diff --git a/Documentation/Tex/MiMeS.pdf b/Documentation/Tex/MiMeS.pdf deleted file mode 100644 index 91c708c..0000000 Binary files a/Documentation/Tex/MiMeS.pdf and /dev/null differ diff --git a/Documentation/Tex/MiMeS.toc b/Documentation/Tex/MiMeS.toc deleted file mode 100644 index 9115dae..0000000 --- a/Documentation/Tex/MiMeS.toc +++ /dev/null @@ -1,79 +0,0 @@ -\contentsline {section}{\numberline {1}Introduction}{2}{section.1}% -\contentsline {section}{\numberline {2}Physics background}{3}{section.2}% -\contentsline {paragraph}{The EOM}{3}{section*.2}% -\contentsline {paragraph}{Initial conditions}{4}{figure.caption.4}% -\contentsline {subsection}{\numberline {2.1}The WKB approximation}{4}{subsection.2.1}% -\contentsline {paragraph}{Axion energy density}{5}{section*.5}% -\contentsline {subsection}{\numberline {2.2}Notation}{5}{subsection.2.2}% -\contentsline {subsection}{\numberline {2.3}Adiabatic invariant and the anharmonic factor}{6}{subsection.2.3}% -\contentsline {paragraph}{Definition of the adiabatic invariant}{6}{section*.6}% -\contentsline {paragraph}{Application to the axion}{6}{section*.7}% -\contentsline {paragraph}{The role of the adiabatic invariant in the axion relic energy density}{7}{section*.9}% -\contentsline {section}{\numberline {3}{\tt MiMeS}\xspace usage}{8}{section.3}% -\contentsline {subsection}{\numberline {3.1}First steps}{8}{subsection.3.1}% -\contentsline {subsubsection}{\numberline {3.1.1}Using {\tt MiMeS}\xspace in {\tt C++}\xspace }{8}{subsubsection.3.1.1}% -\contentsline {paragraph}{Axion mass form data file}{9}{section*.10}% -\contentsline {paragraph}{Axion mass function}{9}{section*.11}% -\contentsline {paragraph}{The EOM solver}{9}{section*.12}% -\contentsline {paragraph}{Changing axion mass definition}{11}{section*.13}% -\contentsline {paragraph}{Changing initial condition}{11}{section*.14}% -\contentsline {subsubsection}{\numberline {3.1.2}Using {\tt MiMeS}\xspace in {\tt python}\xspace }{11}{subsubsection.3.1.2}% -\contentsline {paragraph}{Axion mass definition via a data file}{11}{section*.15}% -\contentsline {paragraph}{Axion mass definition via a function}{12}{section*.16}% -\contentsline {paragraph}{Importand note}{12}{section*.17}% -\contentsline {paragraph}{The EOM solver}{12}{section*.18}% -\contentsline {paragraph}{Changing axion mass definition}{13}{section*.19}% -\contentsline {paragraph}{Changing the initial condition}{13}{section*.20}% -\contentsline {paragraph}{Importand note}{13}{section*.21}% -\contentsline {section}{\numberline {4}Assumptions and user input}{13}{section.4}% -\contentsline {subsection}{\numberline {4.1}Options at Compile-time}{13}{subsection.4.1}% -\contentsline {subsection}{\numberline {4.2}User input}{15}{subsection.4.2}% -\contentsline {subsubsection}{\numberline {4.2.1}Compile-time input}{15}{subsubsection.4.2.1}% -\contentsline {paragraph}{Files}{15}{section*.22}% -\contentsline {subsubsection}{\numberline {4.2.2}Run-time input}{15}{subsubsection.4.2.2}% -\contentsline {subsection}{\numberline {4.3}Complete Examples}{16}{subsection.4.3}% -\contentsline {subsubsection}{\numberline {4.3.1}complete example in {\tt C++}\xspace }{17}{subsubsection.4.3.1}% -\contentsline {paragraph}{Parameter choice}{18}{section*.24}% -\contentsline {paragraph}{Template arguments}{18}{section*.25}% -\contentsline {paragraph}{Compilation}{18}{section*.26}% -\contentsline {paragraph}{The entire code}{18}{section*.27}% -\contentsline {paragraph}{Alternative axion mass definition}{19}{section*.28}% -\contentsline {subsubsection}{\numberline {4.3.2}complete example in {\tt python}\xspace }{19}{subsubsection.4.3.2}% -\contentsline {paragraph}{Compilation of the shared library}{21}{section*.29}% -\contentsline {paragraph}{The entire code}{21}{section*.30}% -\contentsline {paragraph}{Alternative axion mass definition}{22}{section*.31}% -\contentsline {subsubsection}{\numberline {4.3.3}Results}{22}{subsubsection.4.3.3}% -\contentsline {section}{\numberline {5}Acknowledgements}{23}{section.5}% -\contentsline {section}{\numberline {6}Summary}{23}{section.6}% -\contentsline {section}{\numberline {A}Basics of embedded Runge-Kutta Mehtods}{23}{appendix.A}% -\contentsline {subsection}{\numberline {A.1}Embedded RK methods}{24}{subsection.A.1}% -\contentsline {paragraph}{Step-control}{24}{section*.35}% -\contentsline {paragraph}{Correspondence between {\tt MiMeS}\xspace parameters and RK ones}{25}{section*.36}% -\contentsline {subsection}{\numberline {A.2}Explicit embedded RK methods}{25}{subsection.A.2}% -\contentsline {subsection}{\numberline {A.3}Rosenbrock methods}{25}{subsection.A.3}% -\contentsline {paragraph}{Implementing a new Butcher tableau in {\tt NaBBODES}}{26}{section*.38}% -\contentsline {paragraph}{How to compile {\tt MiMeS}\xspace in order to use the newly implemented method}{27}{section*.39}% -\contentsline {section}{\numberline {B}{\tt C++}\xspace classes}{27}{appendix.B}% -\contentsline {subsection}{\numberline {B.1}{\tt Cosmo} class}{27}{subsection.B.1}% -\contentsline {subsection}{\numberline {B.2}{\tt AnharmonicFactor} class}{28}{subsection.B.2}% -\contentsline {subsection}{\numberline {B.3}{\tt AxionMass} class}{28}{subsection.B.3}% -\contentsline {subsection}{\numberline {B.4}{\tt AxionEOM} class}{29}{subsection.B.4}% -\contentsline {subsection}{\numberline {B.5}{\tt Axion} class}{30}{subsection.B.5}% -\contentsline {section}{\numberline {C}{\tt python}\xspace interface}{31}{appendix.C}% -\contentsline {subsection}{\numberline {C.1}{\tt Cosmo} class}{31}{subsection.C.1}% -\contentsline {subsection}{\numberline {C.2}{\tt AxionMass} class}{32}{subsection.C.2}% -\contentsline {subsection}{\numberline {C.3}{\tt Axion} class}{33}{subsection.C.3}% -\contentsline {paragraph}{Important difference between the {\tt C++}\xspace version}{35}{section*.40}% -\contentsline {section}{\numberline {D}{\tt WKB} module}{35}{appendix.D}% -\contentsline {section}{\numberline {E}The {\tt ScanScript} module}{35}{appendix.E}% -\contentsline {subsection}{\numberline {E.1}The {\tt Scan} class}{35}{subsection.E.1}% -\contentsline {subsection}{\numberline {E.2}The {\tt ScanObs} class}{36}{subsection.E.2}% -\contentsline {subsection}{\numberline {E.3}\tt FT class}{37}{subsection.E.3}% -\contentsline {section}{\numberline {F}Utilities}{38}{appendix.F}% -\contentsline {subsection}{\numberline {F.1}\tt FormatFile.sh}{38}{subsection.F.1}% -\contentsline {subsection}{\numberline {F.2}\tt timeit.sh}{39}{subsection.F.2}% -\contentsline {subsection}{\numberline {F.3}{\tt Timer} {\tt C++}\xspace class}{39}{subsection.F.3}% -\contentsline {subsection}{\numberline {F.4}{\tt linspace} function}{39}{subsection.F.4}% -\contentsline {subsection}{\numberline {F.5}{\tt logspace} function}{40}{subsection.F.5}% -\contentsline {subsection}{\numberline {F.6}{\tt map} function}{40}{subsection.F.6}% -\contentsline {section}{\numberline {G}Quick guide to the user input}{40}{appendix.G}%