscone.h:
+ * siscone/siscone.cpp:
+ * siscone/siscone.h:
+ allowed to redirect the banner to a different stream than cout
+
+2011-11-16 Gregory Soyez <soyez@fastjet.fr>
+
+ * examples/test.cpp:
+ cast a vector size (of type size_t) onto unsigned int to avoid a
+ compiler warning (on either 32 or 64-bit machines)
+
+2011-11-15 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * AUTHORS:
+ updated my address.
+
+2011-11-15 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/protocones.cpp (is_inside, proceed_with_stability):
+ * siscone/spherical/split_merge.cpp (init):
+ * siscone/split_merge.cpp (init):
+ * siscone/siscone_error.h:
+ * siscone/area.cpp (compute*_areas):
+ renamed or commented out a few local variables and method
+ arguments to avoid shadowing class members (gcc -Wshadow)
+
+ * examples/spherical.cpp:
+ * examples/sample.cpp:
+ removed unused argc, argv parameters
+
+ * examples/spherical.cpp:
+ * examples/sample.cpp:
+ * examples/times.cpp:
+ * examples/test.cpp:
+ * examples/area.cpp:
+ * examples/main.cpp:
+ * siscone/spherical/split_merge.cpp (save_contents, show):
+ * siscone/split_merge.cpp (save_contents, show):
+ * siscone/quadtree.cpp (save, save_leaves):
+ got rid of a few format warnings by replacing %le and %lf by %e
+ and %f (the l prefix applying to int and unsigned int) + a couple
+ of signed/unsigned mismatches (%d -> %u)
+
+ * configure.ac:
+ switched version number to 2.0.4-devel
+
+2011-10-05 Gregory Soyez <soyez@fastjet.fr>
+
+ * NEWS:
+ SISCone 2.0.3
+
+ * AUTHORS:
+ updated addresses and phone numbers
+
+ * configure.ac:
+ * Doxyfile:
+ * doc/html/*.html:
+ updated the version number and the release information
+
+ * Doxyfile:
+ removed the treeview
+
+ * siscone/reference.cpp:
+ removed redundant operator + (following a gcc warning)
+ Checked with FastJet's regression check that it was indeed not
+ used
+
+ * siscone/spherical/protocones.cpp:
+ removed an unused variable
+
+2011-08-09 Gregory Soyez <soyez@fastjet.fr>
+
+ * siscone/spherical/split_merge.h:
+ fixed the description of E_tilde. It was
+ sum of E_i [ 1 + sin^2(theta_iJ) ]
+ but in practice we used
+ sum of E_i [ 1 +|p_i x p_J|^2/(|p_i|^2 E_J^2)]
+ as mentioned further down in the ChangeLog (that avoids
+ potential issues when a protojet has a zero 3-momentum)
+
+2011-05-17 Gregory Soyez <soyez@fastjet.fr>
+
+ * configure.ac, Doxyfile & NEWS:
+ SISCone 2.0.2
+
+2010-10-27 Gregory Soyez <soyez@cern.ch>
+
+ * siscone/makefile.static:
+ recursed make clean in the spherical dir
+
+ * siscone/spherical/makefile.static:
+ included main siscone header directory
+
+ * siscone/siscone.cpp, siscone/spherical/siscone.cpp:
+ The config.h header should be present from autoheader in the
+ autotools build and from the sed command in the main
+ makefile.static for build using the static makefiles.
+
+2009-05-29 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * configure.ac & NEWS:
+ SISCone 2.0.1
+
+2009-05-28 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * Doxyfile (PROJECT_NUMBER):
+ doc/html/*.html:
+ switched the version number to 2.0.1
+
+ * INSTALL (Notes):
+ fixed the comment on the static/shared default build
+
+ * configure.ac:
+ enabled shared libs by defaut (following a long discussion
+ regarding static vs. shared libraries, we finally decided to
+ make a minimal modification compared to the previous release,
+ i.e. keep shared libraries on)
+
+2009-05-25 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * configure.ac:
+ switched back to static libraries
+
+ * siscone/Makefile.am:
+ examples/Makefile.am:
+ siscone/spherical/Makefile.am:
+ replace a few ${var} by $(var) to be more compatible
+ with Makefile rules
+
+
+2009-05-01 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/spherical/hash.cpp (siscone_spherical):
+ renamed _R into _radius (problem with some Mac systems).
+ Note: some of the comments were mentioning R2 as a parameter
+ rather than R, so this has been fixed at the same time.
+
+ * configure.ac:
+ build shared libs by default
+ This is a bug-fix for FastJet that now uses shared libs by
+ default too
+
+ * configure.ac & Doxyfile:
+ switched version number to 2.0.1-devel
+
+2009-04-17 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * NEWS & configure.ac:
+ SISCone 2.0.0
+
+ * doc/html/index.html:
+ Doxyfile:
+ configure.ac:
+ switched the version number to 2.0.0
+
+2009-03-17 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/split_merge.cpp (siscone):
+ moved the computation of the rapidity limits AFTER the
+ exclusion of the particles with pz>=E
+
+
+2009-03-12 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * configure.ac:
+ switched version to 2.0-devel
+
+ * NEWS:
+ updated to include the new things in the upcoming release
+
+ * Doxyfile:
+ updated together with an additional bunch of doxygen-compliant
+ comments in the source files
+
+
+2008-08-06 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/siscone.cpp (siscone):
+ make sure that the full 4-vector information is included in the
+ protocones list.
+
+
+2008-07-29 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/siscone.cpp:
+ siscone/spherical/siscone.cpp:
+ check that the config.h file is available.
+ Otherwise, use fixed values for PACKAGE and VERSION.
+
+
+2008-07-23 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/spherical/siscone.h (siscone_spherical):
+ set E_tilde as the default SM variable.
+
+ * siscone/spherical/split_merge.{h,cpp} (siscone_spherical):
+
+ addressed the issue of IRC safety related to the choice of the
+ split-merge ordering variable. We kept E (an unsafe choice) for
+ its simplicity and added E_tilde defined as
+
+ / |p_i X p_J|^2 \
+ \sum_{i\in J} E_i | 1 + --------------- |
+ \ |p_i|^2 E_J^2 /
+
+ The use of E_J instead of p_J in the denominator prevents the
+ case where jets have zero momentum (e.g. monster jets with
+ momentum conservation)
+
+ Note that this variable is only used for the ordering; the
+ computation of the overlap is always using the energy.
+
+
+2008-07-18 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/siscone.cpp (siscone)
+ siscone/spherical/siscone.cpp (siscone_spherical):
+ package_name() returns PACKAGE_NAME, not VERSION!
+
+ * siscone/spherical/Makefile.am:
+ added a path for siscone/config.h to be correctly included
+
+ * siscone/Makefile.am:
+ prevent config.h from being shipped with the distribution
+
+
+2008-07-07 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/spherical/split_merge.cpp (siscone_spherical):
+ transformed the pt2 cut-off on particles into an
+ energy (squared) cut-off.
+
+
+2008-07-07 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * Spherical version included in the main trunk
+ (see below for details)
+
+ * Copied the 'spherical branch' into the siscone/spherical
+ folder.
+ Copied the sample program into the example folder.
+ Imported the ChangeLog from the branch
+
+ Steps remaining in the main trunk: (. = todo, - = done)
+ - updating the makefiles
+ - deleted the "defines.h" file in the subdir
+ the main one is used.
+ - tested (make distcheck + sample running)
+
+ Questions:
+ - do we also copy the unchanged files? (It will mess a bit the
+ filenames but they concerns material hidden to the end-user,
+ so I'd keep them in the trunk
+ It concerns circulator, reference, ranlux and siscone_error.
+ - do we remove the quadtree in the spherical dir?
+ (I'd say 'yes', not done currently)
+ - keep the "unused" files in the branch? (area, quadtree, ...)
+
+
+2008-07-02 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * started the process of merging the spherical version of SISCone
+ into the main trunk. The new version will be inserted in the
+ "siscone/spherical" directory. We shall put it under the
+ 'siscone_spherical' namespace and rename the relevant classes
+ using a 'CSph' prefic instead of the 'C' prefix used in the main
+ trunk.
+ Steps to be done in the branch: (. = todo, - = done)
+ - move the relevant files in a 'siscone/spherical' directory
+ - add a siscone/Makefile.am in the branch (+small updates)
+ - change the namespace
+ - rename the classes and update the names in the code
+ Note that some of the classes have been kept from the main
+ version (e.g. everything in reference.h, siscone_error.h +
+ isolated classes like circulator, two_vector). This should
+ not affect the end-user.
+ - in the examples, move the main sample into a 'spherical' one
+ - test on the branch
+ DONE.
+
+2008-06-16 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/vicinity.cpp (siscone): revised the normalisation of the
+ cocircular range.
+
+ * siscone/split_merge.cpp (siscone): recomputed the norm of
+ the result of a collinear merging. This is required as
+ the norm is used in stable-cone search and not recomputed
+ automatically.
+
+ * siscone/protocones.cpp (siscone): normalised directions
+ used to determine the angles. This might well be the reason
+ of the co-circular problem.
+
+ * siscone/geom_2d.cpp (siscone): removed an unused variable
+
+
+2008-06-14 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * Note: this version passed ~3e8 safety tests (including arcs,
+ soft particles, reordering and single/multi-pass).
+
+ * siscone/vicinity.cpp (siscone): added cocirc-tests
+ WARNING: this is a naive adaptation from the cylindrical case.
+
+ * siscone/momentum.h (siscone): reverted most of the last
+ modification: since the simple computation using a cos()
+ requires the computation of the norm (not its squared because
+ the sign of the cos matters) it is most complicated than the one
+ with the tangent. Note that we're free of the problem mentionned
+ below as the only place where it can happen is in the
+ computation of the vicinity and there we compute distances
+ internally rather than calling is_closer.
+ Finally, we've added a is_closer_safe with the computation
+ using te cosine.
+
+2008-06-13 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+ * siscone/vicinity.cpp (siscone):
+ pre-added co-circularity management
+
+ * siscone/momentum.h (siscone):
+ replaced the tangent used in distances comparison by
+ a cosine (the tangent is more precise at small R but
+ we'll probably never get down to that small values of R).
+ The reason for the replacement is that it gives wrong
+ results for vicinity computation for 2R>pi/2.
+ This present computation is also faster (no x-product).
+
+ All calls to that function have been updated too.
+
+
+2008-06-12 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * Description: this is the first complete adaptation to the
+ SISCone jet-search using spherical coordinatee.
+ This branch is motivated by potential applications to
+ cosmic-rays and follows a request by Yvonne Küssel
+ <Yvonne.Kuessel@gmx.de>
+
+ * Summary of modifications:
+ - use the distance on a sphere instead of the eta-phi one This
+ is the most important change and comes with
+ modifications... well... ... everywhere. Most of the infos
+ about the distance are in the momentum.{h,cpp} files. There
+ are other important pieces when computing the candidate
+ centres (in vicinity.cpp). And the theta_phi range (previously
+ eta_phi!) in geom2d.cpp has also been relooked.
+ - The spit--merge(SM) uses the energy instead of pttilde by
+ default for the ordering
+ - The final jets ae ordered in E instead of pt.
+ - we don't remove particles with infinite rapidity (both in SC
+ search and SM)
+ - for the cone consistency tests, we use |px|+|py|+|pz| instead
+ of |px|+|py|
+ - we have removed the cut on soft particles in
+ Csplit_merge::merge_collinear_and_remove_soft() since it was
+ mainly used for area speed up.
+ - Csplit_merge::use_pt_weighted_splitting is replaced by
+ Csplit_merge::use_E_weighted_splitting when it is defined, the
+ weight is of course 1/E^2 instead of 1/pt^2
+ - To emphasise the fact that this is not the main SISCone trunk,
+ we've added one sentence in the header of every file and a
+ WARNING in the SISCone banner.
+
+ * Still to be done
+ - implement co-circularity (currently the range is set to 0)
+ - in the split--merge, check the precision of the collinearity
+ test?
+
+ * Other points to think about
+ - for the split of 2 protojets, we're currently making many
+ calls to a full distance computation. This can surely be
+ improved when no weighting is asked...
+ - completely remove the quadtree?
+ - remove the area support?
+ - remove the Ctheta_phi range?
+ or improve it (the cell initialisation assume a square shape,
+ not a circle, but already with a square, the geometry is
+ rather involved)
+
+ * Final word: still need a whole bunch of tests (noticeably IRC
+ safety, speed). Note that the stable-cone search has been
+ checked "graphically".
+
+
+2008-05-20 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/hash.cpp (siscone):
+ Adapted the size of the hash to scale like Nn(=N^2R^2) instead
+ of N^2. This allows to save a fair amount of memory.
+
+
+2008-05-16 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * siscone/defines.h
+ siscone/hash.{h,cpp} (siscone)
+ siscone/protocones.{h,cpp} (siscone):
+ siscone/siscone.{h,cpp} (siscone):
+ add some debug information about the occupancy of the hash
+ when DEBUG_STABLE_CONES is defined
+
+ * examples/test.cpp: update the code to use Csiscone directly
+ instead of separate calls to stable cone search and split--merge
+ stage. This should be less confusing for end-users.
+
+2008-05-15 Gregory Soyez <gsoyez@quark.phy.bnl.gov>
+
+ * configure.ac:
+ in the last CXXFLAGS fix, the default has been set at a wrong
+ place (practically, CXXFLAGS was set to the system default value
+ -O2 -g and thus not replaced with our local default).
+ This is fixed now.
+
+2008-03-24 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * configure.ac:
+ fix CXXFLAGS in such a way as to allow the user to set their own
+ default.
+
+
+2008-03-17 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * siscone/defines.h:
+ siscone/siscone.h/cpp
+ examples/option.cpp
+ BUGS:
+ Because of potentil conflicts with other packages, the
+ tags defined in config.h are no longer included in
+ defines.h but only in SISCone source files.
+ As a practical consequence, the program name and version
+ number are now accessed through siscone_package_name() and
+ siscone_version() both defined in siscone.h and inside
+ the siscone namespace. See examples/options.cpp for
+ an example.
+ This solves the corresponding bug reported by Seuster.
+
+
+2008-03-15 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * BUGS:
+ added entry related to PACKAGE/VERSION/etc reported by Seuster.
+
+2008-03-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * siscone/split_merge.h/cpp (siscone):
+
+ This is a non-negligible modification: we have added the
+ possibility to modify the way particles are split during the
+ split-merge step.
+ Assume one has to split protojets 1 and 2. The standard split
+ associates a common particle j to the closest centre
+ i.e. compares the distances D_{1j} vs. D_{2j}.
+ Now, by calling Csplit_merge::set_pt_weighted_splitting(true),
+ it is possible to perform the splitting according to the anti-kt
+ distance i.e. comparing D_{1j}/k_{t1} vs. D_{2j}/k_{t2}.
+ This new option should allow to produce more
+ rigid (soft-resilient) jets.
+ Note that the default is to use the standard distance comparison
+ so backward compatibility is not broken.
+
+
+2008-03-11 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * siscone/area.cpp (siscone):
+ the jet+area finding now really returns the number of jets
+ as does the standard clustering
+
+ * siscone/area.cpp (siscone):
+ don't include ghosts in stable-cone search when only the
+ passive area is requested.
+ This is a huge speed improvement as the execution time (when
+ only passive area is requested) is now (with Ntot = N+Nghosts)
+ O(N^2 log(N) + Ntot^2)
+ instead of
+ O(Ntot^2 log(Ntot) + Ntot^2)
+
+ * configure.ac:
+ switched the main trunk to SISCone-1.4.0-devel
+
+
+2008-03-07 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * configure.ac:
+ switched version to 1.3.1
+
+2008-01-17 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * configure.ac:
+ switched version number over to 1.3.1-devel
+
+2008-01-15 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * siscone/geom_2d.h (M_PI):
+ added definition of M_PI if needed (VC compilation)
+
+ * siscone/protocones.cpp (siscone):
+ added the algorithm header (VC compilation)
+
+2007-11-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * NEWS & configure.ac:
+ SISCone 1.3.0
+
+
+2007-11-10 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * configure.ac:
+ * examples/Makefile.am:
+ * examples/events/Makefile.am:
+ made sure some sample events were included in the dist
+
+2007-11-07 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * configure.ac:
+ switched +="" to A=A"" to eliminate an error on mac
+
+2007-10-24 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * examples/options.cpp: fix a missing "siscone/" in header include
+
+ * examples/Makefile.am: fix a problem with make distcheck
+
+ * configure.ac: the --enable-shared cmd-line option is already
+ handled by libtool. We just need to add AM_DISABLE_SHARED to
+ disable the shared lib by default (can still be changed by using
+ --enable-shared)
+ Also, we set the minimal version of autoconf to 2.57.
+
+ * examples/Makefile.am: do not install anything (just build
+ examples locally)
+
+ * examples/main.cpp (main): print a more specific error message
+ when the event file cannot be opened
+
+
+2007-10-03 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * siscone/defines.h: read available information from config.h
+
+ * In examples, include headers from the 'siscone' folder
+
+ * Move the src folder into a new 'siscone' folder
+
+
+2007-10-02 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * add configure script for the build process. This comes with a
+ bunch of new files: autogen.sh, configure.ac, and a Makefile.am
+ in each directory. See the INSTALL files for more details
+
+ * replace each Makefile by makefile.static
+ Makefile-based build is now made through
+ make -f makefile.static
+
+ * examples/area.cpp: add a sample program for SISCone jet area
+ computation
+
+
+2007-06-24 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/defines.h: SISCone 1.2.0
+
+
+2007-06-15 Gregory Soyez <g.soyez@ulg.ac.be>
+
+
+ * src/geom_2d.h/cpp: use a 32x32 eta-phi-plane tiling. The range
+ is then defined by two binary fields. This allows easy overlap
+ test and merging. For protojets splitting, the new ranges are
+ built by adding particles one-by-one.
+
+ * src/split_merge.cpp (siscone):
+ - align code with the modifications in geom_2d.h/cpp
+ - the output of save_contents has slightly been improved
+
+ * src/area.h/cpp: add methods to compute only the active or passive
+ area
+
+ * examples/main.cpp: add pass-by-pass statistics in the verbose
+ output
+
+ * examples/options.cpp: fix bug when passing an unknown long
+ option to getopt_long
+
+
+2007-06-02 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * examples/sample.cpp: add a few lines to show how one can browse
+ the output jets of compute_jets.
+
+ * examples/times.cpp: only save runtime using the siscone class
+ instead of a separate determination.
+
+2007-05-09 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ soft_pt2_cutoff -> stable_cone_soft_pt2_cutoff
+ fixed infinite loop for non-zero stable_cone_soft_pt2_cutoff
+
+2007-05-09 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/split_merge.cpp|h:
+ When building the list of particles to be passed to stable-cone
+ search, allow to remove particles below a pt2 threshold
+ soft_pt2_cutoff.
+
+2007-04-27 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * src/geom_2d.cpp:
+ corrected bugs in range_union -- now passes test that 1000
+ events are identical to what we had previously.
+
+2007-04-26 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/split_merge.cpp (siscone): add range support to the
+ split--merge. When computing overlap, we first check that the
+ two ranges overlap. In splitting, ranges are set to the parent
+ ranges. In merging, range is set as the union of the parent
+ ranges.
+
+ * src/split_merge.h: add a range variable to the Cjet class
+
+ * src/geom_2d.cpp/h (siscone): add the Ceta_phi_range to handle
+ covering ranges in the ete-phi plane. This goes with a function
+ to test overlap and another to compute union.
+
+ * src/momentum.h: Move geometry tools into geom_2d.h (new file)
+
+
+2007-04-24 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo
+
+ * src/defines.h (VERSION):
+ updated version number to 1.1.2-devel
+
+ * src/split_merge.cpp (include):
+ moved test on SM_var2_hardest_cut_off to beginning of loop, to
+ ensure that we don't get a first jet that's below the cutoff.
+
+2007-04-20 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/split_merge.h: remove the "protected" attribute for
+ 'SM_var2_hardest_cut_off' for easier inclusion in fastjet. Note
+ however that the 'protected' declaration in the previous version
+ was used to prevent from dangerous usage of the variable. This
+ is still applicable now!
+
+2007-04-18 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/area.cpp: Add a parameter '_hard_only' which allow to
+ compute only the hard jets area (without the purely ghosted
+ ones.
+
+ * src/split_merge.h/cpp: Add a cut-off on the SM_var of the
+ hardest protojet. This is useful for computation of the area of
+ the hard jets without computing the purel ghosted ones. Note
+ that this cut-off is colinear-unsafe so has to be used with
+ great care.
+
+2007-04-13 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/area.cpp: add Carea, the class to compute jet area
+
+2007-03-16 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * SISCone 1.1.1 (tags/siscone-1.1.1)
+
+2007-03-15 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * doc/html/usage.html: update the html doc for the recent
+ modifications of the split-merge algorithm.
+
+ * src/split_merge.cpp: improve the recomputation method when two
+ jets are very close in the ordering when SM var is set to SM_Et
+
+2007-03-15 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ modified fix to multiple-pass bug, in hope of being minimally
+ sensitive to rounding errors
+
+2007-03-15 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/siscone.h: set the default number of passes to 0
+
+ * examples/main.cpp: adding two command line parameters to the
+ siscone application:
+ - npass controls the number of passes (0 by default)
+ - sm controls the choice for the split--merge variable
+
+2007-03-14 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/momentum.h: add Et (inline) member function
+
+ * src/siscone.h: remove backward-compatibility computation members to
+ make things more clear.
+
+ * src/split_merge.cpp:
+ - fix multiple-pass bug
+ - add Et SM variable management
+
+2007-03-14 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ put an assert for zero-size jets (common sign of a bug...);
+ ensured that "recomputed" protocones (with full momentum) also
+ have their eta-phi recalculated.
+
+2007-03-12 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ added some more debugging output.
+
+2007-03-10 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ fixed some typos and a bug in the EPSILON_SPLITMERGE case for
+ pt-tilde.
+
+2007-03-09 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/siscone.h: The default value for the SM variable is set to
+ pttilde
+
+ * src/split_merge.h/cpp: Update the split--merge procedure so that
+ it takes into account the choice for the split--merge
+ variable. Among the four choices, (pt_tilde, mt, pt and Et),
+ pt_tilde is the default (mt and pt can lead to IR unsafety). Et
+ is not yet implemented. We strongly advise to keep default value.
+
+2007-03-09 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/siscone.h|cpp:
+ * src/split_merge.h|cpp:
+ introduced an enum, Esplit_merge_scale (naming convention in
+ analogy with the leading "C" for classes), which contains values
+ SM_pt, SM_Et, SM_mt, SM_pttilde, and put in routines that take
+ the enum (as well as leaving in old ones)
+
+2007-03-06 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ added transverse mass to info printed out about protojets with
+ the debug mode on (helpful in investigating limiting IR cases)
+
+2007-03-02 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * SISCone 1.1.0 (tags/siscone-1.1.0)
+
+2007-03-02 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ transformed a quiet error on illegal f values into a throw.
+
+ * src/siscone.cpp:
+ throw an error on illegal R values.
+
+2007-03-01 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp|h:
+ added a new member variable, most_ambiguous_split, which records
+ the degree of ambiguity of the most ambiguous decision about
+ attributing a particle to one or other jet during a split step.
+ Useful for testing purposes.
+
+2007-03-01 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/split_merge.cpp: set the full momentum
+ information on stable cones when we add them
+ to the protojet list
+
+ * src/siscone.h,cpp: add comments concerning the
+ split_merge_on_transverse_mass parameter
+
+ * src/defines.h (VERSION): set to 1.1.0beta
+
+ * src/split_merge.cpp (siscone):
+ - set ptmin as a real pt cut-off (independent on the
+ choice of variable for the SM)
+ - code cleaned (involves other files e.g. defines.h
+ momentum.h/cpp, siscone.h/cpp)
+
+ * set the website to the HEPForge one in headers
+
+ * replaced 'content' by 'contents' everywhere
+ WARNING: it implies Cjet::contents and
+ Csplit_merge::save_contents
+
+ * src/quadtree.cpp (siscone): replace 'childs' with 'children'
+
+
+2007-02-21 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/protocones.cpp (siscone):
+ - remove all functions that are no longer necessary and replace
+ them by their new version. This includes the computatin of the
+ cone content, its re-computation, the check for co-circularity
+ and the test for stable cones in the co-circular situations.
+ - add a few comments of potentially tricky points.
+ - remove "cout" statements.
+ - remove 'largest_cocircular_range' which is no longer used
+
+ * src/vicinity.h:
+ - "largest_cocircular_range" removed.
+ - quadtree related stuff removed. As a consequence,
+ 'build_from_list' is renamed 'build'. The usage of the
+ quadtree can now only be used in
+ 'Cstable_cone::proceed_with_stability' hence, the USE_QUADTREE
+ define has been renamed USE_QUADTREE_FOR_STABILITY_TEST.
+ - Comments aligned to make the code clearer.
+
+ * src/momentum.h: Add mass() and mass2() member functions to
+ Cmomentum().
+ Put inline functions in the header rather than in the source
+ file.
+
+ * add C++ mark ("// -*- C++ -*-") in the headers where it was
+ missing
+
+2007-02-20 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ enhanced check on infinite rapidities to include also
+ meaningless rapidities.
+
+ * src/split_merge.cpp|h:
+ * src/siscone.cpp:
+ sorted out an issue on multi-pass runs caused by earlier fix for
+ transverse mass ordering.
+
+2007-02-20 [am-pm] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/split_merge.cpp:
+ fixed a bug that appeared once split_merge_on_transverse_mass
+ got moved into the Csplit_merge_ptcomparison class
+
+ * src/protocones.cpp|h:
+ introduced compute_cone_contents_nodist(), which calculates the
+ initial cone contents by circulating around all in/out
+ operations and collecting the net result --- this avoids any
+ distance calculations and so removes a potential source of
+ rounding error. (Any remaining rounding error is dealt with by
+ cocircularity tests).
+
+ * src/defines.h
+ added more info about the meaning of the different EPSILON
+ scales.
+
+2007-02-19 [evening] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/defines.h:
+ introduced const bool split_merge_on_transverse_mass, which
+ determines whether the split merge occurs on transverse mass
+ instead of pt -- the latter turns out to be IR unsafe in
+ mom-conserving events for moderately large values of R (R>1)
+
+ * src/split_merge.cpp:
+ implemented the split-merge ordering on transverse masses,
+ including the limit of there being small differences.
+
+ * src/momentum.h:
+ introduced perpmass2() which returns the transverse mass,
+ pt^2+m^2
+
+
+2007-02-19 [pm] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ NB: seg-faults are being seen sporadically when fastjet writes its
+ description & need to be understood (but very rare and valgrind
+ gives nothing on small numbers of events...)
+
+ * src/defines.h:
+ added optional #define EPSILON_SPLITMERGE, which if defined,
+ sets a threshold for pt differences below which the ordering is
+ determined from the explicit particle content...
+
+ * src/split_merge.cpp|h:
+ trying to introduce more "exact" pt comparison in split merge to
+ deal with multiple scales -- this involves a new
+ Csplit_merge_ptcomparison class which allows the set to carry
+ out comparisons while making use of knowledge about the particle
+ momenta inside the split_merge class.
+
+ * src/circulator.h:
+ added != and == comparison operators.
+
+ * src/protocones.h|cpp:
+ added Cstable_cones::test_cone_cocircular_p3() for carrying out
+ a p^3 check of stability -- NB seems a bit slower for small p,
+ but obviously much better for large p... Tests of 2*10^5
+ particles show no errors, longer tests to be done later...
+
+2007-02-19 [am, early pm] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/vicinity.h|cpp:
+ introduced the Cvicinity_inclusion class to allow one to carry
+ out checks both on the inclusion in the cone and in its
+ "cocircular" border. Made corresponding changes elsewhere.
+
+ * src/protocones.h|cpp:
+ wrote new_cocircular_check() and ran a certain number of tests
+ on it; currently it is this one that is being called from
+ update_cone(), but it still uses the original 2^p routine for
+ actually checking the cone status.
+
+ * src/[elsewhere]
+ added a lot of (now commented) debugging statements to help fix
+ bugs in the new_cocircular_check().
+
+2007-02-18 [pm - later] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/circulator.h: *** ADDED ***
+ class for a circulator, used below.
+
+ * src/protocones.(h|cpp):
+ wrote prepare_cocircular_lists(), and checked that it's working
+ sensibly on some simple test events; also added code for
+ esetablishing the largest cocircular range among the children of
+ the current parent (should be used later to establish a more
+ reliable in/out status).
+
+ NB: the call to this function has added another 1-2% slowdown,
+ and we're now about 3-4% slower than before starting this
+ morning. But this should be the last of the changes that adds
+ significant extra time use?
+
+ * src/vicinity.(h|cpp):
+ support code for the protocones modification
+
+2007-02-18 [pm] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/defines.h:
+ changed default EPSILON values to reflect what will be needed
+ with the new approach.
+
+ * src/vicinity.cpp:
+ carried out the calculation of cocircular_range inside the
+ append_to_vicinity member function; the extra
+ calculations/storage etc lead to a 2-3% slow-down for the
+ standard fastjet (354 particle) test event with R=1.
+
+ * src/momentum.h:
+ added a small 2-vector class, needed as a shorthand in
+ vicinity.cpp, plus various small utility routines.
+
+ * src/vicinity.h:
+ introduced cocircular_range and cocircular (list) as members of
+ Cvicinity_elm
+
+ * src/momentum.h:
+ introduced phi_in_range, dphi and abs_dphi inline functions.
+
+2007-02-18 [am] Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * src/vicinity.cpp (include):
+ switched to twopi from defines.h instead of the pi2 class member
+
+ * src/siscone_error.(cpp|h): *** ADDED ***
+ this is a simple class for throwing errors.
+
+ * src/protocones.cpp:
+ caused test_cone cocircular to throw errors when it receives
+ more than 32 points
+
+ carried out replacement client -> candidate
+
+ * src/defines.h:
+ introduced definition of twopi, which is used in many place (only
+ some usage instances have been replaced for now).
+
+
+2007-02-16 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/defines.h: consider the limit on cocircularity and
+ collinearity as different ones. This introduces the
+ EPSILON_COCIRCULAR definition.
+
+ * src/protocones.cpp (siscone):
+ 1. the list of cocircular situations already encountered is
+ maintained with a pair of references (the cone contents and
+ its border) instead of its coordinates.
+ 2. we have improved the recomputation of the cone contents by
+ dynamically tracking he particles inside of the cone. This
+ adds a list of included particles in Cvicinity as well as a
+ pointer to elements of that list in vicinity elements.
+
+2007-02-15 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/protocones.cpp: Code has been restructured to clearly
+ separate the cocircular case
+
+ * dealt woth cocircularity and 2\pi periodicity and added
+ an inline fction
+
+2007-02-14 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * src/reference.cpp (siscone): ensures that the reference is not
+ zero
+
+ * src/protocones.cpp (siscone): Fix a bug with the interference
+ between the recomputation of jets and the update of cocircular
+ points
+
+ * src/protocones.cpp (siscone): add tests for recomputation of the
+ cone content for the case of cocircular points
+
+ * src/protocones.cpp (siscone): when testing the threshold for
+ recomputation of te cone content, we add a test putting
+ automatically the cone to 0 when it is empty.
+
+2007-02-13 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * We add a test of cocircularity: when more the p>2 particles are
+ found on the same circle, we branch to a different test of cone
+ stability. This new part of the algorithm tests all possible
+ inclusions/exclusions of the particles along the circle in a
+ 2^p-type algorithm. Note that findling large values of p is
+ highly improbable !
+
+2007-02-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * when traversing the centre list (in stable cones search), we
+ start with the centre which is the most separated from its
+ neighbours. This allows to minimize the possibility that we
+ miscomputed the computation of the initial cone content due to
+ possible rounding errors when two centres are too close.
+
+2007-02-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * in collinear merging, take care of the periodicity in phi
+
+ * put the threshold for collinear merging in defines.h
+ (EPSILON_COLLINEAR)
+
+2007-02-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * undo the previous modification and use another approach to deal
+ with collinear particles: we keep the p_remain list as it was
+ before (see revision 84). Instead, after computing p_remain, we
+ compute p_uncol which is obtained from p_remain by merging
+ collinear particles. In the siscone main loop, we then use
+ p_uncol instead of p_remain for the search for stable
+ cones. Note that with this modification, the 'parent_index'
+ field of Cmomentum is back to its original definition as a
+ 'int'.
+
+2007-02-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * remove initialisation of parent_index in momentum.cpp and
+ vicinity.cpp This is allowed because of the Npass loop in
+ siscone. Indeed, parent_index is only used internally in
+ split_merge and init at the very beginning of the loop by a call
+ to init_pleft
+
+ * replaced "int parent_index" by "vector<int> parent_index" and
+ align the code in split_merge.cpp
+
+ * add a few lines off code in split_merge.cpp to account for
+ collinear particles.
+
+ * Note concerning the previous update: the change has been
+ validated and is no longer considered as temporary
+
+2007-02-12 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * Changed the test for recomputation of cone content in Cstable_cones
+ see defines.h for details
+ (this change may be temporary)
+
+2007-02-10 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * fixed doxygen documentation issues:
+ - undocumented or renamed parameters
+ - include various links into a custom html footer
+
+2007-01-25 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * fixed memory leak for Cvicinity::ve_list
+ in Cvicinity::set_particle_list()
+
+2007-01-23 Gavin SALAM <salam@lpthe.jussieu.fr>
+
+ * added _ptmin argument to Csiscone::recompute_jets(...)
+
+2007-01-22 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * add ptmin threshold on protojets during split-merge
+ * modify example program to allow for the --ptmin option
+
+2007-01-20 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * fix typo mistake in split_merge.cpp
+
+2007-01-18 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * insert a header on top of each source files to give brief information
+ about its content, the SISCone project and copyright
+
+2007-01-03 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * remove the usage of the quadtree in stable cones detection.
+ Usage of the quadtree in vicinity list creation and final stability
+ tests can be switched on buy defining USE_QUADTREE in defines.h.
+ This step was not fully achieved in the last update.
+
+2006-12-28 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * remove the usage of the quadtree in stable cones detection.
+ Usage of the quadtree in vicinity list creation and final stability
+ tests can be switched on by defining USE_QUADTREE in defines.h
+
+2006-12-28 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * commented out various "template std::vector<...>" lines to solve
+ compilation problem on Macs.
+
+ * modified the make depend targets so that they do not include
+ "standard" include files (which differ from one system to
+ another).
+
+ * fixed log(_Np) bug pointed out by Matteo; fixed program name in
+ defines.h
+
+2006-12-28 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * replace variables with name being "underscore" followed by
+ a single letter by longer names since they lead to compilation
+ problems under Mac. In practice, we renamed _N with _Np in hash.cpp/h
+ and _R by _radius in protocones.cpp/h and siscone.cpp/h
+
+2006-12-27 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * arranged for "make dist" to create a file with the same version
+ name in the directory and the tar file; made the tar-file
+ read-only (to avoid involuntarily overwrite); removed svn file
+ from the examples/events subdirectory.
+
+2006-12-26 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * updated the 'dist' target in the Makefile: include mem_check
+ with the correct path and build archive so that it unpacks into
+ a siscone-1.0-beta directory
+
+ * fix typos in INSTALL
+
+2006-12-26 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * Changed banner so that first char is # (to allow the rest of the
+ line to be considered a comment by things like gnuplot).
+
+ * moved scones -> siscone (and sorted out various "ignores")
+
+ * Reordered changelog so that later stuff appears first (I think
+ this is standard? Makes it easier to see what's been happening
+ recently...)
+
+ * Tidying up: moved jets.gri and mem_check into the examples
+ directory; added -f to "rm" command in make clean to avoid
+ errors; modified siscones->siscone in a couple of places in
+ doc.
+
+ * Brought the README and INSTALL files up to date
+
+ * set some svn:ignore property so as to ignore .dat files (to
+ reduce "noise" with svn status).
+
+ * added #!/bin/bash to head of examples/mem_check
+
+2006-12-22 Gregory Soyez <g.soyez@ulg.ac.be>
+
+ * rename scones namespace into siscone
+
+ * put ranlux stuff into the namespace (we don't want to
+ pollute the gobal namespace
+
+ * add doc/devel as directory for developer's documentation
+ (using Doxygen)
+
+ * scones.h/cpp is renamed siscone.h/cpp
+
+ * creation of an 'examples' directory for various programs
+ only the library libsiscone.a is left in the src dir
+ Malefiles are modified accordingly
+
+
+2006-12-21 Gavin Salam <salam@lpthe.jussieu.fr>
+
+ * added the MERGE_IDENTICAL_PROTOCONES_DEFAULT_TRUE define to
+ allow one to make MERGE_IDENTICAL_PROTOCONES to be set true by
+ default if need be. (This makes it a bit easier to make a quick
+ modification to run a test).
+
+ * changed some of the related comments
+
+ * replaced occurrences of "extensive" with "multipass"
+
+ * Added the ChangeLog file!
+
+
+2006-12-21 START OF CHANGELOG
+
Index: tags/siscone-3.0.4
===================================================================
--- tags/siscone-3.0.4 (revision 419)
+++ tags/siscone-3.0.4 (revision 420)
Property changes on: tags/siscone-3.0.4
___________________________________________________________________
Added: svn:ignore
## -0,0 +1,19 ##
+*.tar.gz
+
+Makefile.in
+
+config.guess
+config.log
+config.status
+config.sub
+configure
+depcomp
+aclocal.m4
+Makefile
+autom4te.cache
+install-sh
+libtool
+ltmain.sh
+missing
+
+compile

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