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diff --git a/cmake/setup.sh.in b/cmake/setup.sh.in
index f5ef12e..e65ff10 100644
--- a/cmake/setup.sh.in
+++ b/cmake/setup.sh.in
@@ -1,134 +1,146 @@
# Copyright 2016 L. Pickering, P Stowell, R. Terri, C. Wilkinson, C. Wret
################################################################################
# This file is part of NUISANCE.
#
# NUISANCE is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# NUISANCE is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with NUISANCE. If not, see <http://www.gnu.org/licenses/>.
################################################################################
#!/bin/sh
-if ! [[ ":$PATH:" == *":@CMAKE_INSTALL_PREFIX@/bin:"* ]]; then
- export PATH=@CMAKE_INSTALL_PREFIX@/bin:$PATH
-fi
-if ! [[ ":$LD_LIBRARY_PATH:" == *":@CMAKE_INSTALL_PREFIX@/lib:"* ]]; then
- export LD_LIBRARY_PATH=@CMAKE_INSTALL_PREFIX@/lib:$LD_LIBRARY_PATH
-fi
+### Adapted from https://unix.stackexchange.com/questions/4965/keep-duplicates-out-of-path-on-source
+add_to_PATH () {
+ for d; do
+
+ d=$(cd -- "$d" && { pwd -P || pwd; }) 2>/dev/null # canonicalize symbolic links
+ if [ -z "$d" ]; then continue; fi # skip nonexistent directory
+
+ if [ "$d" == "/usr/bin" ] || [ "$d" == "/usr/bin64" ] || [ "$d" == "/usr/local/bin" ] || [ "$d" == "/usr/local/bin64" ]; then
+ case ":$PATH:" in
+ *":$d:"*) :;;
+ *) export PATH=$PATH:$d;;
+ esac
+ else
+ case ":$PATH:" in
+ *":$d:"*) :;;
+ *) export PATH=$d:$PATH;;
+ esac
+ fi
+ done
+}
+
+add_to_LD_LIBRARY_PATH () {
+ for d; do
+
+ d=$(cd -- "$d" && { pwd -P || pwd; }) 2>/dev/null # canonicalize symbolic links
+ if [ -z "$d" ]; then continue; fi # skip nonexistent directory
+
+ if [ "$d" == "/usr/lib" ] || [ "$d" == "/usr/lib64" ] || [ "$d" == "/usr/local/lib" ] || [ "$d" == "/usr/local/lib64" ]; then
+ case ":$LD_LIBRARY_PATH:" in
+ *":$d:"*) :;;
+ *) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$d;;
+ esac
+ else
+ case ":$LD_LIBRARY_PATH:" in
+ *":$d:"*) :;;
+ *) export LD_LIBRARY_PATH=$d:$LD_LIBRARY_PATH;;
+ esac
+ fi
+ done
+}
+
+add_to_PATH "@CMAKE_INSTALL_PREFIX@/bin"
+
+add_to_LD_LIBRARY_PATH "@CMAKE_INSTALL_PREFIX@/lib"
-if [[ ! "${ROOTSYS}" ]]; then
+if [ ! "${ROOTSYS}" ]; then
echo "[INFO]: Sourcing ROOT from: @CMAKE_ROOTSYS@"
source "@CMAKE_ROOTSYS@/bin/thisroot.sh"
fi
-
-if [[ "@USE_NEUT@" != "FALSE" ]]; then
+if [ "@USE_NEUT@" != "FALSE" ]; then
echo "[INFO]: Adding NEUT library paths to the environment."
export NEUT_ROOT=@NEUT_ROOT@
export CERN=@CERN@
export CERN_LEVEL=@CERN_LEVEL@
- if ! [[ ":$LD_LIBRARY_PATH:" == *":${NEUT_ROOT}/lib/Linux_pc:"* ]]; then
- export LD_LIBRARY_PATH=${NEUT_ROOT}/lib/Linux_pc:$LD_LIBRARY_PATH
- fi
- if ! [[ ":$LD_LIBRARY_PATH:" == *":${NEUT_ROOT}/src/reweight:"* ]]; then
- export LD_LIBRARY_PATH=${NEUT_ROOT}/src/reweight:$LD_LIBRARY_PATH
- fi
+ add_to_LD_LIBRARY_PATH "${NEUT_ROOT}/lib/Linux_pc" "${NEUT_ROOT}/src/reweight"
fi
-if [[ "@USE_NuWro@" != "FALSE" ]]; then
- if [[ "@NUWRO_BUILT_FROM_FILE@" == "FALSE" ]]; then
+if [ "@USE_NuWro@" != "FALSE" ]; then
+ if [ "@NUWRO_BUILT_FROM_FILE@" == "FALSE" ]; then
echo "[INFO]: Adding NuWro library paths to the environment."
export NUWRO="@NUWRO@"
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@NUWRO@/build/@CMAKE_SYSTEM_NAME@/lib:"* ]]; then
- export LD_LIBRARY_PATH=@NUWRO@/build/@CMAKE_SYSTEM_NAME@/lib:$LD_LIBRARY_PATH
- fi
- if [[ "@NUWRO_INC@" ]]; then
+ add_to_PATH "@NUWRO@/bin"
+ add_to_LD_LIBRARY_PATH "@NUWRO@/build/@CMAKE_SYSTEM_NAME@/lib"
+
+ if [ "@NUWRO_INC@" ]; then
export NUWRO_INC=@NUWRO_INC@
fi
+
else
echo "[INFO]: NuWro support included from input event file."
fi
fi
-if [[ "@NEED_PYTHIA6@" != "FALSE" ]]; then
+if [ "@NEED_PYTHIA6@" != "FALSE" ]; then
echo "[INFO]: Adding PYTHIA6 library paths to the environment."
export PYTHIA6="@PYTHIA6@"
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@PYTHIA6@:"* ]]; then
- export LD_LIBRARY_PATH=@PYTHIA6@:$LD_LIBRARY_PATH
- fi
+
+ add_to_LD_LIBRARY_PATH "@PYTHIA6@"
fi
-if [[ "@USE_GENIE@" != "FALSE" ]]; then
+if [ "@USE_GENIE@" != "FALSE" ]; then
echo "[INFO]: Adding GENIE paths to the environment."
export GENIE="@GENIE@"
export LHAPDF_LIB="@LHAPDF_LIB@"
export LHAPDF_INC="@LHAPDF_INC@"
export LIBXML2_LIB="@LIBXML2_LIB@"
export LIBXML2_INC="@LIBXML2_INC@"
export LOG4CPP_LIB="@LOG4CPP_LIB@"
export LOG4CPP_INC="@LOG4CPP_INC@"
- if [[ "@LHAPATH@" ]]; then
+ if [ "@LHAPATH@" ]; then
export LHAPATH="@LHAPATH@"
fi
- if ! [[ ":$PATH:" == *":@GENIE@/bin:"* ]]; then
- export PATH=@GENIE@/bin:$PATH
- fi
-
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@GENIE@/lib:"* ]]; then
- export LD_LIBRARY_PATH=@GENIE@/lib:$LD_LIBRARY_PATH
- fi
-
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@LHAPDF_LIB@:"* ]]; then
- export LD_LIBRARY_PATH=@LHAPDF_LIB@:$LD_LIBRARY_PATH
- fi
+ add_to_PATH "@GENIE@/bin"
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@LIBXML2_LIB@:"* ]]; then
- export LD_LIBRARY_PATH=@LIBXML2_LIB@:$LD_LIBRARY_PATH
- fi
+ add_to_LD_LIBRARY_PATH "@GENIE@/lib" "@LHAPDF_LIB@" "@LIBXML2_LIB@" "@LOG4CPP_LIB@"
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@LOG4CPP_LIB@:"* ]]; then
- export LD_LIBRARY_PATH=@LOG4CPP_LIB@:$LD_LIBRARY_PATH
- fi
fi
-if [[ "@USE_NIWG@" != "FALSE" ]]; then
+if [ "@USE_NIWG@" != "FALSE" ]; then
echo "[INFO]: Adding NIWG paths to the environment."
export NIWG=@NIWG_ROOT@
export NIWGREWEIGHT_INPUTS=@NIWG_ROOT@/inputs
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@NIWG_ROOT@:"* ]]; then
- export LD_LIBRARY_PATH=${NIWG}:${LD_LIBRARY_PATH}
- fi
-
+ add_to_LD_LIBRARY_PATH "@NIWG_ROOT@"
fi
-if [[ "@USE_T2K@" != "FALSE" ]]; then
+if [ "@USE_T2K@" != "FALSE" ]; then
echo "[INFO]: Adding T2K paths to the environment."
export T2KREWEIGHT=@T2KREWEIGHT@
- if ! [[ ":$LD_LIBRARY_PATH:" == *":@T2KREWEIGHT@/lib:"* ]]; then
- export LD_LIBRARY_PATH=${T2KREWEIGHT}/lib:${LD_LIBRARY_PATH}
- fi
+ add_to_LD_LIBRARY_PATH "@T2KREWEIGHT@/lib"
fi
-if [[ "@BUILD_GiBUU@" != "FALSE" ]]; then
+if [ "@BUILD_GiBUU@" != "FALSE" ]; then
echo "[INFO]: Sourcing GiBUU tools."
source @CMAKE_BINARY_DIR@/GiBUUTools/src/GiBUUTools-build/Linux/setup.sh
fi
export NUISANCE="@CMAKE_SOURCE_DIR@"

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